data_4F9W # _model_server_result.job_id Rw0RyotVJdldMIBZjJk_CA _model_server_result.datetime_utc '2024-11-22 19:42:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4F9W # _exptl.entry_id 4F9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F9W _cell.length_a 65.671 _cell.length_b 74.311 _cell.length_c 77.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 64 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 A OD2 ASP 184 A ASP 161 1_555 E ZN ZN . A ZN 404 3_545 ? A ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 E ZN ZN . A ZN 404 1_555 F O ACT . A ACT 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 E ZN ZN . A ZN 404 1_555 I O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 4F9W _atom_sites.fract_transf_matrix[1][1] 0.015227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GG5 A 1 401 1 GG5 GG5 . C 2 GG5 A 1 402 2 GG5 GG5 . D 3 LM4 A 1 403 3 LM4 LM4 . E 4 ZN A 1 404 4 ZN ZN . F 5 ACT A 1 405 5 ACT ACT . G 6 BME A 1 406 6 BME BME . H 7 GOL A 1 407 7 GOL GOL . I 8 HOH A 1 501 8 HOH HOH . I 8 HOH A 2 502 9 HOH HOH . I 8 HOH A 3 503 10 HOH HOH . I 8 HOH A 4 504 11 HOH HOH . I 8 HOH A 5 505 12 HOH HOH . I 8 HOH A 6 506 13 HOH HOH . I 8 HOH A 7 507 14 HOH HOH . I 8 HOH A 8 508 15 HOH HOH . I 8 HOH A 9 509 16 HOH HOH . I 8 HOH A 10 510 17 HOH HOH . I 8 HOH A 11 511 18 HOH HOH . I 8 HOH A 12 512 19 HOH HOH . I 8 HOH A 13 513 20 HOH HOH . I 8 HOH A 14 514 21 HOH HOH . I 8 HOH A 15 515 22 HOH HOH . I 8 HOH A 16 516 23 HOH HOH . I 8 HOH A 17 517 24 HOH HOH . I 8 HOH A 18 518 25 HOH HOH . I 8 HOH A 19 519 26 HOH HOH . I 8 HOH A 20 520 27 HOH HOH . I 8 HOH A 21 521 28 HOH HOH . I 8 HOH A 22 522 29 HOH HOH . I 8 HOH A 23 523 30 HOH HOH . I 8 HOH A 24 524 31 HOH HOH . I 8 HOH A 25 525 32 HOH HOH . I 8 HOH A 26 526 33 HOH HOH . I 8 HOH A 27 527 34 HOH HOH . I 8 HOH A 28 528 35 HOH HOH . I 8 HOH A 29 529 36 HOH HOH . I 8 HOH A 30 530 37 HOH HOH . I 8 HOH A 31 531 38 HOH HOH . I 8 HOH A 32 532 39 HOH HOH . I 8 HOH A 33 533 40 HOH HOH . I 8 HOH A 34 534 41 HOH HOH . I 8 HOH A 35 535 42 HOH HOH . I 8 HOH A 36 536 43 HOH HOH . I 8 HOH A 37 537 44 HOH HOH . I 8 HOH A 38 538 45 HOH HOH . I 8 HOH A 39 539 46 HOH HOH . I 8 HOH A 40 540 47 HOH HOH . I 8 HOH A 41 541 48 HOH HOH . I 8 HOH A 42 542 49 HOH HOH . I 8 HOH A 43 543 50 HOH HOH . I 8 HOH A 44 544 51 HOH HOH . I 8 HOH A 45 545 52 HOH HOH . I 8 HOH A 46 546 53 HOH HOH . I 8 HOH A 47 547 54 HOH HOH . I 8 HOH A 48 548 55 HOH HOH . I 8 HOH A 49 549 56 HOH HOH . I 8 HOH A 50 550 57 HOH HOH . I 8 HOH A 51 551 58 HOH HOH . I 8 HOH A 52 552 59 HOH HOH . I 8 HOH A 53 553 60 HOH HOH . I 8 HOH A 54 554 61 HOH HOH . I 8 HOH A 55 555 62 HOH HOH . I 8 HOH A 56 556 63 HOH HOH . I 8 HOH A 57 557 64 HOH HOH . I 8 HOH A 58 558 65 HOH HOH . I 8 HOH A 59 559 66 HOH HOH . I 8 HOH A 60 560 67 HOH HOH . I 8 HOH A 61 561 68 HOH HOH . I 8 HOH A 62 562 69 HOH HOH . I 8 HOH A 63 563 70 HOH HOH . I 8 HOH A 64 564 71 HOH HOH . I 8 HOH A 65 565 72 HOH HOH . I 8 HOH A 66 566 73 HOH HOH . I 8 HOH A 67 567 74 HOH HOH . I 8 HOH A 68 568 75 HOH HOH . I 8 HOH A 69 569 76 HOH HOH . I 8 HOH A 70 570 77 HOH HOH . I 8 HOH A 71 571 78 HOH HOH . I 8 HOH A 72 572 79 HOH HOH . I 8 HOH A 73 573 80 HOH HOH . I 8 HOH A 74 574 81 HOH HOH . I 8 HOH A 75 575 82 HOH HOH . I 8 HOH A 76 576 83 HOH HOH . I 8 HOH A 77 577 84 HOH HOH . I 8 HOH A 78 578 85 HOH HOH . I 8 HOH A 79 579 86 HOH HOH . I 8 HOH A 80 580 87 HOH HOH . I 8 HOH A 81 581 88 HOH HOH . I 8 HOH A 82 582 89 HOH HOH . I 8 HOH A 83 583 90 HOH HOH . I 8 HOH A 84 584 91 HOH HOH . I 8 HOH A 85 585 92 HOH HOH . I 8 HOH A 86 586 93 HOH HOH . I 8 HOH A 87 587 94 HOH HOH . I 8 HOH A 88 588 95 HOH HOH . I 8 HOH A 89 589 96 HOH HOH . I 8 HOH A 90 590 97 HOH HOH . I 8 HOH A 91 591 98 HOH HOH . I 8 HOH A 92 592 99 HOH HOH . I 8 HOH A 93 593 100 HOH HOH . I 8 HOH A 94 594 101 HOH HOH . I 8 HOH A 95 595 102 HOH HOH . I 8 HOH A 96 596 103 HOH HOH . I 8 HOH A 97 597 104 HOH HOH . I 8 HOH A 98 598 105 HOH HOH . I 8 HOH A 99 599 106 HOH HOH . I 8 HOH A 100 600 107 HOH HOH . I 8 HOH A 101 601 108 HOH HOH . I 8 HOH A 102 602 109 HOH HOH . I 8 HOH A 103 603 110 HOH HOH . I 8 HOH A 104 604 111 HOH HOH . I 8 HOH A 105 605 112 HOH HOH . I 8 HOH A 106 606 113 HOH HOH . I 8 HOH A 107 607 114 HOH HOH . I 8 HOH A 108 608 115 HOH HOH . I 8 HOH A 109 609 116 HOH HOH . I 8 HOH A 110 610 117 HOH HOH . I 8 HOH A 111 611 118 HOH HOH . I 8 HOH A 112 612 119 HOH HOH . I 8 HOH A 113 613 120 HOH HOH . I 8 HOH A 114 614 121 HOH HOH . I 8 HOH A 115 615 122 HOH HOH . I 8 HOH A 116 616 123 HOH HOH . I 8 HOH A 117 617 124 HOH HOH . I 8 HOH A 118 618 125 HOH HOH . I 8 HOH A 119 619 126 HOH HOH . I 8 HOH A 120 620 127 HOH HOH . I 8 HOH A 121 621 128 HOH HOH . I 8 HOH A 122 622 129 HOH HOH . I 8 HOH A 123 623 130 HOH HOH . I 8 HOH A 124 624 131 HOH HOH . I 8 HOH A 125 625 132 HOH HOH . I 8 HOH A 126 626 133 HOH HOH . I 8 HOH A 127 627 134 HOH HOH . I 8 HOH A 128 628 135 HOH HOH . I 8 HOH A 129 629 136 HOH HOH . I 8 HOH A 130 630 137 HOH HOH . I 8 HOH A 131 631 138 HOH HOH . I 8 HOH A 132 632 139 HOH HOH . I 8 HOH A 133 633 140 HOH HOH . I 8 HOH A 134 634 141 HOH HOH . I 8 HOH A 135 635 142 HOH HOH . I 8 HOH A 136 636 143 HOH HOH . I 8 HOH A 137 637 144 HOH HOH . I 8 HOH A 138 638 145 HOH HOH . I 8 HOH A 139 639 146 HOH HOH . I 8 HOH A 140 640 147 HOH HOH . I 8 HOH A 141 641 148 HOH HOH . I 8 HOH A 142 642 149 HOH HOH . I 8 HOH A 143 643 150 HOH HOH . I 8 HOH A 144 644 151 HOH HOH . I 8 HOH A 145 645 152 HOH HOH . I 8 HOH A 146 646 153 HOH HOH . I 8 HOH A 147 647 154 HOH HOH . I 8 HOH A 148 648 155 HOH HOH . I 8 HOH A 149 649 156 HOH HOH . I 8 HOH A 150 650 157 HOH HOH . I 8 HOH A 151 651 158 HOH HOH . I 8 HOH A 152 652 159 HOH HOH . I 8 HOH A 153 653 160 HOH HOH . I 8 HOH A 154 654 161 HOH HOH . I 8 HOH A 155 655 162 HOH HOH . I 8 HOH A 156 656 163 HOH HOH . I 8 HOH A 157 657 164 HOH HOH . I 8 HOH A 158 658 165 HOH HOH . I 8 HOH A 159 659 166 HOH HOH . I 8 HOH A 160 660 167 HOH HOH . I 8 HOH A 161 661 168 HOH HOH . I 8 HOH A 162 662 169 HOH HOH . I 8 HOH A 163 663 170 HOH HOH . I 8 HOH A 164 664 171 HOH HOH . I 8 HOH A 165 665 172 HOH HOH . I 8 HOH A 166 666 173 HOH HOH . I 8 HOH A 167 667 174 HOH HOH . I 8 HOH A 168 668 175 HOH HOH . I 8 HOH A 169 669 176 HOH HOH . I 8 HOH A 170 670 177 HOH HOH . I 8 HOH A 171 671 178 HOH HOH . I 8 HOH A 172 672 179 HOH HOH . I 8 HOH A 173 673 180 HOH HOH . I 8 HOH A 174 674 181 HOH HOH . I 8 HOH A 175 675 182 HOH HOH . I 8 HOH A 176 676 183 HOH HOH . I 8 HOH A 177 677 184 HOH HOH . I 8 HOH A 178 678 185 HOH HOH . I 8 HOH A 179 679 186 HOH HOH . I 8 HOH A 180 680 187 HOH HOH . I 8 HOH A 181 681 188 HOH HOH . I 8 HOH A 182 682 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 -25.917 -5.138 24.598 1 76.77 ? C1 GOL 407 A 1 HETATM 2 O O1 GOL . . . H 7 -24.86 -5.494 23.696 1 57.08 ? O1 GOL 407 A 1 HETATM 3 C C2 GOL . . . H 7 -26.34 -3.686 24.363 1 78.58 ? C2 GOL 407 A 1 HETATM 4 O O2 GOL . . . H 7 -27.13 -3.584 23.167 1 69.39 ? O2 GOL 407 A 1 HETATM 5 C C3 GOL . . . H 7 -27.151 -3.17 25.55 1 79.15 ? C3 GOL 407 A 1 HETATM 6 O O3 GOL . . . H 7 -26.34 -2.308 26.35 1 79.8 ? O3 GOL 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #