data_4FA3 # _model_server_result.job_id PJ7bYR96EP2NGcdwJ0Bb_g _model_server_result.datetime_utc '2024-11-06 07:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fa3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FA3 # _exptl.entry_id 4FA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FA3 _cell.length_a 57.127 _cell.length_b 63.469 _cell.length_c 96.445 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 293 n n PA O2A NAP sing 294 n n PA O5B NAP sing 295 n n PA O3 NAP sing 296 n n O2A HOA2 NAP sing 297 n n O5B C5B NAP sing 298 n n C5B C4B NAP sing 299 n n C5B H51A NAP sing 300 n n C5B H52A NAP sing 301 n n C4B O4B NAP sing 302 n n C4B C3B NAP sing 303 n n C4B H4B NAP sing 304 n n O4B C1B NAP sing 305 n n C3B O3B NAP sing 306 n n C3B C2B NAP sing 307 n n C3B H3B NAP sing 308 n n O3B HO3A NAP sing 309 n n C2B O2B NAP sing 310 n n C2B C1B NAP sing 311 n n C2B H2B NAP sing 312 n n O2B P2B NAP sing 313 n n C1B N9A NAP sing 314 n n C1B H1B NAP sing 315 n n N9A C8A NAP sing 316 n y N9A C4A NAP sing 317 n y C8A N7A NAP doub 318 n y C8A H8A NAP sing 319 n n N7A C5A NAP sing 320 n y C5A C6A NAP sing 321 n y C5A C4A NAP doub 322 n y C6A N6A NAP sing 323 n n C6A N1A NAP doub 324 n y N6A H61A NAP sing 325 n n N6A H62A NAP sing 326 n n N1A C2A NAP sing 327 n y C2A N3A NAP doub 328 n y C2A H2A NAP sing 329 n n N3A C4A NAP sing 330 n y O3 PN NAP sing 331 n n PN O1N NAP doub 332 n n PN O2N NAP sing 333 n n PN O5D NAP sing 334 n n O5D C5D NAP sing 335 n n C5D C4D NAP sing 336 n n C5D H51N NAP sing 337 n n C5D H52N NAP sing 338 n n C4D O4D NAP sing 339 n n C4D C3D NAP sing 340 n n C4D H4D NAP sing 341 n n O4D C1D NAP sing 342 n n C3D O3D NAP sing 343 n n C3D C2D NAP sing 344 n n C3D H3D NAP sing 345 n n O3D HO3N NAP sing 346 n n C2D O2D NAP sing 347 n n C2D C1D NAP sing 348 n n C2D H2D NAP sing 349 n n O2D HO2N NAP sing 350 n n C1D N1N NAP sing 351 n n C1D H1D NAP sing 352 n n N1N C2N NAP sing 353 n y N1N C6N NAP doub 354 n y C2N C3N NAP doub 355 n y C2N H2N NAP sing 356 n n C3N C7N NAP sing 357 n n C3N C4N NAP sing 358 n y C7N O7N NAP doub 359 n n C7N N7N NAP sing 360 n n N7N H71N NAP sing 361 n n N7N H72N NAP sing 362 n n C4N C5N NAP doub 363 n y C4N H4N NAP sing 364 n n C5N C6N NAP sing 365 n y C5N H5N NAP sing 366 n n C6N H6N NAP sing 367 n n P2B O1X NAP doub 368 n n P2B O2X NAP sing 369 n n P2B O3X NAP sing 370 n n O2X HOP2 NAP sing 371 n n O3X HOP3 NAP sing 372 n n # _atom_sites.entry_id 4FA3 _atom_sites.fract_transf_matrix[1][1] 0.017505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 700 NAP NAP . C 3 0SL A 1 402 1 0SL DRG . D 4 EDO A 1 403 1 EDO EDO . E 5 ACT A 1 404 1 ACT ACT . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 8 HOH HOH . F 6 HOH A 9 509 9 HOH HOH . F 6 HOH A 10 510 11 HOH HOH . F 6 HOH A 11 511 12 HOH HOH . F 6 HOH A 12 512 13 HOH HOH . F 6 HOH A 13 513 14 HOH HOH . F 6 HOH A 14 514 15 HOH HOH . F 6 HOH A 15 515 16 HOH HOH . F 6 HOH A 16 516 17 HOH HOH . F 6 HOH A 17 517 18 HOH HOH . F 6 HOH A 18 518 19 HOH HOH . F 6 HOH A 19 519 20 HOH HOH . F 6 HOH A 20 520 21 HOH HOH . F 6 HOH A 21 521 22 HOH HOH . F 6 HOH A 22 522 23 HOH HOH . F 6 HOH A 23 523 24 HOH HOH . F 6 HOH A 24 524 25 HOH HOH . F 6 HOH A 25 525 26 HOH HOH . F 6 HOH A 26 526 27 HOH HOH . F 6 HOH A 27 527 28 HOH HOH . F 6 HOH A 28 528 29 HOH HOH . F 6 HOH A 29 529 30 HOH HOH . F 6 HOH A 30 530 31 HOH HOH . F 6 HOH A 31 531 32 HOH HOH . F 6 HOH A 32 532 33 HOH HOH . F 6 HOH A 33 533 34 HOH HOH . F 6 HOH A 34 534 35 HOH HOH . F 6 HOH A 35 535 36 HOH HOH . F 6 HOH A 36 536 37 HOH HOH . F 6 HOH A 37 537 38 HOH HOH . F 6 HOH A 38 538 39 HOH HOH . F 6 HOH A 39 539 41 HOH HOH . F 6 HOH A 40 540 42 HOH HOH . F 6 HOH A 41 541 43 HOH HOH . F 6 HOH A 42 542 44 HOH HOH . F 6 HOH A 43 543 45 HOH HOH . F 6 HOH A 44 544 46 HOH HOH . F 6 HOH A 45 545 47 HOH HOH . F 6 HOH A 46 546 48 HOH HOH . F 6 HOH A 47 547 49 HOH HOH . F 6 HOH A 48 548 50 HOH HOH . F 6 HOH A 49 549 51 HOH HOH . F 6 HOH A 50 550 55 HOH HOH . F 6 HOH A 51 551 56 HOH HOH . F 6 HOH A 52 552 57 HOH HOH . F 6 HOH A 53 553 58 HOH HOH . F 6 HOH A 54 554 60 HOH HOH . F 6 HOH A 55 555 61 HOH HOH . F 6 HOH A 56 556 62 HOH HOH . F 6 HOH A 57 557 63 HOH HOH . F 6 HOH A 58 558 64 HOH HOH . F 6 HOH A 59 559 65 HOH HOH . F 6 HOH A 60 560 67 HOH HOH . F 6 HOH A 61 561 68 HOH HOH . F 6 HOH A 62 562 69 HOH HOH . F 6 HOH A 63 563 70 HOH HOH . F 6 HOH A 64 564 72 HOH HOH . F 6 HOH A 65 565 73 HOH HOH . F 6 HOH A 66 566 74 HOH HOH . F 6 HOH A 67 567 75 HOH HOH . F 6 HOH A 68 568 76 HOH HOH . F 6 HOH A 69 569 77 HOH HOH . F 6 HOH A 70 570 78 HOH HOH . F 6 HOH A 71 571 79 HOH HOH . F 6 HOH A 72 572 80 HOH HOH . F 6 HOH A 73 573 81 HOH HOH . F 6 HOH A 74 574 82 HOH HOH . F 6 HOH A 75 575 83 HOH HOH . F 6 HOH A 76 576 84 HOH HOH . F 6 HOH A 77 577 85 HOH HOH . F 6 HOH A 78 578 86 HOH HOH . F 6 HOH A 79 579 87 HOH HOH . F 6 HOH A 80 580 88 HOH HOH . F 6 HOH A 81 581 89 HOH HOH . F 6 HOH A 82 582 90 HOH HOH . F 6 HOH A 83 583 91 HOH HOH . F 6 HOH A 84 584 92 HOH HOH . F 6 HOH A 85 585 93 HOH HOH . F 6 HOH A 86 586 94 HOH HOH . F 6 HOH A 87 587 95 HOH HOH . F 6 HOH A 88 588 96 HOH HOH . F 6 HOH A 89 589 97 HOH HOH . F 6 HOH A 90 590 98 HOH HOH . F 6 HOH A 91 591 99 HOH HOH . F 6 HOH A 92 592 100 HOH HOH . F 6 HOH A 93 593 101 HOH HOH . F 6 HOH A 94 594 102 HOH HOH . F 6 HOH A 95 595 103 HOH HOH . F 6 HOH A 96 596 104 HOH HOH . F 6 HOH A 97 597 105 HOH HOH . F 6 HOH A 98 598 106 HOH HOH . F 6 HOH A 99 599 107 HOH HOH . F 6 HOH A 100 600 108 HOH HOH . F 6 HOH A 101 601 109 HOH HOH . F 6 HOH A 102 602 110 HOH HOH . F 6 HOH A 103 603 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 1.119 3.242 2.816 1 24.12 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 2.566 3.05 2.894 1 20.89 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 0.552 4.563 2.555 1 20.88 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 0.573 2.287 1.638 1 23.69 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 -0.753 2.53 1.157 1 23.69 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 -1.251 1.372 0.225 1 21.74 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 -0.378 1.573 -0.949 1 21.36 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 -0.885 0.005 0.774 1 21.76 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 -2.058 -0.68 1.377 1 19.02 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 -0.37 -0.775 -0.449 1 23.28 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 -1.357 -1.747 -0.932 1 25.48 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 -0.266 0.277 -1.557 1 23.13 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 1.01 0.277 -2.252 1 26.12 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 2.258 0.081 -1.824 1 25.23 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 3.087 0.19 -2.896 1 27.71 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 2.361 0.453 -3.973 1 25.28 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 2.675 0.641 -5.344 1 26.2 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 3.935 0.535 -5.848 1 21.12 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 1.638 1.018 -6.203 1 24.13 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 0.218 1.216 -5.762 1 26.86 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 -0.046 0.736 -4.377 1 24.03 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 1.027 0.471 -3.543 1 25.36 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 0.399 2.429 4.002 1 21.14 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 0.403 2.702 5.605 1 22.59 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 0.098 1.386 6.274 1 21.78 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 -0.57 3.759 5.906 1 23.42 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 1.864 3.288 5.956 1 22.46 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 3.015 2.42 5.962 1 23.85 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 3.391 1.868 7.405 1 24.29 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 3.511 2.986 8.216 1 24.47 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 2.374 1.091 8.159 1 21.08 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 2.269 -0.201 7.606 1 24.32 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 3.055 1.118 9.56 1 24.93 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 4.307 0.384 9.629 1 21.92 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 3.401 2.589 9.605 1 26.1 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 2.342 3.458 10.17 1 26.41 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 2.553 4.05 11.442 1 23.34 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 1.563 4.848 12.015 1 23.18 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 1.778 5.515 13.403 1 21.46 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 0.831 5.872 14.101 1 18.35 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 3.046 5.719 13.755 1 21.87 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 0.387 5.076 11.301 1 24.01 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 0.196 4.533 10.016 1 24.74 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 1.145 3.704 9.441 1 26.08 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 -0.857 -3.244 -1.37 1 24.15 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 -0.485 -3.938 -0.051 1 24.47 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 -1.928 -3.957 -2.255 1 27.33 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 0.341 -3.169 -2.414 1 20.77 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #