data_4FA7 # _model_server_result.job_id 38WWv04_isdYRZQFjWQBTw _model_server_result.datetime_utc '2024-12-08 23:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":101}' # _entry.id 4FA7 # _exptl.entry_id 4FA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.92 _cell.angle_gamma 90 _cell.entry_id 4FA7 _cell.length_a 143.55 _cell.length_b 98.21 _cell.length_c 94.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A ND1 HIS 239 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 A NE2 HIS 288 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A NE2 HIS 289 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc5 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 D CU CU . A CU 601 1_555 G O2 PEO . A PEO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 F FE HAS . A HAS 603 1_555 G O1 PEO . A PEO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc9 B ND1 HIS 114 B HIS 114 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc11 B SG CYS 149 B CYS 149 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc12 B O GLN 151 B GLN 151 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc14 B SG CYS 153 B CYS 153 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc15 B ND1 HIS 157 B HIS 157 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc16 B SD MET 160 B MET 160 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 456 n n C10 C9 OLC doub 457 n n C10 C11 OLC sing 458 n n C9 C8 OLC sing 459 n n C17 C16 OLC sing 460 z n C11 C12 OLC sing 461 n n C8 C7 OLC sing 462 n n C24 C22 OLC sing 463 n n C24 O25 OLC sing 464 n n C16 C15 OLC sing 465 n n C12 C13 OLC sing 466 n n C7 C6 OLC sing 467 n n C15 C14 OLC sing 468 n n C13 C14 OLC sing 469 n n C6 C5 OLC sing 470 n n C5 C4 OLC sing 471 n n C4 C3 OLC sing 472 n n C3 C2 OLC sing 473 n n C2 C1 OLC sing 474 n n C21 C22 OLC sing 475 n n C21 O20 OLC sing 476 n n C1 O19 OLC doub 477 n n C1 O20 OLC sing 478 n n C22 O23 OLC sing 479 n n C18 H18 OLC sing 480 n n C18 H18A OLC sing 481 n n C18 H18B OLC sing 482 n n C10 H10 OLC sing 483 n n C9 H9 OLC sing 484 n n C17 H17 OLC sing 485 n n C17 H17A OLC sing 486 n n C11 H11 OLC sing 487 n n C11 H11A OLC sing 488 n n C8 H8 OLC sing 489 n n C8 H8A OLC sing 490 n n C24 H24 OLC sing 491 n n C24 H24A OLC sing 492 n n C16 H16 OLC sing 493 n n C16 H16A OLC sing 494 n n C12 H12 OLC sing 495 n n C12 H12A OLC sing 496 n n C7 H7 OLC sing 497 n n C7 H7A OLC sing 498 n n C15 H15 OLC sing 499 n n C15 H15A OLC sing 500 n n C13 H13 OLC sing 501 n n C13 H13A OLC sing 502 n n C6 H6 OLC sing 503 n n C6 H6A OLC sing 504 n n C14 H14 OLC sing 505 n n C14 H14A OLC sing 506 n n C5 H5 OLC sing 507 n n C5 H5A OLC sing 508 n n C4 H4 OLC sing 509 n n C4 H4A OLC sing 510 n n C3 H3 OLC sing 511 n n C3 H3A OLC sing 512 n n C2 H2 OLC sing 513 n n C2 H2A OLC sing 514 n n C21 H21 OLC sing 515 n n C21 H21A OLC sing 516 n n C22 H22 OLC sing 517 n n O25 HO25 OLC sing 518 n n O23 HO23 OLC sing 519 n n # _atom_sites.entry_id 4FA7 _atom_sites.fract_transf_matrix[1][1] 0.006966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 804 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PEO A 1 604 803 PEO PEO . H 8 OLC A 1 605 1 OLC OLC . I 8 OLC A 1 606 3 OLC OLC . J 8 OLC A 1 607 4 OLC OLC . K 8 OLC A 1 608 8 OLC OLC . L 8 OLC A 1 609 9 OLC OLC . M 8 OLC A 1 610 10 OLC OLC . N 8 OLC A 1 611 11 OLC OLC . O 8 OLC A 1 612 12 OLC OLC . P 8 OLC A 1 613 13 OLC OLC . Q 8 OLC A 1 614 14 OLC OLC . R 8 OLC A 1 615 15 OLC OLC . S 8 OLC A 1 616 16 OLC OLC . T 9 CUA B 1 201 802 CUA CUA . U 8 OLC B 1 202 5 OLC OLC . V 8 OLC B 1 203 6 OLC OLC . W 8 OLC B 1 204 7 OLC OLC . X 8 OLC C 1 101 2 OLC OLC . Y 10 HOH A 1 701 1 HOH HOH . Y 10 HOH A 2 702 2 HOH HOH . Y 10 HOH A 3 703 5 HOH HOH . Y 10 HOH A 4 704 6 HOH HOH . Y 10 HOH A 5 705 8 HOH HOH . Y 10 HOH A 6 706 10 HOH HOH . Y 10 HOH A 7 707 11 HOH HOH . Y 10 HOH A 8 708 12 HOH HOH . Y 10 HOH A 9 709 13 HOH HOH . Y 10 HOH A 10 710 17 HOH HOH . Y 10 HOH A 11 711 20 HOH HOH . Y 10 HOH A 12 712 21 HOH HOH . Y 10 HOH A 13 713 23 HOH HOH . Y 10 HOH A 14 714 24 HOH HOH . Y 10 HOH A 15 715 25 HOH HOH . Y 10 HOH A 16 716 28 HOH HOH . Y 10 HOH A 17 717 29 HOH HOH . Y 10 HOH A 18 718 30 HOH HOH . Y 10 HOH A 19 719 31 HOH HOH . Y 10 HOH A 20 720 32 HOH HOH . Y 10 HOH A 21 721 33 HOH HOH . Y 10 HOH A 22 722 34 HOH HOH . Y 10 HOH A 23 723 35 HOH HOH . Y 10 HOH A 24 724 36 HOH HOH . Y 10 HOH A 25 725 37 HOH HOH . Y 10 HOH A 26 726 39 HOH HOH . Y 10 HOH A 27 727 40 HOH HOH . Y 10 HOH A 28 728 41 HOH HOH . Y 10 HOH A 29 729 43 HOH HOH . Y 10 HOH A 30 730 44 HOH HOH . Y 10 HOH A 31 731 45 HOH HOH . Y 10 HOH A 32 732 46 HOH HOH . Y 10 HOH A 33 733 48 HOH HOH . Y 10 HOH A 34 734 49 HOH HOH . Y 10 HOH A 35 735 50 HOH HOH . Y 10 HOH A 36 736 51 HOH HOH . Y 10 HOH A 37 737 52 HOH HOH . Y 10 HOH A 38 738 53 HOH HOH . Y 10 HOH A 39 739 57 HOH HOH . Y 10 HOH A 40 740 58 HOH HOH . Y 10 HOH A 41 741 59 HOH HOH . Y 10 HOH A 42 742 60 HOH HOH . Y 10 HOH A 43 743 61 HOH HOH . Y 10 HOH A 44 744 62 HOH HOH . Y 10 HOH A 45 745 63 HOH HOH . Y 10 HOH A 46 746 64 HOH HOH . Y 10 HOH A 47 747 65 HOH HOH . Y 10 HOH A 48 748 69 HOH HOH . Y 10 HOH A 49 749 70 HOH HOH . Y 10 HOH A 50 750 71 HOH HOH . Y 10 HOH A 51 751 72 HOH HOH . Y 10 HOH A 52 752 74 HOH HOH . Y 10 HOH A 53 753 75 HOH HOH . Y 10 HOH A 54 754 78 HOH HOH . Y 10 HOH A 55 755 81 HOH HOH . Y 10 HOH A 56 756 86 HOH HOH . Y 10 HOH A 57 757 87 HOH HOH . Y 10 HOH A 58 758 88 HOH HOH . Y 10 HOH A 59 759 89 HOH HOH . Y 10 HOH A 60 760 91 HOH HOH . Y 10 HOH A 61 761 97 HOH HOH . Y 10 HOH A 62 762 98 HOH HOH . Y 10 HOH A 63 763 99 HOH HOH . Y 10 HOH A 64 764 100 HOH HOH . Y 10 HOH A 65 765 101 HOH HOH . Y 10 HOH A 66 766 105 HOH HOH . Y 10 HOH A 67 767 108 HOH HOH . Y 10 HOH A 68 768 109 HOH HOH . Y 10 HOH A 69 769 111 HOH HOH . Z 10 HOH B 1 301 3 HOH HOH . Z 10 HOH B 2 302 4 HOH HOH . Z 10 HOH B 3 303 7 HOH HOH . Z 10 HOH B 4 304 9 HOH HOH . Z 10 HOH B 5 305 14 HOH HOH . Z 10 HOH B 6 306 16 HOH HOH . Z 10 HOH B 7 307 18 HOH HOH . Z 10 HOH B 8 308 19 HOH HOH . Z 10 HOH B 9 309 22 HOH HOH . Z 10 HOH B 10 310 26 HOH HOH . Z 10 HOH B 11 311 27 HOH HOH . Z 10 HOH B 12 312 42 HOH HOH . Z 10 HOH B 13 313 47 HOH HOH . Z 10 HOH B 14 314 54 HOH HOH . Z 10 HOH B 15 315 55 HOH HOH . Z 10 HOH B 16 316 56 HOH HOH . Z 10 HOH B 17 317 66 HOH HOH . Z 10 HOH B 18 318 67 HOH HOH . Z 10 HOH B 19 319 68 HOH HOH . Z 10 HOH B 20 320 73 HOH HOH . Z 10 HOH B 21 321 76 HOH HOH . Z 10 HOH B 22 322 77 HOH HOH . Z 10 HOH B 23 323 79 HOH HOH . Z 10 HOH B 24 324 80 HOH HOH . Z 10 HOH B 25 325 82 HOH HOH . Z 10 HOH B 26 326 83 HOH HOH . Z 10 HOH B 27 327 84 HOH HOH . Z 10 HOH B 28 328 85 HOH HOH . Z 10 HOH B 29 329 90 HOH HOH . Z 10 HOH B 30 330 92 HOH HOH . Z 10 HOH B 31 331 93 HOH HOH . Z 10 HOH B 32 332 94 HOH HOH . Z 10 HOH B 33 333 95 HOH HOH . Z 10 HOH B 34 334 96 HOH HOH . Z 10 HOH B 35 335 102 HOH HOH . Z 10 HOH B 36 336 106 HOH HOH . Z 10 HOH B 37 337 107 HOH HOH . Z 10 HOH B 38 338 110 HOH HOH . AA 10 HOH C 1 201 103 HOH HOH . AA 10 HOH C 2 202 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . X 8 10.045 -18.642 22.417 1 67.19 ? C18 OLC 101 C 1 HETATM 2 C C10 OLC . . . X 8 1.99 -19.189 19.598 1 65.64 ? C10 OLC 101 C 1 HETATM 3 C C9 OLC . . . X 8 0.797 -19.77 19.615 1 67.4 ? C9 OLC 101 C 1 HETATM 4 C C17 OLC . . . X 8 8.891 -17.75 21.995 1 66.48 ? C17 OLC 101 C 1 HETATM 5 C C11 OLC . . . X 8 2.705 -18.835 20.872 1 65.72 ? C11 OLC 101 C 1 HETATM 6 C C8 OLC . . . X 8 0.034 -20.157 20.864 1 67.46 ? C8 OLC 101 C 1 HETATM 7 C C24 OLC . . . X 8 -10.84 -24.99 21.103 1 90.93 ? C24 OLC 101 C 1 HETATM 8 C C16 OLC . . . X 8 8.702 -17.843 20.477 1 66.68 ? C16 OLC 101 C 1 HETATM 9 C C12 OLC . . . X 8 3.998 -18.161 20.466 1 65.1 ? C12 OLC 101 C 1 HETATM 10 C C7 OLC . . . X 8 -1.302 -20.729 20.398 1 68.66 ? C7 OLC 101 C 1 HETATM 11 C C15 OLC . . . X 8 7.251 -17.598 20.053 1 66.37 ? C15 OLC 101 C 1 HETATM 12 C C13 OLC . . . X 8 5.215 -18.901 21.007 1 65.92 ? C13 OLC 101 C 1 HETATM 13 C C6 OLC . . . X 8 -1.64 -22.066 21.049 1 70.45 ? C6 OLC 101 C 1 HETATM 14 C C14 OLC . . . X 8 6.402 -18.879 20.019 1 67.05 ? C14 OLC 101 C 1 HETATM 15 C C5 OLC . . . X 8 -2.685 -22.827 20.233 1 73.2 ? C5 OLC 101 C 1 HETATM 16 C C4 OLC . . . X 8 -3.757 -21.942 19.591 1 74.47 ? C4 OLC 101 C 1 HETATM 17 C C3 OLC . . . X 8 -5.116 -22.252 20.226 1 77.7 ? C3 OLC 101 C 1 HETATM 18 C C2 OLC . . . X 8 -6.306 -22.258 19.256 1 80.48 ? C2 OLC 101 C 1 HETATM 19 C C21 OLC . . . X 8 -9.935 -22.648 20.67 1 88.71 ? C21 OLC 101 C 1 HETATM 20 C C1 OLC . . . X 8 -7.528 -22.92 19.883 1 83.38 ? C1 OLC 101 C 1 HETATM 21 C C22 OLC . . . X 8 -10.906 -23.738 20.196 1 89.65 ? C22 OLC 101 C 1 HETATM 22 O O19 OLC . . . X 8 -7.401 -23.911 20.572 1 83.38 ? O19 OLC 101 C 1 HETATM 23 O O25 OLC . . . X 8 -11.394 -24.804 22.431 1 92.52 ? O25 OLC 101 C 1 HETATM 24 O O23 OLC . . . X 8 -12.222 -23.165 20.125 1 89.24 ? O23 OLC 101 C 1 HETATM 25 O O20 OLC . . . X 8 -8.897 -22.428 19.69 1 87.05 ? O20 OLC 101 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #