data_4FAK # _model_server_result.job_id 61DFf0HWKMrqmghthm-x8w _model_server_result.datetime_utc '2024-11-04 22:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4FAK # _exptl.entry_id 4FAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FAK _cell.length_a 77.8 _cell.length_b 84.29 _cell.length_c 55.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 27.865 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 298 n n N HN1 SAM sing 299 n n N HN2 SAM sing 300 n n CA C SAM sing 301 n n CA CB SAM sing 302 n n CA HA SAM sing 303 n n C O SAM doub 304 n n C OXT SAM sing 305 n n CB CG SAM sing 306 n n CB HB1 SAM sing 307 n n CB HB2 SAM sing 308 n n CG SD SAM sing 309 n n CG HG1 SAM sing 310 n n CG HG2 SAM sing 311 n n SD CE SAM sing 312 n n SD C5' SAM sing 313 n n CE HE1 SAM sing 314 n n CE HE2 SAM sing 315 n n CE HE3 SAM sing 316 n n C5' C4' SAM sing 317 n n C5' "H5'1" SAM sing 318 n n C5' "H5'2" SAM sing 319 n n C4' O4' SAM sing 320 n n C4' C3' SAM sing 321 n n C4' H4' SAM sing 322 n n O4' C1' SAM sing 323 n n C3' O3' SAM sing 324 n n C3' C2' SAM sing 325 n n C3' H3' SAM sing 326 n n O3' HO3' SAM sing 327 n n C2' O2' SAM sing 328 n n C2' C1' SAM sing 329 n n C2' H2' SAM sing 330 n n O2' HO2' SAM sing 331 n n C1' N9 SAM sing 332 n n C1' H1' SAM sing 333 n n N9 C8 SAM sing 334 n y N9 C4 SAM sing 335 n y C8 N7 SAM doub 336 n y C8 H8 SAM sing 337 n n N7 C5 SAM sing 338 n y C5 C6 SAM sing 339 n y C5 C4 SAM doub 340 n y C6 N6 SAM sing 341 n n C6 N1 SAM doub 342 n y N6 HN61 SAM sing 343 n n N6 HN62 SAM sing 344 n n N1 C2 SAM sing 345 n y C2 N3 SAM doub 346 n y C2 H2 SAM sing 347 n n N3 C4 SAM sing 348 n y # _atom_sites.entry_id 4FAK _atom_sites.fract_transf_matrix[1][1] 0.012853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 201 1 SAM SAM . C 3 PG4 A 1 202 3 PG4 TMP . D 4 PO4 A 1 203 5 PO4 PO4 . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . E 5 HOH A 79 379 79 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 82 HOH HOH . E 5 HOH A 83 383 83 HOH HOH . E 5 HOH A 84 384 84 HOH HOH . E 5 HOH A 85 385 85 HOH HOH . E 5 HOH A 86 386 86 HOH HOH . E 5 HOH A 87 387 87 HOH HOH . E 5 HOH A 88 388 88 HOH HOH . E 5 HOH A 89 389 89 HOH HOH . E 5 HOH A 90 390 90 HOH HOH . E 5 HOH A 91 391 91 HOH HOH . E 5 HOH A 92 392 92 HOH HOH . E 5 HOH A 93 393 93 HOH HOH . E 5 HOH A 94 394 94 HOH HOH . E 5 HOH A 95 395 95 HOH HOH . E 5 HOH A 96 396 96 HOH HOH . E 5 HOH A 97 397 97 HOH HOH . E 5 HOH A 98 398 98 HOH HOH . E 5 HOH A 99 399 99 HOH HOH . E 5 HOH A 100 400 100 HOH HOH . E 5 HOH A 101 401 101 HOH HOH . E 5 HOH A 102 402 102 HOH HOH . E 5 HOH A 103 403 103 HOH HOH . E 5 HOH A 104 404 104 HOH HOH . E 5 HOH A 105 405 105 HOH HOH . E 5 HOH A 106 406 106 HOH HOH . E 5 HOH A 107 407 107 HOH HOH . E 5 HOH A 108 408 108 HOH HOH . E 5 HOH A 109 409 109 HOH HOH . E 5 HOH A 110 410 110 HOH HOH . E 5 HOH A 111 411 111 HOH HOH . E 5 HOH A 112 412 112 HOH HOH . E 5 HOH A 113 413 113 HOH HOH . E 5 HOH A 114 414 114 HOH HOH . E 5 HOH A 115 415 115 HOH HOH . E 5 HOH A 116 416 116 HOH HOH . E 5 HOH A 117 417 117 HOH HOH . E 5 HOH A 118 418 118 HOH HOH . E 5 HOH A 119 419 119 HOH HOH . E 5 HOH A 120 420 120 HOH HOH . E 5 HOH A 121 421 121 HOH HOH . E 5 HOH A 122 422 122 HOH HOH . E 5 HOH A 123 423 123 HOH HOH . E 5 HOH A 124 424 124 HOH HOH . E 5 HOH A 125 425 125 HOH HOH . E 5 HOH A 126 426 126 HOH HOH . E 5 HOH A 127 427 127 HOH HOH . E 5 HOH A 128 428 128 HOH HOH . E 5 HOH A 129 429 129 HOH HOH . E 5 HOH A 130 430 130 HOH HOH . E 5 HOH A 131 431 131 HOH HOH . E 5 HOH A 132 432 132 HOH HOH . E 5 HOH A 133 433 133 HOH HOH . E 5 HOH A 134 434 134 HOH HOH . E 5 HOH A 135 435 135 HOH HOH . E 5 HOH A 136 436 136 HOH HOH . E 5 HOH A 137 437 137 HOH HOH . E 5 HOH A 138 438 138 HOH HOH . E 5 HOH A 139 439 139 HOH HOH . E 5 HOH A 140 440 140 HOH HOH . E 5 HOH A 141 441 141 HOH HOH . E 5 HOH A 142 442 142 HOH HOH . E 5 HOH A 143 443 143 HOH HOH . E 5 HOH A 144 444 144 HOH HOH . E 5 HOH A 145 445 145 HOH HOH . E 5 HOH A 146 446 146 HOH HOH . E 5 HOH A 147 447 147 HOH HOH . E 5 HOH A 148 448 148 HOH HOH . E 5 HOH A 149 449 149 HOH HOH . E 5 HOH A 150 450 150 HOH HOH . E 5 HOH A 151 451 151 HOH HOH . E 5 HOH A 152 452 152 HOH HOH . E 5 HOH A 153 453 153 HOH HOH . E 5 HOH A 154 454 154 HOH HOH . E 5 HOH A 155 455 155 HOH HOH . E 5 HOH A 156 456 156 HOH HOH . E 5 HOH A 157 457 157 HOH HOH . E 5 HOH A 158 458 158 HOH HOH . E 5 HOH A 159 459 159 HOH HOH . E 5 HOH A 160 460 160 HOH HOH . E 5 HOH A 161 461 161 HOH HOH . E 5 HOH A 162 462 162 HOH HOH . E 5 HOH A 163 463 163 HOH HOH . E 5 HOH A 164 464 164 HOH HOH . E 5 HOH A 165 465 165 HOH HOH . E 5 HOH A 166 466 166 HOH HOH . E 5 HOH A 167 467 167 HOH HOH . E 5 HOH A 168 468 168 HOH HOH . E 5 HOH A 169 469 169 HOH HOH . E 5 HOH A 170 470 170 HOH HOH . E 5 HOH A 171 471 171 HOH HOH . E 5 HOH A 172 472 172 HOH HOH . E 5 HOH A 173 473 173 HOH HOH . E 5 HOH A 174 474 174 HOH HOH . E 5 HOH A 175 475 175 HOH HOH . E 5 HOH A 176 476 176 HOH HOH . E 5 HOH A 177 477 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -3.623 -7.08 -0.952 1 44.08 ? N SAM 201 A 1 HETATM 2 C CA SAM . . . B 2 -4.707 -7.68 -0.1 1 40.69 ? CA SAM 201 A 1 HETATM 3 C C SAM . . . B 2 -5.394 -6.546 0.755 1 41.21 ? C SAM 201 A 1 HETATM 4 O O SAM . . . B 2 -4.822 -5.404 0.491 1 46.94 ? O SAM 201 A 1 HETATM 5 O OXT SAM . . . B 2 -6.447 -6.842 1.628 1 39.88 ? OXT SAM 201 A 1 HETATM 6 C CB SAM . . . B 2 -4.111 -8.818 0.811 1 39.33 ? CB SAM 201 A 1 HETATM 7 C CG SAM . . . B 2 -5.128 -9.542 1.727 1 32.72 ? CG SAM 201 A 1 HETATM 8 S SD SAM . . . B 2 -4.649 -10.892 2.911 1 34.01 ? SD SAM 201 A 1 HETATM 9 C CE SAM . . . B 2 -3.302 -11.883 2.1 1 31.81 ? CE SAM 201 A 1 HETATM 10 C C5' SAM . . . B 2 -6.077 -11.994 3.111 1 25.11 ? C5' SAM 201 A 1 HETATM 11 C C4' SAM . . . B 2 -7.057 -11.548 4.198 1 20.91 ? C4' SAM 201 A 1 HETATM 12 O O4' SAM . . . B 2 -6.495 -11.698 5.457 1 22.44 ? O4' SAM 201 A 1 HETATM 13 C C3' SAM . . . B 2 -7.427 -10.07 4.109 1 21.71 ? C3' SAM 201 A 1 HETATM 14 O O3' SAM . . . B 2 -8.525 -9.953 3.284 1 25.01 ? O3' SAM 201 A 1 HETATM 15 C C2' SAM . . . B 2 -7.726 -9.703 5.566 1 25.55 ? C2' SAM 201 A 1 HETATM 16 O O2' SAM . . . B 2 -9.05 -9.948 5.884 1 18.96 ? O2' SAM 201 A 1 HETATM 17 C C1' SAM . . . B 2 -6.814 -10.649 6.346 1 23.19 ? C1' SAM 201 A 1 HETATM 18 N N9 SAM . . . B 2 -5.57 -9.914 6.837 1 24.95 ? N9 SAM 201 A 1 HETATM 19 C C8 SAM . . . B 2 -4.263 -10.172 6.476 1 22.37 ? C8 SAM 201 A 1 HETATM 20 N N7 SAM . . . B 2 -3.451 -9.354 7.106 1 18.07 ? N7 SAM 201 A 1 HETATM 21 C C5 SAM . . . B 2 -4.199 -8.561 7.89 1 19.46 ? C5 SAM 201 A 1 HETATM 22 C C6 SAM . . . B 2 -3.922 -7.514 8.801 1 19.29 ? C6 SAM 201 A 1 HETATM 23 N N6 SAM . . . B 2 -2.668 -7.074 9.077 1 21.29 ? N6 SAM 201 A 1 HETATM 24 N N1 SAM . . . B 2 -4.981 -6.904 9.463 1 19.42 ? N1 SAM 201 A 1 HETATM 25 C C2 SAM . . . B 2 -6.268 -7.256 9.256 1 22.47 ? C2 SAM 201 A 1 HETATM 26 N N3 SAM . . . B 2 -6.531 -8.241 8.373 1 20.1 ? N3 SAM 201 A 1 HETATM 27 C C4 SAM . . . B 2 -5.537 -8.902 7.695 1 19.38 ? C4 SAM 201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #