data_4FAL # _model_server_result.job_id ElFae0gaCEEngOstyejPOw _model_server_result.datetime_utc '2024-11-28 18:14:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FAL # _exptl.entry_id 4FAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FAL _cell.length_a 58.687 _cell.length_b 64.703 _cell.length_c 96.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 289 n n PA O2A NAP sing 290 n n PA O5B NAP sing 291 n n PA O3 NAP sing 292 n n O2A HOA2 NAP sing 293 n n O5B C5B NAP sing 294 n n C5B C4B NAP sing 295 n n C5B H51A NAP sing 296 n n C5B H52A NAP sing 297 n n C4B O4B NAP sing 298 n n C4B C3B NAP sing 299 n n C4B H4B NAP sing 300 n n O4B C1B NAP sing 301 n n C3B O3B NAP sing 302 n n C3B C2B NAP sing 303 n n C3B H3B NAP sing 304 n n O3B HO3A NAP sing 305 n n C2B O2B NAP sing 306 n n C2B C1B NAP sing 307 n n C2B H2B NAP sing 308 n n O2B P2B NAP sing 309 n n C1B N9A NAP sing 310 n n C1B H1B NAP sing 311 n n N9A C8A NAP sing 312 n y N9A C4A NAP sing 313 n y C8A N7A NAP doub 314 n y C8A H8A NAP sing 315 n n N7A C5A NAP sing 316 n y C5A C6A NAP sing 317 n y C5A C4A NAP doub 318 n y C6A N6A NAP sing 319 n n C6A N1A NAP doub 320 n y N6A H61A NAP sing 321 n n N6A H62A NAP sing 322 n n N1A C2A NAP sing 323 n y C2A N3A NAP doub 324 n y C2A H2A NAP sing 325 n n N3A C4A NAP sing 326 n y O3 PN NAP sing 327 n n PN O1N NAP doub 328 n n PN O2N NAP sing 329 n n PN O5D NAP sing 330 n n O5D C5D NAP sing 331 n n C5D C4D NAP sing 332 n n C5D H51N NAP sing 333 n n C5D H52N NAP sing 334 n n C4D O4D NAP sing 335 n n C4D C3D NAP sing 336 n n C4D H4D NAP sing 337 n n O4D C1D NAP sing 338 n n C3D O3D NAP sing 339 n n C3D C2D NAP sing 340 n n C3D H3D NAP sing 341 n n O3D HO3N NAP sing 342 n n C2D O2D NAP sing 343 n n C2D C1D NAP sing 344 n n C2D H2D NAP sing 345 n n O2D HO2N NAP sing 346 n n C1D N1N NAP sing 347 n n C1D H1D NAP sing 348 n n N1N C2N NAP sing 349 n y N1N C6N NAP doub 350 n y C2N C3N NAP doub 351 n y C2N H2N NAP sing 352 n n C3N C7N NAP sing 353 n n C3N C4N NAP sing 354 n y C7N O7N NAP doub 355 n n C7N N7N NAP sing 356 n n N7N H71N NAP sing 357 n n N7N H72N NAP sing 358 n n C4N C5N NAP doub 359 n y C4N H4N NAP sing 360 n n C5N C6N NAP sing 361 n y C5N H5N NAP sing 362 n n C6N H6N NAP sing 363 n n P2B O1X NAP doub 364 n n P2B O2X NAP sing 365 n n P2B O3X NAP sing 366 n n O2X HOP2 NAP sing 367 n n O3X HOP3 NAP sing 368 n n # _atom_sites.entry_id 4FAL _atom_sites.fract_transf_matrix[1][1] 0.01704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 700 NAP NAP . C 3 0T0 A 1 402 1 0T0 DRG . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 1 EDO EDO . F 4 EDO A 1 405 1 EDO EDO . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 13 HOH HOH . G 5 HOH A 11 511 14 HOH HOH . G 5 HOH A 12 512 15 HOH HOH . G 5 HOH A 13 513 16 HOH HOH . G 5 HOH A 14 514 17 HOH HOH . G 5 HOH A 15 515 18 HOH HOH . G 5 HOH A 16 516 20 HOH HOH . G 5 HOH A 17 517 21 HOH HOH . G 5 HOH A 18 518 22 HOH HOH . G 5 HOH A 19 519 23 HOH HOH . G 5 HOH A 20 520 24 HOH HOH . G 5 HOH A 21 521 26 HOH HOH . G 5 HOH A 22 522 27 HOH HOH . G 5 HOH A 23 523 28 HOH HOH . G 5 HOH A 24 524 30 HOH HOH . G 5 HOH A 25 525 32 HOH HOH . G 5 HOH A 26 526 34 HOH HOH . G 5 HOH A 27 527 35 HOH HOH . G 5 HOH A 28 528 36 HOH HOH . G 5 HOH A 29 529 37 HOH HOH . G 5 HOH A 30 530 38 HOH HOH . G 5 HOH A 31 531 39 HOH HOH . G 5 HOH A 32 532 41 HOH HOH . G 5 HOH A 33 533 42 HOH HOH . G 5 HOH A 34 534 44 HOH HOH . G 5 HOH A 35 535 45 HOH HOH . G 5 HOH A 36 536 46 HOH HOH . G 5 HOH A 37 537 47 HOH HOH . G 5 HOH A 38 538 48 HOH HOH . G 5 HOH A 39 539 50 HOH HOH . G 5 HOH A 40 540 53 HOH HOH . G 5 HOH A 41 541 55 HOH HOH . G 5 HOH A 42 542 56 HOH HOH . G 5 HOH A 43 543 57 HOH HOH . G 5 HOH A 44 544 58 HOH HOH . G 5 HOH A 45 545 60 HOH HOH . G 5 HOH A 46 546 61 HOH HOH . G 5 HOH A 47 547 62 HOH HOH . G 5 HOH A 48 548 63 HOH HOH . G 5 HOH A 49 549 64 HOH HOH . G 5 HOH A 50 550 67 HOH HOH . G 5 HOH A 51 551 68 HOH HOH . G 5 HOH A 52 552 69 HOH HOH . G 5 HOH A 53 553 70 HOH HOH . G 5 HOH A 54 554 72 HOH HOH . G 5 HOH A 55 555 74 HOH HOH . G 5 HOH A 56 556 77 HOH HOH . G 5 HOH A 57 557 78 HOH HOH . G 5 HOH A 58 558 79 HOH HOH . G 5 HOH A 59 559 80 HOH HOH . G 5 HOH A 60 560 82 HOH HOH . G 5 HOH A 61 561 83 HOH HOH . G 5 HOH A 62 562 84 HOH HOH . G 5 HOH A 63 563 85 HOH HOH . G 5 HOH A 64 564 86 HOH HOH . G 5 HOH A 65 565 88 HOH HOH . G 5 HOH A 66 566 90 HOH HOH . G 5 HOH A 67 567 91 HOH HOH . G 5 HOH A 68 568 92 HOH HOH . G 5 HOH A 69 569 93 HOH HOH . G 5 HOH A 70 570 95 HOH HOH . G 5 HOH A 71 571 96 HOH HOH . G 5 HOH A 72 572 97 HOH HOH . G 5 HOH A 73 573 98 HOH HOH . G 5 HOH A 74 574 99 HOH HOH . G 5 HOH A 75 575 101 HOH HOH . G 5 HOH A 76 576 103 HOH HOH . G 5 HOH A 77 577 104 HOH HOH . G 5 HOH A 78 578 107 HOH HOH . G 5 HOH A 79 579 108 HOH HOH . G 5 HOH A 80 580 112 HOH HOH . G 5 HOH A 81 581 114 HOH HOH . G 5 HOH A 82 582 116 HOH HOH . G 5 HOH A 83 583 118 HOH HOH . G 5 HOH A 84 584 119 HOH HOH . G 5 HOH A 85 585 120 HOH HOH . G 5 HOH A 86 586 121 HOH HOH . G 5 HOH A 87 587 122 HOH HOH . G 5 HOH A 88 588 123 HOH HOH . G 5 HOH A 89 589 124 HOH HOH . G 5 HOH A 90 590 125 HOH HOH . G 5 HOH A 91 591 126 HOH HOH . G 5 HOH A 92 592 127 HOH HOH . G 5 HOH A 93 593 129 HOH HOH . G 5 HOH A 94 594 130 HOH HOH . G 5 HOH A 95 595 131 HOH HOH . G 5 HOH A 96 596 132 HOH HOH . G 5 HOH A 97 597 133 HOH HOH . G 5 HOH A 98 598 134 HOH HOH . G 5 HOH A 99 599 135 HOH HOH . G 5 HOH A 100 600 136 HOH HOH . G 5 HOH A 101 601 138 HOH HOH . G 5 HOH A 102 602 139 HOH HOH . G 5 HOH A 103 603 140 HOH HOH . G 5 HOH A 104 604 141 HOH HOH . G 5 HOH A 105 605 142 HOH HOH . G 5 HOH A 106 606 144 HOH HOH . G 5 HOH A 107 607 146 HOH HOH . G 5 HOH A 108 608 147 HOH HOH . G 5 HOH A 109 609 148 HOH HOH . G 5 HOH A 110 610 149 HOH HOH . G 5 HOH A 111 611 151 HOH HOH . G 5 HOH A 112 612 152 HOH HOH . G 5 HOH A 113 613 154 HOH HOH . G 5 HOH A 114 614 155 HOH HOH . G 5 HOH A 115 615 156 HOH HOH . G 5 HOH A 116 616 157 HOH HOH . G 5 HOH A 117 617 158 HOH HOH . G 5 HOH A 118 618 159 HOH HOH . G 5 HOH A 119 619 160 HOH HOH . G 5 HOH A 120 620 161 HOH HOH . G 5 HOH A 121 621 162 HOH HOH . G 5 HOH A 122 622 163 HOH HOH . G 5 HOH A 123 623 164 HOH HOH . G 5 HOH A 124 624 166 HOH HOH . G 5 HOH A 125 625 167 HOH HOH . G 5 HOH A 126 626 168 HOH HOH . G 5 HOH A 127 627 169 HOH HOH . G 5 HOH A 128 628 170 HOH HOH . G 5 HOH A 129 629 173 HOH HOH . G 5 HOH A 130 630 175 HOH HOH . G 5 HOH A 131 631 176 HOH HOH . G 5 HOH A 132 632 177 HOH HOH . G 5 HOH A 133 633 179 HOH HOH . G 5 HOH A 134 634 180 HOH HOH . G 5 HOH A 135 635 181 HOH HOH . G 5 HOH A 136 636 182 HOH HOH . G 5 HOH A 137 637 183 HOH HOH . G 5 HOH A 138 638 185 HOH HOH . G 5 HOH A 139 639 186 HOH HOH . G 5 HOH A 140 640 196 HOH HOH . G 5 HOH A 141 641 198 HOH HOH . G 5 HOH A 142 642 199 HOH HOH . G 5 HOH A 143 643 200 HOH HOH . G 5 HOH A 144 644 201 HOH HOH . G 5 HOH A 145 645 203 HOH HOH . G 5 HOH A 146 646 204 HOH HOH . G 5 HOH A 147 647 206 HOH HOH . G 5 HOH A 148 648 208 HOH HOH . G 5 HOH A 149 649 209 HOH HOH . G 5 HOH A 150 650 213 HOH HOH . G 5 HOH A 151 651 214 HOH HOH . G 5 HOH A 152 652 215 HOH HOH . G 5 HOH A 153 653 217 HOH HOH . G 5 HOH A 154 654 218 HOH HOH . G 5 HOH A 155 655 221 HOH HOH . G 5 HOH A 156 656 223 HOH HOH . G 5 HOH A 157 657 224 HOH HOH . G 5 HOH A 158 658 225 HOH HOH . G 5 HOH A 159 659 226 HOH HOH . G 5 HOH A 160 660 227 HOH HOH . G 5 HOH A 161 661 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 1.964 3.747 3.025 1 19.4 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 3.4 3.464 3.113 1 17.63 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 1.492 5.154 2.857 1 19.42 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 1.379 2.829 1.806 1 20.22 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 0.034 2.983 1.497 1 17.23 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 -0.379 1.915 0.374 1 22.11 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 0.546 2.133 -0.671 1 21.29 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 -0.084 0.534 0.892 1 22.06 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 -1.239 0.004 1.517 1 20.29 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 0.412 -0.212 -0.361 1 23.65 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 -0.64 -1.046 -0.845 1 20.8 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 0.665 0.899 -1.39 1 25.26 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 1.984 0.796 -2.119 1 23.61 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 3.176 0.488 -1.663 1 24.62 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 4.091 0.551 -2.615 1 22.44 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 3.426 0.861 -3.72 1 25.15 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 3.828 1.012 -5.057 1 24.84 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 5.116 0.894 -5.441 1 22.16 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 2.901 1.386 -5.964 1 25.32 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 1.453 1.497 -5.731 1 22.73 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 1.135 1.361 -4.331 1 26.27 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 2.106 1.034 -3.385 1 25.14 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 1.23 3.036 4.201 1 18.03 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 1.07 3.312 5.78 1 19.64 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 0.753 1.96 6.428 1 18.52 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 0.134 4.435 5.999 1 22.09 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 2.509 3.839 6.194 1 19.18 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 3.642 2.987 6.323 1 21.64 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 4.091 2.528 7.744 1 19.42 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 4.235 3.649 8.591 1 19.92 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 3.016 1.734 8.445 1 21.32 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 2.94 0.403 7.861 1 16.12 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 3.555 1.655 9.848 1 17.41 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 4.744 0.861 9.889 1 16.13 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 3.957 3.147 9.915 1 16.81 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 2.92 4.021 10.422 1 18.1 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 3.08 4.598 11.653 1 18.72 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 2.104 5.435 12.219 1 16.72 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 2.34 6.045 13.553 1 17.03 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 1.404 6.59 14.162 1 17.18 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 3.624 6.14 13.891 1 15.64 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 0.925 5.721 11.51 1 17.89 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 0.82 5.18 10.201 1 18.31 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 1.785 4.364 9.658 1 19.31 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 -0.141 -2.651 -1.068 1 25.9 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 0.058 -3.196 0.342 1 21.62 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 -1.34 -3.29 -1.743 1 28.66 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 1.209 -2.622 -1.907 1 25.92 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #