data_4FBH # _model_server_result.job_id GtGYdth9Q1BO8D57tG4KXA _model_server_result.datetime_utc '2025-03-05 19:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4FBH # _exptl.entry_id 4FBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.62 _cell.angle_gamma 90 _cell.entry_id 4FBH _cell.length_a 88.36 _cell.length_b 62.59 _cell.length_c 53.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4FBH _atom_sites.fract_transf_matrix[1][1] 0.011317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003813 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . C 3 HOH A 69 469 470 HOH HOH . C 3 HOH A 70 470 471 HOH HOH . C 3 HOH A 71 471 472 HOH HOH . C 3 HOH A 72 472 473 HOH HOH . C 3 HOH A 73 473 475 HOH HOH . C 3 HOH A 74 474 476 HOH HOH . C 3 HOH A 75 475 478 HOH HOH . C 3 HOH A 76 476 479 HOH HOH . C 3 HOH A 77 477 480 HOH HOH . C 3 HOH A 78 478 481 HOH HOH . C 3 HOH A 79 479 482 HOH HOH . C 3 HOH A 80 480 483 HOH HOH . C 3 HOH A 81 481 484 HOH HOH . C 3 HOH A 82 482 487 HOH HOH . C 3 HOH A 83 483 489 HOH HOH . C 3 HOH A 84 484 490 HOH HOH . C 3 HOH A 85 485 491 HOH HOH . C 3 HOH A 86 486 492 HOH HOH . C 3 HOH A 87 487 493 HOH HOH . C 3 HOH A 88 488 494 HOH HOH . C 3 HOH A 89 489 496 HOH HOH . C 3 HOH A 90 490 497 HOH HOH . C 3 HOH A 91 491 498 HOH HOH . C 3 HOH A 92 492 499 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 23.086 3.795 0.605 1 75.46 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 22.416 2.724 -0.228 1 64.86 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 24.603 3.84 0.627 1 49.72 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 22.519 5.158 0.229 1 45.38 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 22.537 3.718 2.098 1 53.08 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 22.147 4.894 2.784 1 45.27 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 21.957 4.636 4.249 1 40.76 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 21.173 3.43 4.437 1 33.92 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 23.22 4.367 5.047 1 34.02 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 23.939 5.552 5.359 1 32.38 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 22.671 3.652 6.271 1 30.99 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 22.094 4.593 7.162 1 23.66 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 21.536 2.822 5.658 1 31.51 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 21.934 1.421 5.399 1 28.1 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 22.19 0.844 4.207 1 29.82 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 22.51 -0.473 4.349 1 29.04 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 22.46 -0.759 5.661 1 26.45 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 22.678 -1.951 6.521 1 23.33 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 23.044 -3.151 6.008 1 21.82 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 22.506 -1.803 7.851 1 22.89 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 22.166 -0.632 8.408 1 19.73 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 21.953 0.487 7.694 1 24.16 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 22.077 0.491 6.343 1 26.98 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #