data_4FBZ # _model_server_result.job_id 55rPZ4k_KsSiSGa8JW2Ztw _model_server_result.datetime_utc '2024-11-25 13:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4FBZ # _exptl.entry_id 4FBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FBZ _cell.length_a 111.71 _cell.length_b 111.71 _cell.length_c 198.25 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.71 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.855 96.743698 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.345 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 556 n n C1 C6 RET sing 557 n n C1 C16 RET sing 558 n n C1 C17 RET sing 559 n n C2 C3 RET sing 560 n n C2 H21 RET sing 561 n n C2 H22 RET sing 562 n n C3 C4 RET sing 563 n n C3 H31 RET sing 564 n n C3 H32 RET sing 565 n n C4 C5 RET sing 566 n n C4 H41 RET sing 567 n n C4 H42 RET sing 568 n n C5 C6 RET doub 569 n n C5 C18 RET sing 570 n n C6 C7 RET sing 571 n n C7 C8 RET doub 572 e n C7 H7 RET sing 573 n n C8 C9 RET sing 574 n n C8 H8 RET sing 575 n n C9 C10 RET doub 576 e n C9 C19 RET sing 577 n n C10 C11 RET sing 578 n n C10 H10 RET sing 579 n n C11 C12 RET doub 580 e n C11 H11 RET sing 581 n n C12 C13 RET sing 582 n n C12 H12 RET sing 583 n n C13 C14 RET doub 584 e n C13 C20 RET sing 585 n n C14 C15 RET sing 586 n n C14 H14 RET sing 587 n n C15 O1 RET doub 588 n n C15 H15 RET sing 589 n n C16 H161 RET sing 590 n n C16 H162 RET sing 591 n n C16 H163 RET sing 592 n n C17 H171 RET sing 593 n n C17 H172 RET sing 594 n n C17 H173 RET sing 595 n n C18 H181 RET sing 596 n n C18 H182 RET sing 597 n n C18 H183 RET sing 598 n n C19 H191 RET sing 599 n n C19 H192 RET sing 600 n n C19 H193 RET sing 601 n n C20 H201 RET sing 602 n n C20 H202 RET sing 603 n n C20 H203 RET sing 604 n n # _atom_sites.entry_id 4FBZ _atom_sites.fract_transf_matrix[1][1] 0.008952 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 22B A 1 302 370 22B 22B . D 4 SQL A 1 303 380 SQL SQU . E 5 L2P A 1 304 390 L2P LP3 . F 6 BNG A 1 305 400 BNG BNG . G 6 BNG A 1 306 410 BNG BNG . H 7 SO4 A 1 307 700 SO4 SO4 . I 7 SO4 A 1 308 701 SO4 SO4 . J 7 SO4 A 1 309 702 SO4 SO4 . K 8 HOH A 1 601 601 HOH HOH . K 8 HOH A 2 602 602 HOH HOH . K 8 HOH A 3 603 603 HOH HOH . K 8 HOH A 4 604 604 HOH HOH . K 8 HOH A 5 605 605 HOH HOH . K 8 HOH A 6 606 606 HOH HOH . K 8 HOH A 7 607 607 HOH HOH . K 8 HOH A 8 608 608 HOH HOH . K 8 HOH A 9 609 609 HOH HOH . K 8 HOH A 10 610 610 HOH HOH . K 8 HOH A 11 611 611 HOH HOH . K 8 HOH A 12 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 51.394 14.551 32.021 1 38.14 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 52.375 14.201 30.8 1 38.82 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 53.668 13.52 31.034 1 35.89 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 53.732 12.556 32.207 1 34.41 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 52.835 12.838 33.422 1 35.38 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 51.716 13.759 33.41 1 34.31 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 50.911 13.927 34.733 1 32.73 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 49.85 14.718 34.99 1 32.61 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 49.047 14.898 36.186 1 31.56 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 48.025 15.808 36.079 1 31.45 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 47.06 16.174 37.082 1 33.82 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 46.127 17.087 36.875 1 31.68 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 45.11 17.514 37.848 1 34.13 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 44.291 18.495 37.395 1 34.82 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 43.195 19.202 38.051 1 35.93 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 51.554 16.067 32.162 1 35.84 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 49.997 14.236 31.432 1 35.32 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 53.315 12.002 34.616 1 34.07 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 49.336 14.108 37.446 1 33.93 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 45.014 16.919 39.248 1 34.14 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #