data_4FBZ # _model_server_result.job_id Vd_hLCnX3VvClLKsQ28TUw _model_server_result.datetime_utc '2024-11-25 13:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4FBZ # _exptl.entry_id 4FBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.718 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FBZ _cell.length_a 111.71 _cell.length_b 111.71 _cell.length_c 198.25 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.71 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.855 96.743698 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.345 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H50' _chem_comp.formula_weight 410.718 _chem_comp.id SQL _chem_comp.mon_nstd_flag . _chem_comp.name (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms squalene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 SQL sing 622 n n C1 C2 SQL sing 623 n n C2 C4 SQL doub 624 n n C4 C5 SQL sing 625 n n C5 C6 SQL sing 626 n n C6 C7 SQL sing 627 n n C8 C7 SQL sing 628 n n C7 C9 SQL doub 629 e n C9 C10 SQL sing 630 n n C10 C11 SQL sing 631 n n C11 C12 SQL sing 632 n n C13 C12 SQL sing 633 n n C12 C14 SQL doub 634 e n C14 C15 SQL sing 635 n n C15 C16 SQL sing 636 n n C16 C17 SQL sing 637 n n C17 C18 SQL doub 638 e n C18 C19 SQL sing 639 n n C18 C20 SQL sing 640 n n C20 C21 SQL sing 641 n n C21 C22 SQL sing 642 n n C22 C23 SQL doub 643 e n C23 C30 SQL sing 644 n n C23 C24 SQL sing 645 n n C24 C25 SQL sing 646 n n C25 C26 SQL sing 647 n n C26 C27 SQL doub 648 n n C27 C29 SQL sing 649 n n C27 C28 SQL sing 650 n n C1 H1 SQL sing 651 n n C1 H2 SQL sing 652 n n C1 H3 SQL sing 653 n n C3 H4 SQL sing 654 n n C3 H5 SQL sing 655 n n C3 H6 SQL sing 656 n n C4 H7 SQL sing 657 n n C5 H8 SQL sing 658 n n C6 H9 SQL sing 659 n n C8 H10 SQL sing 660 n n C8 H11 SQL sing 661 n n C8 H12 SQL sing 662 n n C9 H13 SQL sing 663 n n C10 H14 SQL sing 664 n n C11 H15 SQL sing 665 n n C13 H16 SQL sing 666 n n C13 H17 SQL sing 667 n n C13 H18 SQL sing 668 n n C14 H19 SQL sing 669 n n C15 H20 SQL sing 670 n n C15 H21 SQL sing 671 n n C16 H22 SQL sing 672 n n C17 H23 SQL sing 673 n n C19 H24 SQL sing 674 n n C19 H25 SQL sing 675 n n C19 H26 SQL sing 676 n n C20 H27 SQL sing 677 n n C21 H28 SQL sing 678 n n C22 H29 SQL sing 679 n n C24 H30 SQL sing 680 n n C25 H31 SQL sing 681 n n C25 H32 SQL sing 682 n n C26 H33 SQL sing 683 n n C28 H34 SQL sing 684 n n C28 H35 SQL sing 685 n n C28 H36 SQL sing 686 n n C29 H37 SQL sing 687 n n C29 H38 SQL sing 688 n n C29 H39 SQL sing 689 n n C30 H40 SQL sing 690 n n C30 H41 SQL sing 691 n n C30 H42 SQL sing 692 n n C5 H43 SQL sing 693 n n C6 H44 SQL sing 694 n n C10 H45 SQL sing 695 n n C11 H46 SQL sing 696 n n C16 H47 SQL sing 697 n n C20 H48 SQL sing 698 n n C21 H49 SQL sing 699 n n C24 H50 SQL sing 700 n n # _atom_sites.entry_id 4FBZ _atom_sites.fract_transf_matrix[1][1] 0.008952 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 22B A 1 302 370 22B 22B . D 4 SQL A 1 303 380 SQL SQU . E 5 L2P A 1 304 390 L2P LP3 . F 6 BNG A 1 305 400 BNG BNG . G 6 BNG A 1 306 410 BNG BNG . H 7 SO4 A 1 307 700 SO4 SO4 . I 7 SO4 A 1 308 701 SO4 SO4 . J 7 SO4 A 1 309 702 SO4 SO4 . K 8 HOH A 1 601 601 HOH HOH . K 8 HOH A 2 602 602 HOH HOH . K 8 HOH A 3 603 603 HOH HOH . K 8 HOH A 4 604 604 HOH HOH . K 8 HOH A 5 605 605 HOH HOH . K 8 HOH A 6 606 606 HOH HOH . K 8 HOH A 7 607 607 HOH HOH . K 8 HOH A 8 608 608 HOH HOH . K 8 HOH A 9 609 609 HOH HOH . K 8 HOH A 10 610 610 HOH HOH . K 8 HOH A 11 611 611 HOH HOH . K 8 HOH A 12 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQL . . . D 4 58.659 26.432 24.315 1 88.36 ? C1 SQL 303 A 1 HETATM 2 C C2 SQL . . . D 4 57.288 26.478 25.025 1 86.92 ? C2 SQL 303 A 1 HETATM 3 C C3 SQL . . . D 4 56.044 26.893 24.223 1 87.38 ? C3 SQL 303 A 1 HETATM 4 C C4 SQL . . . D 4 57.15 26.115 26.53 1 85.85 ? C4 SQL 303 A 1 HETATM 5 C C5 SQL . . . D 4 58.374 25.689 27.379 1 84.81 ? C5 SQL 303 A 1 HETATM 6 C C6 SQL . . . D 4 58.191 25.343 28.877 1 84.31 ? C6 SQL 303 A 1 HETATM 7 C C7 SQL . . . D 4 59.398 25.215 29.856 1 83.98 ? C7 SQL 303 A 1 HETATM 8 C C8 SQL . . . D 4 60.848 25.427 29.368 1 82.93 ? C8 SQL 303 A 1 HETATM 9 C C9 SQL . . . D 4 59.122 24.877 31.337 1 83.03 ? C9 SQL 303 A 1 HETATM 10 C C10 SQL . . . D 4 60.253 24.735 32.386 1 81.75 ? C10 SQL 303 A 1 HETATM 11 C C11 SQL . . . D 4 59.85 24.407 33.84 1 81.24 ? C11 SQL 303 A 1 HETATM 12 C C12 SQL . . . D 4 60.862 24.247 35.002 1 78.27 ? C12 SQL 303 A 1 HETATM 13 C C13 SQL . . . D 4 62.383 24.406 34.784 1 79.61 ? C13 SQL 303 A 1 HETATM 14 C C14 SQL . . . D 4 60.294 23.934 36.394 1 76.18 ? C14 SQL 303 A 1 HETATM 15 C C15 SQL . . . D 4 61.171 23.767 37.64 1 72.44 ? C15 SQL 303 A 1 HETATM 16 C C16 SQL . . . D 4 60.555 24.17 38.994 1 70.67 ? C16 SQL 303 A 1 HETATM 17 C C17 SQL . . . D 4 61.347 24.035 40.298 1 67.01 ? C17 SQL 303 A 1 HETATM 18 C C18 SQL . . . D 4 60.725 24.429 41.656 1 67.5 ? C18 SQL 303 A 1 HETATM 19 C C19 SQL . . . D 4 59.279 24.975 41.743 1 67.35 ? C19 SQL 303 A 1 HETATM 20 C C20 SQL . . . D 4 61.58 24.251 42.929 1 68.56 ? C20 SQL 303 A 1 HETATM 21 C C21 SQL . . . D 4 61.053 24.588 44.339 1 67.98 ? C21 SQL 303 A 1 HETATM 22 C C22 SQL . . . D 4 61.999 24.363 45.531 1 68.02 ? C22 SQL 303 A 1 HETATM 23 C C23 SQL . . . D 4 61.576 24.625 46.987 1 67.38 ? C23 SQL 303 A 1 HETATM 24 C C24 SQL . . . D 4 62.564 24.214 48.098 1 67.14 ? C24 SQL 303 A 1 HETATM 25 C C25 SQL . . . D 4 62.293 24.378 49.61 1 69.14 ? C25 SQL 303 A 1 HETATM 26 C C26 SQL . . . D 4 62.468 25.726 50.335 1 66.01 ? C26 SQL 303 A 1 HETATM 27 C C27 SQL . . . D 4 62.211 25.818 51.854 1 65.19 ? C27 SQL 303 A 1 HETATM 28 C C28 SQL . . . D 4 61.791 24.565 52.644 1 66.03 ? C28 SQL 303 A 1 HETATM 29 C C29 SQL . . . D 4 62.384 27.163 52.593 1 65.27 ? C29 SQL 303 A 1 HETATM 30 C C30 SQL . . . D 4 60.199 25.252 47.311 1 70.27 ? C30 SQL 303 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 30 #