data_4FBZ # _model_server_result.job_id 1QyRfB_IO5v6PzfS_mV71g _model_server_result.datetime_utc '2024-11-02 19:44:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4FBZ # _exptl.entry_id 4FBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DI-PHYTANYL-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FBZ _cell.length_a 111.71 _cell.length_b 111.71 _cell.length_c 198.25 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.71 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.855 96.743698 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.345 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C43 H88 O3' _chem_comp.formula_weight 653.157 _chem_comp.id L2P _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DI-PHYTANYL-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 L2P sing 319 n n C1 C2 L2P sing 320 n n C1 H12 L2P sing 321 n n C1 H11 L2P sing 322 n n O1 C11 L2P sing 323 n n C2 O2 L2P sing 324 n n C2 C3 L2P sing 325 n n C2 H2 L2P sing 326 n n O2 C41 L2P sing 327 n n C3 O3 L2P sing 328 n n C3 H32 L2P sing 329 n n C3 H31 L2P sing 330 n n O3 H3O L2P sing 331 n n C11 C12 L2P sing 332 n n C11 H112 L2P sing 333 n n C11 H111 L2P sing 334 n n C12 C13 L2P sing 335 n n C12 H122 L2P sing 336 n n C12 H121 L2P sing 337 n n C13 C14 L2P sing 338 n n C13 C15 L2P sing 339 n n C13 H13 L2P sing 340 n n C14 H143 L2P sing 341 n n C14 H142 L2P sing 342 n n C14 H141 L2P sing 343 n n C15 C16 L2P sing 344 n n C15 H152 L2P sing 345 n n C15 H151 L2P sing 346 n n C16 C17 L2P sing 347 n n C16 H162 L2P sing 348 n n C16 H161 L2P sing 349 n n C17 C18 L2P sing 350 n n C17 H172 L2P sing 351 n n C17 H171 L2P sing 352 n n C18 C19 L2P sing 353 n n C18 C20 L2P sing 354 n n C18 H18 L2P sing 355 n n C19 H193 L2P sing 356 n n C19 H192 L2P sing 357 n n C19 H191 L2P sing 358 n n C20 C21 L2P sing 359 n n C20 H202 L2P sing 360 n n C20 H201 L2P sing 361 n n C21 C22 L2P sing 362 n n C21 H212 L2P sing 363 n n C21 H211 L2P sing 364 n n C22 C23 L2P sing 365 n n C22 H222 L2P sing 366 n n C22 H221 L2P sing 367 n n C23 C24 L2P sing 368 n n C23 C25 L2P sing 369 n n C23 H23 L2P sing 370 n n C24 H243 L2P sing 371 n n C24 H242 L2P sing 372 n n C24 H241 L2P sing 373 n n C25 C26 L2P sing 374 n n C25 H252 L2P sing 375 n n C25 H251 L2P sing 376 n n C26 C27 L2P sing 377 n n C26 H262 L2P sing 378 n n C26 H261 L2P sing 379 n n C27 C28 L2P sing 380 n n C27 H272 L2P sing 381 n n C27 H271 L2P sing 382 n n C28 C29 L2P sing 383 n n C28 C30 L2P sing 384 n n C28 H28 L2P sing 385 n n C29 H293 L2P sing 386 n n C29 H292 L2P sing 387 n n C29 H291 L2P sing 388 n n C30 H303 L2P sing 389 n n C30 H302 L2P sing 390 n n C30 H301 L2P sing 391 n n C41 C42 L2P sing 392 n n C41 H412 L2P sing 393 n n C41 H411 L2P sing 394 n n C42 C43 L2P sing 395 n n C42 H422 L2P sing 396 n n C42 H421 L2P sing 397 n n C43 C44 L2P sing 398 n n C43 C45 L2P sing 399 n n C43 H43 L2P sing 400 n n C44 H443 L2P sing 401 n n C44 H442 L2P sing 402 n n C44 H441 L2P sing 403 n n C45 C46 L2P sing 404 n n C45 H452 L2P sing 405 n n C45 H451 L2P sing 406 n n C46 C47 L2P sing 407 n n C46 H462 L2P sing 408 n n C46 H461 L2P sing 409 n n C47 C48 L2P sing 410 n n C47 H472 L2P sing 411 n n C47 H471 L2P sing 412 n n C48 C49 L2P sing 413 n n C48 C50 L2P sing 414 n n C48 H48 L2P sing 415 n n C49 H493 L2P sing 416 n n C49 H492 L2P sing 417 n n C49 H491 L2P sing 418 n n C50 C51 L2P sing 419 n n C50 H502 L2P sing 420 n n C50 H501 L2P sing 421 n n C51 C52 L2P sing 422 n n C51 H512 L2P sing 423 n n C51 H511 L2P sing 424 n n C52 C53 L2P sing 425 n n C52 H522 L2P sing 426 n n C52 H521 L2P sing 427 n n C53 C54 L2P sing 428 n n C53 C55 L2P sing 429 n n C53 H53 L2P sing 430 n n C54 H543 L2P sing 431 n n C54 H542 L2P sing 432 n n C54 H541 L2P sing 433 n n C55 C56 L2P sing 434 n n C55 H552 L2P sing 435 n n C55 H551 L2P sing 436 n n C56 C57 L2P sing 437 n n C56 H562 L2P sing 438 n n C56 H561 L2P sing 439 n n C57 C58 L2P sing 440 n n C57 H572 L2P sing 441 n n C57 H571 L2P sing 442 n n C58 C59 L2P sing 443 n n C58 C60 L2P sing 444 n n C58 H58 L2P sing 445 n n C59 H593 L2P sing 446 n n C59 H592 L2P sing 447 n n C59 H591 L2P sing 448 n n C60 H603 L2P sing 449 n n C60 H602 L2P sing 450 n n C60 H601 L2P sing 451 n n # _atom_sites.entry_id 4FBZ _atom_sites.fract_transf_matrix[1][1] 0.008952 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 22B A 1 302 370 22B 22B . D 4 SQL A 1 303 380 SQL SQU . E 5 L2P A 1 304 390 L2P LP3 . F 6 BNG A 1 305 400 BNG BNG . G 6 BNG A 1 306 410 BNG BNG . H 7 SO4 A 1 307 700 SO4 SO4 . I 7 SO4 A 1 308 701 SO4 SO4 . J 7 SO4 A 1 309 702 SO4 SO4 . K 8 HOH A 1 601 601 HOH HOH . K 8 HOH A 2 602 602 HOH HOH . K 8 HOH A 3 603 603 HOH HOH . K 8 HOH A 4 604 604 HOH HOH . K 8 HOH A 5 605 605 HOH HOH . K 8 HOH A 6 606 606 HOH HOH . K 8 HOH A 7 607 607 HOH HOH . K 8 HOH A 8 608 608 HOH HOH . K 8 HOH A 9 609 609 HOH HOH . K 8 HOH A 10 610 610 HOH HOH . K 8 HOH A 11 611 611 HOH HOH . K 8 HOH A 12 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 L2P . . . E 5 53.606 32.313 53.531 1 97.68 ? C11 L2P 304 A 1 HETATM 2 C C12 L2P . . . E 5 52.272 32.23 52.75 1 99.58 ? C12 L2P 304 A 1 HETATM 3 C C13 L2P . . . E 5 51.785 30.744 52.474 1 99.38 ? C13 L2P 304 A 1 HETATM 4 C C14 L2P . . . E 5 51.686 29.935 53.776 1 101.26 ? C14 L2P 304 A 1 HETATM 5 C C15 L2P . . . E 5 52.733 30.008 51.524 1 98.28 ? C15 L2P 304 A 1 HETATM 6 C C16 L2P . . . E 5 52.25 30.14 50.032 1 96.55 ? C16 L2P 304 A 1 HETATM 7 C C17 L2P . . . E 5 51.906 28.748 49.424 1 92.13 ? C17 L2P 304 A 1 HETATM 8 C C18 L2P . . . E 5 51.443 28.921 47.97 1 90.59 ? C18 L2P 304 A 1 HETATM 9 C C19 L2P . . . E 5 49.891 29.039 47.898 1 92.68 ? C19 L2P 304 A 1 HETATM 10 C C20 L2P . . . E 5 51.925 27.684 47.081 1 88.99 ? C20 L2P 304 A 1 HETATM 11 C C21 L2P . . . E 5 52.355 28.167 45.645 1 88.14 ? C21 L2P 304 A 1 HETATM 12 C C22 L2P . . . E 5 51.525 27.408 44.549 1 87.35 ? C22 L2P 304 A 1 HETATM 13 C C23 L2P . . . E 5 51.536 28.179 43.174 1 86.01 ? C23 L2P 304 A 1 HETATM 14 C C24 L2P . . . E 5 50.152 28.147 42.601 1 84.97 ? C24 L2P 304 A 1 HETATM 15 C C25 L2P . . . E 5 52.512 27.509 42.167 1 86.35 ? C25 L2P 304 A 1 HETATM 16 C C26 L2P . . . E 5 53.42 28.537 41.53 1 86.7 ? C26 L2P 304 A 1 HETATM 17 C C27 L2P . . . E 5 54.407 27.829 40.502 1 84.57 ? C27 L2P 304 A 1 HETATM 18 C C28 L2P . . . E 5 55.33 28.875 39.854 1 84.94 ? C28 L2P 304 A 1 HETATM 19 C C29 L2P . . . E 5 56.768 28.808 40.502 1 84.27 ? C29 L2P 304 A 1 HETATM 20 C C30 L2P . . . E 5 55.463 28.626 38.28 1 86.11 ? C30 L2P 304 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #