data_4FBZ # _model_server_result.job_id eDay_hi0Q_M4etlcpp0qFQ _model_server_result.datetime_utc '2024-11-25 13:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 4FBZ # _exptl.entry_id 4FBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FBZ _cell.length_a 111.71 _cell.length_b 111.71 _cell.length_c 198.25 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.71 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.855 96.743698 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.345 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 199 n n C1 O1 BNG sing 200 n n C1 O5 BNG sing 201 n n C1 H1 BNG sing 202 n n C2 C3 BNG sing 203 n n C2 O2 BNG sing 204 n n C2 H2 BNG sing 205 n n C3 C4 BNG sing 206 n n C3 O3 BNG sing 207 n n C3 H3 BNG sing 208 n n C4 C5 BNG sing 209 n n C4 O4 BNG sing 210 n n C4 H4 BNG sing 211 n n C5 C6 BNG sing 212 n n C5 O5 BNG sing 213 n n C5 H5 BNG sing 214 n n C6 O6 BNG sing 215 n n C6 H61 BNG sing 216 n n C6 H62 BNG sing 217 n n C1' C2' BNG sing 218 n n C1' O1 BNG sing 219 n n C1' "H1'1" BNG sing 220 n n C1' "H1'2" BNG sing 221 n n C2' C3' BNG sing 222 n n C2' "H2'1" BNG sing 223 n n C2' "H2'2" BNG sing 224 n n C3' C4' BNG sing 225 n n C3' "H3'1" BNG sing 226 n n C3' "H3'2" BNG sing 227 n n C4' C5' BNG sing 228 n n C4' "H4'1" BNG sing 229 n n C4' "H4'2" BNG sing 230 n n C5' C6' BNG sing 231 n n C5' "H5'1" BNG sing 232 n n C5' "H5'2" BNG sing 233 n n C6' C7' BNG sing 234 n n C6' "H6'1" BNG sing 235 n n C6' "H6'2" BNG sing 236 n n C7' C8' BNG sing 237 n n C7' "H7'1" BNG sing 238 n n C7' "H7'2" BNG sing 239 n n C8' C9' BNG sing 240 n n C8' "H8'1" BNG sing 241 n n C8' "H8'2" BNG sing 242 n n C9' "H9'1" BNG sing 243 n n C9' "H9'2" BNG sing 244 n n C9' "H9'3" BNG sing 245 n n O2 HO2 BNG sing 246 n n O3 HO3 BNG sing 247 n n O4 HO4 BNG sing 248 n n O6 HO6 BNG sing 249 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4FBZ _atom_sites.fract_transf_matrix[1][1] 0.008952 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 22B A 1 302 370 22B 22B . D 4 SQL A 1 303 380 SQL SQU . E 5 L2P A 1 304 390 L2P LP3 . F 6 BNG A 1 305 400 BNG BNG . G 6 BNG A 1 306 410 BNG BNG . H 7 SO4 A 1 307 700 SO4 SO4 . I 7 SO4 A 1 308 701 SO4 SO4 . J 7 SO4 A 1 309 702 SO4 SO4 . K 8 HOH A 1 601 601 HOH HOH . K 8 HOH A 2 602 602 HOH HOH . K 8 HOH A 3 603 603 HOH HOH . K 8 HOH A 4 604 604 HOH HOH . K 8 HOH A 5 605 605 HOH HOH . K 8 HOH A 6 606 606 HOH HOH . K 8 HOH A 7 607 607 HOH HOH . K 8 HOH A 8 608 608 HOH HOH . K 8 HOH A 9 609 609 HOH HOH . K 8 HOH A 10 610 610 HOH HOH . K 8 HOH A 11 611 611 HOH HOH . K 8 HOH A 12 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . G 6 26.784 17.883 46.732 1 84.92 ? C1 BNG 306 A 1 HETATM 2 C C2 BNG . . . G 6 27.518 16.983 47.806 1 87.27 ? C2 BNG 306 A 1 HETATM 3 C C3 BNG . . . G 6 26.467 16.4 48.821 1 89.18 ? C3 BNG 306 A 1 HETATM 4 C C4 BNG . . . G 6 25.746 17.597 49.528 1 88.93 ? C4 BNG 306 A 1 HETATM 5 C C5 BNG . . . G 6 25.013 18.491 48.445 1 89.66 ? C5 BNG 306 A 1 HETATM 6 C C6 BNG . . . G 6 24.305 19.688 49.114 1 90.39 ? C6 BNG 306 A 1 HETATM 7 C C1' BNG . . . G 6 27.252 18.84 44.497 1 76.05 ? C1' BNG 306 A 1 HETATM 8 C C2' BNG . . . G 6 27.916 20.157 44.082 1 72.44 ? C2' BNG 306 A 1 HETATM 9 C C3' BNG . . . G 6 28.786 19.982 42.84 1 68.56 ? C3' BNG 306 A 1 HETATM 10 C C4' BNG . . . G 6 28.288 20.81 41.665 1 69.15 ? C4' BNG 306 A 1 HETATM 11 C C5' BNG . . . G 6 28.962 20.382 40.363 1 70.52 ? C5' BNG 306 A 1 HETATM 12 C C6' BNG . . . G 6 27.948 20.16 39.246 1 73.38 ? C6' BNG 306 A 1 HETATM 13 C C7' BNG . . . G 6 28.614 19.726 37.943 1 74.31 ? C7' BNG 306 A 1 HETATM 14 C C8' BNG . . . G 6 27.581 19.542 36.837 1 74.94 ? C8' BNG 306 A 1 HETATM 15 C C9' BNG . . . G 6 28.243 19.158 35.528 1 70.52 ? C9' BNG 306 A 1 HETATM 16 O O1 BNG . . . G 6 27.763 18.435 45.793 1 79.73 ? O1 BNG 306 A 1 HETATM 17 O O2 BNG . . . G 6 28.208 15.925 47.133 1 90.75 ? O2 BNG 306 A 1 HETATM 18 O O3 BNG . . . G 6 27.136 15.594 49.794 1 88.89 ? O3 BNG 306 A 1 HETATM 19 O O4 BNG . . . G 6 24.781 17.107 50.467 1 90.11 ? O4 BNG 306 A 1 HETATM 20 O O5 BNG . . . G 6 26.035 18.977 47.463 1 88.32 ? O5 BNG 306 A 1 HETATM 21 O O6 BNG . . . G 6 22.917 19.426 49.293 1 91.48 ? O6 BNG 306 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #