data_4FCW # _model_server_result.job_id uRNDAF5bj8N-GXUuj3Hm0A _model_server_result.datetime_utc '2024-10-11 02:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 4FCW # _exptl.entry_id 4FCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FCW _cell.length_a 129.238 _cell.length_b 129.238 _cell.length_c 122.972 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 542 1_555 A N LEU 2 A LEU 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C ALA 77 A ALA 618 1_555 A N MSE 78 A MSE 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 78 A MSE 619 1_555 A N ILE 79 A ILE 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ASP 82 A ASP 623 1_555 A N MSE 83 A MSE 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 83 A MSE 624 1_555 A N THR 84 A THR 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C TYR 86 A TYR 627 1_555 A N MSE 87 A MSE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 87 A MSE 628 1_555 A N GLU 88 A GLU 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C GLN 141 A GLN 682 1_555 A N MSE 142 A MSE 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C MSE 142 A MSE 683 1_555 A N LEU 143 A LEU 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C ILE 164 A ILE 705 1_555 A N MSE 165 A MSE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 165 A MSE 706 1_555 A N THR 166 A THR 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C GLN 228 A GLN 769 1_555 A N MSE 229 A MSE 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MSE 229 A MSE 770 1_555 A N SER 230 A SER 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 B C MSE 1 C MSE 542 1_555 B N LEU 2 C LEU 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C ALA 77 C ALA 618 1_555 B N MSE 78 C MSE 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 78 C MSE 619 1_555 B N ILE 79 C ILE 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C ASP 82 C ASP 623 1_555 B N MSE 83 C MSE 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 83 C MSE 624 1_555 B N THR 84 C THR 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale19 B C TYR 86 C TYR 627 1_555 B N MSE 87 C MSE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 87 C MSE 628 1_555 B N GLU 88 C GLU 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 B C GLN 141 C GLN 682 1_555 B N MSE 142 C MSE 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 142 C MSE 683 1_555 B N LEU 143 C LEU 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale23 B C ILE 164 C ILE 705 1_555 B N MSE 165 C MSE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 B C MSE 165 C MSE 706 1_555 B N THR 166 C THR 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 B C GLN 228 C GLN 769 1_555 B N MSE 229 C MSE 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C MSE 229 C MSE 770 1_555 B N SER 230 C SER 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale27 C C MSE 1 F MSE 542 1_555 C N LEU 2 F LEU 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale28 C C ALA 77 F ALA 618 1_555 C N MSE 78 F MSE 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C MSE 78 F MSE 619 1_555 C N ILE 79 F ILE 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 C C ASP 82 F ASP 623 1_555 C N MSE 83 F MSE 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale31 C C MSE 83 F MSE 624 1_555 C N THR 84 F THR 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale32 C C TYR 86 F TYR 627 1_555 C N MSE 87 F MSE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale33 C C MSE 87 F MSE 628 1_555 C N GLU 88 F GLU 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale34 C C GLN 141 F GLN 682 1_555 C N MSE 142 F MSE 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale35 C C MSE 142 F MSE 683 1_555 C N LEU 143 F LEU 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale36 C C ILE 164 F ILE 705 1_555 C N MSE 165 F MSE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale37 C C MSE 165 F MSE 706 1_555 C N THR 166 F THR 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale38 C C GLN 228 F GLN 769 1_555 C N MSE 229 F MSE 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale39 C C MSE 229 F MSE 770 1_555 C N SER 230 F SER 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FCW _atom_sites.fract_transf_matrix[1][1] 0.007738 _atom_sites.fract_transf_matrix[1][2] 0.004467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP A 1 901 853 ADP ADP . E 2 ADP C 1 901 853 ADP ADP . F 2 ADP F 1 901 853 ADP ADP . G 3 HOH A 1 1001 53 HOH HOH . G 3 HOH A 2 1002 56 HOH HOH . G 3 HOH A 3 1003 92 HOH HOH . G 3 HOH A 4 1004 146 HOH HOH . G 3 HOH A 5 1005 159 HOH HOH . G 3 HOH A 6 1006 170 HOH HOH . H 3 HOH C 1 1001 16 HOH HOH . H 3 HOH C 2 1002 61 HOH HOH . H 3 HOH C 3 1003 85 HOH HOH . H 3 HOH C 4 1004 116 HOH HOH . H 3 HOH C 5 1005 152 HOH HOH . I 3 HOH F 1 1001 1 HOH HOH . I 3 HOH F 2 1002 8 HOH HOH . I 3 HOH F 3 1003 12 HOH HOH . I 3 HOH F 4 1004 13 HOH HOH . I 3 HOH F 5 1005 20 HOH HOH . I 3 HOH F 6 1006 39 HOH HOH . I 3 HOH F 7 1007 40 HOH HOH . I 3 HOH F 8 1008 60 HOH HOH . I 3 HOH F 9 1009 68 HOH HOH . I 3 HOH F 10 1010 99 HOH HOH . I 3 HOH F 11 1011 106 HOH HOH . I 3 HOH F 12 1012 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 2 -55.134 11.002 45.407 1 50.23 ? PB ADP 901 A 1 HETATM 2 O O1B ADP . . . D 2 -53.634 11.104 45.341 1 53.04 ? O1B ADP 901 A 1 HETATM 3 O O2B ADP . . . D 2 -55.82 11.407 44.13 1 54 ? O2B ADP 901 A 1 HETATM 4 O O3B ADP . . . D 2 -55.755 11.566 46.659 1 59.96 ? O3B ADP 901 A 1 HETATM 5 P PA ADP . . . D 2 -54.631 8.466 46.517 1 42.3 ? PA ADP 901 A 1 HETATM 6 O O1A ADP . . . D 2 -53.241 8.289 45.965 1 45.85 ? O1A ADP 901 A 1 HETATM 7 O O2A ADP . . . D 2 -54.831 8.93 47.937 1 43 ? O2A ADP 901 A 1 HETATM 8 O O3A ADP . . . D 2 -55.44 9.432 45.523 1 47.11 ? O3A ADP 901 A 1 HETATM 9 O O5' ADP . . . D 2 -55.456 7.097 46.324 1 42.27 ? O5' ADP 901 A 1 HETATM 10 C C5' ADP . . . D 2 -56.707 6.921 46.995 1 37.71 ? C5' ADP 901 A 1 HETATM 11 C C4' ADP . . . D 2 -56.78 5.547 47.661 1 35.19 ? C4' ADP 901 A 1 HETATM 12 O O4' ADP . . . D 2 -56.655 4.516 46.674 1 35.26 ? O4' ADP 901 A 1 HETATM 13 C C3' ADP . . . D 2 -55.661 5.354 48.667 1 31.41 ? C3' ADP 901 A 1 HETATM 14 O O3' ADP . . . D 2 -56.189 4.885 49.902 1 45.41 ? O3' ADP 901 A 1 HETATM 15 C C2' ADP . . . D 2 -54.757 4.302 48.078 1 34.9 ? C2' ADP 901 A 1 HETATM 16 O O2' ADP . . . D 2 -54.479 3.289 49.045 1 54.04 ? O2' ADP 901 A 1 HETATM 17 C C1' ADP . . . D 2 -55.483 3.72 46.876 1 30.91 ? C1' ADP 901 A 1 HETATM 18 N N9 ADP . . . D 2 -54.633 3.8 45.659 1 30.14 ? N9 ADP 901 A 1 HETATM 19 C C8 ADP . . . D 2 -54.918 4.547 44.571 1 26.24 ? C8 ADP 901 A 1 HETATM 20 N N7 ADP . . . D 2 -53.964 4.423 43.618 1 26.12 ? N7 ADP 901 A 1 HETATM 21 C C5 ADP . . . D 2 -53.033 3.575 44.094 1 28.13 ? C5 ADP 901 A 1 HETATM 22 C C6 ADP . . . D 2 -51.761 3.007 43.595 1 26.26 ? C6 ADP 901 A 1 HETATM 23 N N6 ADP . . . D 2 -51.29 3.341 42.37 1 24.97 ? N6 ADP 901 A 1 HETATM 24 N N1 ADP . . . D 2 -51.089 2.151 44.404 1 34.17 ? N1 ADP 901 A 1 HETATM 25 C C2 ADP . . . D 2 -51.54 1.81 45.625 1 27.7 ? C2 ADP 901 A 1 HETATM 26 N N3 ADP . . . D 2 -52.695 2.292 46.137 1 38.81 ? N3 ADP 901 A 1 HETATM 27 C C4 ADP . . . D 2 -53.474 3.163 45.437 1 28.9 ? C4 ADP 901 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #