data_4FDJ # _model_server_result.job_id f1HvwoeVmhcVLNG_kfyTSA _model_server_result.datetime_utc '2024-11-27 06:16:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 4FDJ # _exptl.entry_id 4FDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.43 _cell.angle_gamma 90 _cell.entry_id 4FDJ _cell.length_a 60.706 _cell.length_b 155.835 _cell.length_c 61.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 282 A CYS 308 1_555 A SG CYS 393 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 463 A CYS 489 1_555 A SG CYS 492 A CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 475 A CYS 501 1_555 A SG CYS 481 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 282 B CYS 308 1_555 B SG CYS 393 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 B SG CYS 463 B CYS 489 1_555 B SG CYS 492 B CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 475 B CYS 501 1_555 B SG CYS 481 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C LEU 52 A LEU 78 1_555 A N DDZ 53 A DDZ 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C DDZ 53 A DDZ 79 1_555 A N SER 54 A SER 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A ND2 ASN 178 A ASN 204 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 397 A ASN 423 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 B C LEU 52 B LEU 78 1_555 B N DDZ 53 B DDZ 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 B C DDZ 53 B DDZ 79 1_555 B N SER 54 B SER 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B ND2 ASN 178 B ASN 204 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B ND2 ASN 397 B ASN 423 1_555 H C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OD1 ASP 13 A ASP 39 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A OD1 ASP 14 A ASP 40 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A OG1 DDZ 53 A DDZ 79 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A OD2 ASP 262 A ASP 288 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc5 A OD1 ASP 262 A ASP 288 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc6 A OD1 ASN 263 A ASN 289 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 B OD1 ASP 13 B ASP 39 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc8 B OD1 ASP 14 B ASP 40 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc9 B OG1 DDZ 53 B DDZ 79 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 B OD2 ASP 262 B ASP 288 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc11 B OD1 ASP 262 B ASP 288 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc12 B OD1 ASN 263 B ASN 289 1_555 I CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FDJ _atom_sites.fract_transf_matrix[1][1] 0.016473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007138 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 704 NAG NAG . D 2 NAG A 1 602 923 NAG NAG . E 3 CA A 1 603 1001 CA CA . F 4 NGA A 1 604 1000 NGA NGA . G 2 NAG B 1 601 704 NAG NAG . H 2 NAG B 1 602 923 NAG NAG . I 3 CA B 1 603 1001 CA CA . J 4 NGA B 1 604 1000 NGA NGA . K 5 HOH A 1 701 1 HOH HOH . K 5 HOH A 2 702 2 HOH HOH . K 5 HOH A 3 703 3 HOH HOH . K 5 HOH A 4 704 4 HOH HOH . K 5 HOH A 5 705 5 HOH HOH . K 5 HOH A 6 706 6 HOH HOH . K 5 HOH A 7 707 7 HOH HOH . K 5 HOH A 8 708 8 HOH HOH . K 5 HOH A 9 709 9 HOH HOH . K 5 HOH A 10 710 10 HOH HOH . K 5 HOH A 11 711 11 HOH HOH . K 5 HOH A 12 712 12 HOH HOH . K 5 HOH A 13 713 13 HOH HOH . K 5 HOH A 14 714 14 HOH HOH . K 5 HOH A 15 715 15 HOH HOH . K 5 HOH A 16 716 16 HOH HOH . K 5 HOH A 17 717 17 HOH HOH . K 5 HOH A 18 718 18 HOH HOH . K 5 HOH A 19 719 19 HOH HOH . K 5 HOH A 20 720 20 HOH HOH . K 5 HOH A 21 721 21 HOH HOH . K 5 HOH A 22 722 22 HOH HOH . K 5 HOH A 23 723 23 HOH HOH . K 5 HOH A 24 724 25 HOH HOH . K 5 HOH A 25 725 26 HOH HOH . K 5 HOH A 26 726 27 HOH HOH . K 5 HOH A 27 727 28 HOH HOH . K 5 HOH A 28 728 29 HOH HOH . K 5 HOH A 29 729 30 HOH HOH . K 5 HOH A 30 730 31 HOH HOH . K 5 HOH A 31 731 32 HOH HOH . K 5 HOH A 32 732 33 HOH HOH . K 5 HOH A 33 733 34 HOH HOH . K 5 HOH A 34 734 35 HOH HOH . K 5 HOH A 35 735 36 HOH HOH . K 5 HOH A 36 736 37 HOH HOH . K 5 HOH A 37 737 38 HOH HOH . K 5 HOH A 38 738 39 HOH HOH . K 5 HOH A 39 739 40 HOH HOH . K 5 HOH A 40 740 41 HOH HOH . K 5 HOH A 41 741 42 HOH HOH . K 5 HOH A 42 742 43 HOH HOH . K 5 HOH A 43 743 44 HOH HOH . K 5 HOH A 44 744 45 HOH HOH . K 5 HOH A 45 745 46 HOH HOH . K 5 HOH A 46 746 47 HOH HOH . K 5 HOH A 47 747 48 HOH HOH . K 5 HOH A 48 748 50 HOH HOH . K 5 HOH A 49 749 51 HOH HOH . K 5 HOH A 50 750 52 HOH HOH . K 5 HOH A 51 751 53 HOH HOH . K 5 HOH A 52 752 54 HOH HOH . K 5 HOH A 53 753 55 HOH HOH . K 5 HOH A 54 754 56 HOH HOH . K 5 HOH A 55 755 57 HOH HOH . K 5 HOH A 56 756 58 HOH HOH . K 5 HOH A 57 757 59 HOH HOH . K 5 HOH A 58 758 60 HOH HOH . K 5 HOH A 59 759 61 HOH HOH . K 5 HOH A 60 760 62 HOH HOH . K 5 HOH A 61 761 141 HOH HOH . K 5 HOH A 62 762 142 HOH HOH . K 5 HOH A 63 763 145 HOH HOH . K 5 HOH A 64 764 147 HOH HOH . K 5 HOH A 65 765 148 HOH HOH . K 5 HOH A 66 766 150 HOH HOH . K 5 HOH A 67 767 155 HOH HOH . K 5 HOH A 68 768 158 HOH HOH . K 5 HOH A 69 769 160 HOH HOH . K 5 HOH A 70 770 163 HOH HOH . K 5 HOH A 71 771 164 HOH HOH . K 5 HOH A 72 772 165 HOH HOH . K 5 HOH A 73 773 166 HOH HOH . K 5 HOH A 74 774 167 HOH HOH . K 5 HOH A 75 775 168 HOH HOH . K 5 HOH A 76 776 169 HOH HOH . K 5 HOH A 77 777 172 HOH HOH . K 5 HOH A 78 778 173 HOH HOH . K 5 HOH A 79 779 174 HOH HOH . K 5 HOH A 80 780 176 HOH HOH . K 5 HOH A 81 781 178 HOH HOH . K 5 HOH A 82 782 179 HOH HOH . K 5 HOH A 83 783 181 HOH HOH . K 5 HOH A 84 784 182 HOH HOH . K 5 HOH A 85 785 185 HOH HOH . K 5 HOH A 86 786 186 HOH HOH . K 5 HOH A 87 787 187 HOH HOH . K 5 HOH A 88 788 189 HOH HOH . K 5 HOH A 89 789 192 HOH HOH . K 5 HOH A 90 790 193 HOH HOH . K 5 HOH A 91 791 197 HOH HOH . K 5 HOH A 92 792 200 HOH HOH . K 5 HOH A 93 793 201 HOH HOH . K 5 HOH A 94 794 202 HOH HOH . K 5 HOH A 95 795 205 HOH HOH . L 5 HOH B 1 701 24 HOH HOH . L 5 HOH B 2 702 49 HOH HOH . L 5 HOH B 3 703 63 HOH HOH . L 5 HOH B 4 704 64 HOH HOH . L 5 HOH B 5 705 65 HOH HOH . L 5 HOH B 6 706 66 HOH HOH . L 5 HOH B 7 707 67 HOH HOH . L 5 HOH B 8 708 68 HOH HOH . L 5 HOH B 9 709 69 HOH HOH . L 5 HOH B 10 710 70 HOH HOH . L 5 HOH B 11 711 71 HOH HOH . L 5 HOH B 12 712 72 HOH HOH . L 5 HOH B 13 713 73 HOH HOH . L 5 HOH B 14 714 74 HOH HOH . L 5 HOH B 15 715 75 HOH HOH . L 5 HOH B 16 716 76 HOH HOH . L 5 HOH B 17 717 77 HOH HOH . L 5 HOH B 18 718 78 HOH HOH . L 5 HOH B 19 719 79 HOH HOH . L 5 HOH B 20 720 80 HOH HOH . L 5 HOH B 21 721 81 HOH HOH . L 5 HOH B 22 722 82 HOH HOH . L 5 HOH B 23 723 83 HOH HOH . L 5 HOH B 24 724 84 HOH HOH . L 5 HOH B 25 725 85 HOH HOH . L 5 HOH B 26 726 86 HOH HOH . L 5 HOH B 27 727 87 HOH HOH . L 5 HOH B 28 728 88 HOH HOH . L 5 HOH B 29 729 89 HOH HOH . L 5 HOH B 30 730 90 HOH HOH . L 5 HOH B 31 731 91 HOH HOH . L 5 HOH B 32 732 92 HOH HOH . L 5 HOH B 33 733 93 HOH HOH . L 5 HOH B 34 734 94 HOH HOH . L 5 HOH B 35 735 95 HOH HOH . L 5 HOH B 36 736 96 HOH HOH . L 5 HOH B 37 737 97 HOH HOH . L 5 HOH B 38 738 98 HOH HOH . L 5 HOH B 39 739 99 HOH HOH . L 5 HOH B 40 740 100 HOH HOH . L 5 HOH B 41 741 101 HOH HOH . L 5 HOH B 42 742 102 HOH HOH . L 5 HOH B 43 743 103 HOH HOH . L 5 HOH B 44 744 104 HOH HOH . L 5 HOH B 45 745 105 HOH HOH . L 5 HOH B 46 746 106 HOH HOH . L 5 HOH B 47 747 107 HOH HOH . L 5 HOH B 48 748 108 HOH HOH . L 5 HOH B 49 749 109 HOH HOH . L 5 HOH B 50 750 110 HOH HOH . L 5 HOH B 51 751 111 HOH HOH . L 5 HOH B 52 752 112 HOH HOH . L 5 HOH B 53 753 113 HOH HOH . L 5 HOH B 54 754 114 HOH HOH . L 5 HOH B 55 755 115 HOH HOH . L 5 HOH B 56 756 116 HOH HOH . L 5 HOH B 57 757 117 HOH HOH . L 5 HOH B 58 758 118 HOH HOH . L 5 HOH B 59 759 119 HOH HOH . L 5 HOH B 60 760 120 HOH HOH . L 5 HOH B 61 761 121 HOH HOH . L 5 HOH B 62 762 122 HOH HOH . L 5 HOH B 63 763 123 HOH HOH . L 5 HOH B 64 764 124 HOH HOH . L 5 HOH B 65 765 125 HOH HOH . L 5 HOH B 66 766 126 HOH HOH . L 5 HOH B 67 767 127 HOH HOH . L 5 HOH B 68 768 128 HOH HOH . L 5 HOH B 69 769 129 HOH HOH . L 5 HOH B 70 770 130 HOH HOH . L 5 HOH B 71 771 131 HOH HOH . L 5 HOH B 72 772 132 HOH HOH . L 5 HOH B 73 773 133 HOH HOH . L 5 HOH B 74 774 134 HOH HOH . L 5 HOH B 75 775 135 HOH HOH . L 5 HOH B 76 776 136 HOH HOH . L 5 HOH B 77 777 137 HOH HOH . L 5 HOH B 78 778 138 HOH HOH . L 5 HOH B 79 779 139 HOH HOH . L 5 HOH B 80 780 140 HOH HOH . L 5 HOH B 81 781 143 HOH HOH . L 5 HOH B 82 782 144 HOH HOH . L 5 HOH B 83 783 146 HOH HOH . L 5 HOH B 84 784 149 HOH HOH . L 5 HOH B 85 785 151 HOH HOH . L 5 HOH B 86 786 152 HOH HOH . L 5 HOH B 87 787 153 HOH HOH . L 5 HOH B 88 788 154 HOH HOH . L 5 HOH B 89 789 156 HOH HOH . L 5 HOH B 90 790 157 HOH HOH . L 5 HOH B 91 791 159 HOH HOH . L 5 HOH B 92 792 161 HOH HOH . L 5 HOH B 93 793 162 HOH HOH . L 5 HOH B 94 794 170 HOH HOH . L 5 HOH B 95 795 171 HOH HOH . L 5 HOH B 96 796 175 HOH HOH . L 5 HOH B 97 797 177 HOH HOH . L 5 HOH B 98 798 180 HOH HOH . L 5 HOH B 99 799 183 HOH HOH . L 5 HOH B 100 800 184 HOH HOH . L 5 HOH B 101 801 188 HOH HOH . L 5 HOH B 102 802 190 HOH HOH . L 5 HOH B 103 803 191 HOH HOH . L 5 HOH B 104 804 194 HOH HOH . L 5 HOH B 105 805 195 HOH HOH . L 5 HOH B 106 806 196 HOH HOH . L 5 HOH B 107 807 198 HOH HOH . L 5 HOH B 108 808 199 HOH HOH . L 5 HOH B 109 809 203 HOH HOH . L 5 HOH B 110 810 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.304 _atom_site.Cartn_y 36.099 _atom_site.Cartn_z 7.394 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #