data_4FDK # _model_server_result.job_id 6lewU_I-4FdmHHDdPmk_Ww _model_server_result.datetime_utc '2024-11-15 09:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4FDK # _exptl.entry_id 4FDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FDK _cell.length_a 80.552 _cell.length_b 127.426 _cell.length_c 42.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D O2 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 C FE HEM . A HEM 500 1_555 D O1 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc4 B NE2 HIS 102 B HIS 102 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc5 E FE HEM . B HEM 500 1_555 F O1 OXY . B OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 E FE HEM . B HEM 500 1_555 F O2 OXY . B OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 306 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 4FDK _atom_sites.fract_transf_matrix[1][1] 0.012414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 OXY A 1 501 501 OXY OXY . E 2 HEM B 1 500 500 HEM HEM . F 3 OXY B 1 501 501 OXY OXY . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 5 HOH HOH . G 4 HOH A 3 603 9 HOH HOH . G 4 HOH A 4 604 10 HOH HOH . G 4 HOH A 5 605 12 HOH HOH . G 4 HOH A 6 606 16 HOH HOH . G 4 HOH A 7 607 17 HOH HOH . G 4 HOH A 8 608 18 HOH HOH . G 4 HOH A 9 609 20 HOH HOH . G 4 HOH A 10 610 21 HOH HOH . G 4 HOH A 11 611 22 HOH HOH . G 4 HOH A 12 612 23 HOH HOH . G 4 HOH A 13 613 25 HOH HOH . G 4 HOH A 14 614 27 HOH HOH . G 4 HOH A 15 615 28 HOH HOH . G 4 HOH A 16 616 29 HOH HOH . G 4 HOH A 17 617 31 HOH HOH . G 4 HOH A 18 618 33 HOH HOH . G 4 HOH A 19 619 34 HOH HOH . G 4 HOH A 20 620 35 HOH HOH . G 4 HOH A 21 621 36 HOH HOH . G 4 HOH A 22 622 37 HOH HOH . G 4 HOH A 23 623 39 HOH HOH . G 4 HOH A 24 624 40 HOH HOH . G 4 HOH A 25 625 41 HOH HOH . G 4 HOH A 26 626 42 HOH HOH . G 4 HOH A 27 627 43 HOH HOH . G 4 HOH A 28 628 48 HOH HOH . G 4 HOH A 29 629 52 HOH HOH . G 4 HOH A 30 630 54 HOH HOH . G 4 HOH A 31 631 56 HOH HOH . G 4 HOH A 32 632 57 HOH HOH . G 4 HOH A 33 633 59 HOH HOH . G 4 HOH A 34 634 60 HOH HOH . G 4 HOH A 35 635 61 HOH HOH . G 4 HOH A 36 636 63 HOH HOH . G 4 HOH A 37 637 65 HOH HOH . G 4 HOH A 38 638 66 HOH HOH . G 4 HOH A 39 639 70 HOH HOH . G 4 HOH A 40 640 72 HOH HOH . G 4 HOH A 41 641 75 HOH HOH . G 4 HOH A 42 642 76 HOH HOH . G 4 HOH A 43 643 78 HOH HOH . G 4 HOH A 44 644 80 HOH HOH . G 4 HOH A 45 645 81 HOH HOH . G 4 HOH A 46 646 82 HOH HOH . G 4 HOH A 47 647 83 HOH HOH . G 4 HOH A 48 648 85 HOH HOH . G 4 HOH A 49 649 86 HOH HOH . G 4 HOH A 50 650 87 HOH HOH . G 4 HOH A 51 651 88 HOH HOH . G 4 HOH A 52 652 89 HOH HOH . G 4 HOH A 53 653 90 HOH HOH . G 4 HOH A 54 654 93 HOH HOH . G 4 HOH A 55 655 94 HOH HOH . G 4 HOH A 56 656 95 HOH HOH . G 4 HOH A 57 657 96 HOH HOH . G 4 HOH A 58 658 102 HOH HOH . G 4 HOH A 59 659 103 HOH HOH . G 4 HOH A 60 660 104 HOH HOH . G 4 HOH A 61 661 105 HOH HOH . G 4 HOH A 62 662 108 HOH HOH . G 4 HOH A 63 663 109 HOH HOH . G 4 HOH A 64 664 113 HOH HOH . G 4 HOH A 65 665 114 HOH HOH . G 4 HOH A 66 666 117 HOH HOH . G 4 HOH A 67 667 118 HOH HOH . G 4 HOH A 68 668 119 HOH HOH . G 4 HOH A 69 669 120 HOH HOH . G 4 HOH A 70 670 122 HOH HOH . G 4 HOH A 71 671 124 HOH HOH . G 4 HOH A 72 672 125 HOH HOH . G 4 HOH A 73 673 126 HOH HOH . G 4 HOH A 74 674 130 HOH HOH . G 4 HOH A 75 675 131 HOH HOH . G 4 HOH A 76 676 135 HOH HOH . G 4 HOH A 77 677 138 HOH HOH . G 4 HOH A 78 678 139 HOH HOH . G 4 HOH A 79 679 142 HOH HOH . G 4 HOH A 80 680 143 HOH HOH . G 4 HOH A 81 681 146 HOH HOH . G 4 HOH A 82 682 147 HOH HOH . G 4 HOH A 83 683 148 HOH HOH . G 4 HOH A 84 684 150 HOH HOH . G 4 HOH A 85 685 155 HOH HOH . G 4 HOH A 86 686 158 HOH HOH . G 4 HOH A 87 687 162 HOH HOH . G 4 HOH A 88 688 164 HOH HOH . G 4 HOH A 89 689 169 HOH HOH . G 4 HOH A 90 690 172 HOH HOH . G 4 HOH A 91 691 174 HOH HOH . G 4 HOH A 92 692 175 HOH HOH . G 4 HOH A 93 693 180 HOH HOH . G 4 HOH A 94 694 183 HOH HOH . G 4 HOH A 95 695 184 HOH HOH . G 4 HOH A 96 696 193 HOH HOH . G 4 HOH A 97 697 194 HOH HOH . G 4 HOH A 98 698 195 HOH HOH . G 4 HOH A 99 699 196 HOH HOH . G 4 HOH A 100 700 197 HOH HOH . G 4 HOH A 101 701 198 HOH HOH . G 4 HOH A 102 702 202 HOH HOH . G 4 HOH A 103 703 204 HOH HOH . G 4 HOH A 104 704 205 HOH HOH . G 4 HOH A 105 705 206 HOH HOH . G 4 HOH A 106 706 207 HOH HOH . G 4 HOH A 107 707 208 HOH HOH . G 4 HOH A 108 708 209 HOH HOH . G 4 HOH A 109 709 210 HOH HOH . G 4 HOH A 110 710 211 HOH HOH . G 4 HOH A 111 711 212 HOH HOH . G 4 HOH A 112 712 213 HOH HOH . G 4 HOH A 113 713 214 HOH HOH . G 4 HOH A 114 714 215 HOH HOH . G 4 HOH A 115 715 216 HOH HOH . G 4 HOH A 116 716 217 HOH HOH . G 4 HOH A 117 717 218 HOH HOH . G 4 HOH A 118 718 219 HOH HOH . G 4 HOH A 119 719 220 HOH HOH . G 4 HOH A 120 720 221 HOH HOH . G 4 HOH A 121 721 222 HOH HOH . G 4 HOH A 122 722 223 HOH HOH . G 4 HOH A 123 723 224 HOH HOH . G 4 HOH A 124 724 226 HOH HOH . G 4 HOH A 125 725 227 HOH HOH . G 4 HOH A 126 726 228 HOH HOH . G 4 HOH A 127 727 229 HOH HOH . G 4 HOH A 128 728 230 HOH HOH . G 4 HOH A 129 729 231 HOH HOH . G 4 HOH A 130 730 232 HOH HOH . G 4 HOH A 131 731 233 HOH HOH . G 4 HOH A 132 732 234 HOH HOH . G 4 HOH A 133 733 235 HOH HOH . G 4 HOH A 134 734 236 HOH HOH . G 4 HOH A 135 735 237 HOH HOH . G 4 HOH A 136 736 238 HOH HOH . G 4 HOH A 137 737 239 HOH HOH . G 4 HOH A 138 738 240 HOH HOH . G 4 HOH A 139 739 241 HOH HOH . G 4 HOH A 140 740 242 HOH HOH . G 4 HOH A 141 741 243 HOH HOH . G 4 HOH A 142 742 244 HOH HOH . G 4 HOH A 143 743 245 HOH HOH . G 4 HOH A 144 744 246 HOH HOH . G 4 HOH A 145 745 247 HOH HOH . G 4 HOH A 146 746 248 HOH HOH . G 4 HOH A 147 747 279 HOH HOH . H 4 HOH B 1 601 203 HOH HOH . H 4 HOH B 2 602 2 HOH HOH . H 4 HOH B 3 603 3 HOH HOH . H 4 HOH B 4 604 4 HOH HOH . H 4 HOH B 5 605 6 HOH HOH . H 4 HOH B 6 606 7 HOH HOH . H 4 HOH B 7 607 8 HOH HOH . H 4 HOH B 8 608 11 HOH HOH . H 4 HOH B 9 609 13 HOH HOH . H 4 HOH B 10 610 14 HOH HOH . H 4 HOH B 11 611 15 HOH HOH . H 4 HOH B 12 612 19 HOH HOH . H 4 HOH B 13 613 24 HOH HOH . H 4 HOH B 14 614 26 HOH HOH . H 4 HOH B 15 615 30 HOH HOH . H 4 HOH B 16 616 32 HOH HOH . H 4 HOH B 17 617 38 HOH HOH . H 4 HOH B 18 618 44 HOH HOH . H 4 HOH B 19 619 45 HOH HOH . H 4 HOH B 20 620 46 HOH HOH . H 4 HOH B 21 621 47 HOH HOH . H 4 HOH B 22 622 49 HOH HOH . H 4 HOH B 23 623 50 HOH HOH . H 4 HOH B 24 624 51 HOH HOH . H 4 HOH B 25 625 53 HOH HOH . H 4 HOH B 26 626 55 HOH HOH . H 4 HOH B 27 627 58 HOH HOH . H 4 HOH B 28 628 62 HOH HOH . H 4 HOH B 29 629 64 HOH HOH . H 4 HOH B 30 630 67 HOH HOH . H 4 HOH B 31 631 68 HOH HOH . H 4 HOH B 32 632 69 HOH HOH . H 4 HOH B 33 633 71 HOH HOH . H 4 HOH B 34 634 73 HOH HOH . H 4 HOH B 35 635 74 HOH HOH . H 4 HOH B 36 636 77 HOH HOH . H 4 HOH B 37 637 79 HOH HOH . H 4 HOH B 38 638 84 HOH HOH . H 4 HOH B 39 639 91 HOH HOH . H 4 HOH B 40 640 92 HOH HOH . H 4 HOH B 41 641 97 HOH HOH . H 4 HOH B 42 642 98 HOH HOH . H 4 HOH B 43 643 99 HOH HOH . H 4 HOH B 44 644 100 HOH HOH . H 4 HOH B 45 645 101 HOH HOH . H 4 HOH B 46 646 106 HOH HOH . H 4 HOH B 47 647 107 HOH HOH . H 4 HOH B 48 648 110 HOH HOH . H 4 HOH B 49 649 111 HOH HOH . H 4 HOH B 50 650 112 HOH HOH . H 4 HOH B 51 651 115 HOH HOH . H 4 HOH B 52 652 116 HOH HOH . H 4 HOH B 53 653 121 HOH HOH . H 4 HOH B 54 654 123 HOH HOH . H 4 HOH B 55 655 127 HOH HOH . H 4 HOH B 56 656 128 HOH HOH . H 4 HOH B 57 657 129 HOH HOH . H 4 HOH B 58 658 132 HOH HOH . H 4 HOH B 59 659 133 HOH HOH . H 4 HOH B 60 660 134 HOH HOH . H 4 HOH B 61 661 136 HOH HOH . H 4 HOH B 62 662 137 HOH HOH . H 4 HOH B 63 663 140 HOH HOH . H 4 HOH B 64 664 141 HOH HOH . H 4 HOH B 65 665 144 HOH HOH . H 4 HOH B 66 666 145 HOH HOH . H 4 HOH B 67 667 149 HOH HOH . H 4 HOH B 68 668 151 HOH HOH . H 4 HOH B 69 669 152 HOH HOH . H 4 HOH B 70 670 153 HOH HOH . H 4 HOH B 71 671 154 HOH HOH . H 4 HOH B 72 672 156 HOH HOH . H 4 HOH B 73 673 157 HOH HOH . H 4 HOH B 74 674 159 HOH HOH . H 4 HOH B 75 675 160 HOH HOH . H 4 HOH B 76 676 161 HOH HOH . H 4 HOH B 77 677 163 HOH HOH . H 4 HOH B 78 678 165 HOH HOH . H 4 HOH B 79 679 166 HOH HOH . H 4 HOH B 80 680 167 HOH HOH . H 4 HOH B 81 681 168 HOH HOH . H 4 HOH B 82 682 170 HOH HOH . H 4 HOH B 83 683 171 HOH HOH . H 4 HOH B 84 684 173 HOH HOH . H 4 HOH B 85 685 176 HOH HOH . H 4 HOH B 86 686 177 HOH HOH . H 4 HOH B 87 687 178 HOH HOH . H 4 HOH B 88 688 179 HOH HOH . H 4 HOH B 89 689 181 HOH HOH . H 4 HOH B 90 690 182 HOH HOH . H 4 HOH B 91 691 185 HOH HOH . H 4 HOH B 92 692 186 HOH HOH . H 4 HOH B 93 693 187 HOH HOH . H 4 HOH B 94 694 188 HOH HOH . H 4 HOH B 95 695 189 HOH HOH . H 4 HOH B 96 696 190 HOH HOH . H 4 HOH B 97 697 191 HOH HOH . H 4 HOH B 98 698 192 HOH HOH . H 4 HOH B 99 699 199 HOH HOH . H 4 HOH B 100 700 200 HOH HOH . H 4 HOH B 101 701 201 HOH HOH . H 4 HOH B 102 702 225 HOH HOH . H 4 HOH B 103 703 249 HOH HOH . H 4 HOH B 104 704 250 HOH HOH . H 4 HOH B 105 705 251 HOH HOH . H 4 HOH B 106 706 252 HOH HOH . H 4 HOH B 107 707 253 HOH HOH . H 4 HOH B 108 708 254 HOH HOH . H 4 HOH B 109 709 255 HOH HOH . H 4 HOH B 110 710 256 HOH HOH . H 4 HOH B 111 711 257 HOH HOH . H 4 HOH B 112 712 258 HOH HOH . H 4 HOH B 113 713 259 HOH HOH . H 4 HOH B 114 714 260 HOH HOH . H 4 HOH B 115 715 261 HOH HOH . H 4 HOH B 116 716 262 HOH HOH . H 4 HOH B 117 717 263 HOH HOH . H 4 HOH B 118 718 264 HOH HOH . H 4 HOH B 119 719 265 HOH HOH . H 4 HOH B 120 720 266 HOH HOH . H 4 HOH B 121 721 267 HOH HOH . H 4 HOH B 122 722 268 HOH HOH . H 4 HOH B 123 723 269 HOH HOH . H 4 HOH B 124 724 270 HOH HOH . H 4 HOH B 125 725 271 HOH HOH . H 4 HOH B 126 726 272 HOH HOH . H 4 HOH B 127 727 273 HOH HOH . H 4 HOH B 128 728 274 HOH HOH . H 4 HOH B 129 729 275 HOH HOH . H 4 HOH B 130 730 276 HOH HOH . H 4 HOH B 131 731 277 HOH HOH . H 4 HOH B 132 732 278 HOH HOH . H 4 HOH B 133 733 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . F 3 20.615 45.196 24.141 1 28.41 ? O1 OXY 501 B 1 HETATM 2 O O2 OXY . . . F 3 20.648 44.882 25.293 1 39.38 ? O2 OXY 501 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #