data_4FDP # _model_server_result.job_id lHCu3yKQdKmX1CoFY266qw _model_server_result.datetime_utc '2024-12-02 05:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4FDP # _exptl.entry_id 4FDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.91 _cell.angle_gamma 90 _cell.entry_id 4FDP _cell.length_a 77.97 _cell.length_b 83.62 _cell.length_c 81.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 264 n y N1 C5 IMD sing 265 n y N1 HN1 IMD sing 266 n n C2 N3 IMD doub 267 n y C2 H2 IMD sing 268 n n N3 C4 IMD sing 269 n y N3 HN3 IMD sing 270 n n C4 C5 IMD doub 271 n y C4 H4 IMD sing 272 n n C5 H5 IMD sing 273 n n # _atom_sites.entry_id 4FDP _atom_sites.fract_transf_matrix[1][1] 0.012825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003176 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 900 FAD FAD . D 3 IMD A 1 502 1 IMD IMD . E 2 FAD B 1 900 900 FAD FAD . F 4 HOH A 1 601 1 HOH HOH . F 4 HOH A 2 602 2 HOH HOH . F 4 HOH A 3 603 3 HOH HOH . F 4 HOH A 4 604 6 HOH HOH . F 4 HOH A 5 605 7 HOH HOH . F 4 HOH A 6 606 9 HOH HOH . F 4 HOH A 7 607 12 HOH HOH . F 4 HOH A 8 608 13 HOH HOH . F 4 HOH A 9 609 15 HOH HOH . F 4 HOH A 10 610 16 HOH HOH . F 4 HOH A 11 611 17 HOH HOH . F 4 HOH A 12 612 18 HOH HOH . F 4 HOH A 13 613 19 HOH HOH . F 4 HOH A 14 614 20 HOH HOH . F 4 HOH A 15 615 22 HOH HOH . F 4 HOH A 16 616 23 HOH HOH . F 4 HOH A 17 617 24 HOH HOH . F 4 HOH A 18 618 25 HOH HOH . F 4 HOH A 19 619 27 HOH HOH . F 4 HOH A 20 620 28 HOH HOH . F 4 HOH A 21 621 29 HOH HOH . F 4 HOH A 22 622 31 HOH HOH . F 4 HOH A 23 623 33 HOH HOH . F 4 HOH A 24 624 34 HOH HOH . F 4 HOH A 25 625 36 HOH HOH . F 4 HOH A 26 626 37 HOH HOH . F 4 HOH A 27 627 39 HOH HOH . F 4 HOH A 28 628 40 HOH HOH . F 4 HOH A 29 629 41 HOH HOH . F 4 HOH A 30 630 44 HOH HOH . F 4 HOH A 31 631 46 HOH HOH . F 4 HOH A 32 632 47 HOH HOH . F 4 HOH A 33 633 48 HOH HOH . F 4 HOH A 34 634 52 HOH HOH . F 4 HOH A 35 635 53 HOH HOH . F 4 HOH A 36 636 54 HOH HOH . F 4 HOH A 37 637 55 HOH HOH . F 4 HOH A 38 638 56 HOH HOH . F 4 HOH A 39 639 57 HOH HOH . F 4 HOH A 40 640 59 HOH HOH . F 4 HOH A 41 641 62 HOH HOH . F 4 HOH A 42 642 64 HOH HOH . F 4 HOH A 43 643 68 HOH HOH . F 4 HOH A 44 644 71 HOH HOH . F 4 HOH A 45 645 72 HOH HOH . F 4 HOH A 46 646 74 HOH HOH . F 4 HOH A 47 647 75 HOH HOH . F 4 HOH A 48 648 76 HOH HOH . F 4 HOH A 49 649 78 HOH HOH . F 4 HOH A 50 650 79 HOH HOH . F 4 HOH A 51 651 81 HOH HOH . F 4 HOH A 52 652 84 HOH HOH . F 4 HOH A 53 653 85 HOH HOH . F 4 HOH A 54 654 86 HOH HOH . F 4 HOH A 55 655 88 HOH HOH . F 4 HOH A 56 656 89 HOH HOH . F 4 HOH A 57 657 90 HOH HOH . F 4 HOH A 58 658 91 HOH HOH . F 4 HOH A 59 659 92 HOH HOH . F 4 HOH A 60 660 93 HOH HOH . F 4 HOH A 61 661 94 HOH HOH . F 4 HOH A 62 662 95 HOH HOH . F 4 HOH A 63 663 98 HOH HOH . F 4 HOH A 64 664 99 HOH HOH . F 4 HOH A 65 665 100 HOH HOH . F 4 HOH A 66 666 101 HOH HOH . F 4 HOH A 67 667 102 HOH HOH . F 4 HOH A 68 668 104 HOH HOH . F 4 HOH A 69 669 105 HOH HOH . F 4 HOH A 70 670 106 HOH HOH . F 4 HOH A 71 671 107 HOH HOH . F 4 HOH A 72 672 108 HOH HOH . F 4 HOH A 73 673 110 HOH HOH . F 4 HOH A 74 674 112 HOH HOH . F 4 HOH A 75 675 115 HOH HOH . F 4 HOH A 76 676 119 HOH HOH . F 4 HOH A 77 677 120 HOH HOH . F 4 HOH A 78 678 123 HOH HOH . F 4 HOH A 79 679 124 HOH HOH . F 4 HOH A 80 680 125 HOH HOH . F 4 HOH A 81 681 127 HOH HOH . F 4 HOH A 82 682 128 HOH HOH . F 4 HOH A 83 683 129 HOH HOH . F 4 HOH A 84 684 130 HOH HOH . F 4 HOH A 85 685 131 HOH HOH . F 4 HOH A 86 686 132 HOH HOH . F 4 HOH A 87 687 134 HOH HOH . F 4 HOH A 88 688 135 HOH HOH . F 4 HOH A 89 689 136 HOH HOH . F 4 HOH A 90 690 137 HOH HOH . F 4 HOH A 91 691 138 HOH HOH . F 4 HOH A 92 692 139 HOH HOH . F 4 HOH A 93 693 143 HOH HOH . F 4 HOH A 94 694 144 HOH HOH . F 4 HOH A 95 695 148 HOH HOH . F 4 HOH A 96 696 149 HOH HOH . F 4 HOH A 97 697 152 HOH HOH . F 4 HOH A 98 698 153 HOH HOH . F 4 HOH A 99 699 155 HOH HOH . F 4 HOH A 100 700 158 HOH HOH . F 4 HOH A 101 701 160 HOH HOH . F 4 HOH A 102 702 161 HOH HOH . F 4 HOH A 103 703 162 HOH HOH . F 4 HOH A 104 704 163 HOH HOH . F 4 HOH A 105 705 164 HOH HOH . F 4 HOH A 106 706 165 HOH HOH . F 4 HOH A 107 707 166 HOH HOH . F 4 HOH A 108 708 168 HOH HOH . F 4 HOH A 109 709 170 HOH HOH . F 4 HOH A 110 710 172 HOH HOH . F 4 HOH A 111 711 173 HOH HOH . F 4 HOH A 112 712 176 HOH HOH . F 4 HOH A 113 713 178 HOH HOH . F 4 HOH A 114 714 180 HOH HOH . F 4 HOH A 115 715 182 HOH HOH . F 4 HOH A 116 716 183 HOH HOH . F 4 HOH A 117 717 187 HOH HOH . F 4 HOH A 118 718 188 HOH HOH . F 4 HOH A 119 719 189 HOH HOH . F 4 HOH A 120 720 190 HOH HOH . F 4 HOH A 121 721 192 HOH HOH . F 4 HOH A 122 722 193 HOH HOH . F 4 HOH A 123 723 195 HOH HOH . F 4 HOH A 124 724 198 HOH HOH . F 4 HOH A 125 725 200 HOH HOH . F 4 HOH A 126 726 201 HOH HOH . F 4 HOH A 127 727 203 HOH HOH . F 4 HOH A 128 728 204 HOH HOH . F 4 HOH A 129 729 205 HOH HOH . F 4 HOH A 130 730 207 HOH HOH . F 4 HOH A 131 731 209 HOH HOH . F 4 HOH A 132 732 212 HOH HOH . F 4 HOH A 133 733 214 HOH HOH . F 4 HOH A 134 734 215 HOH HOH . G 4 HOH B 1 1001 4 HOH HOH . G 4 HOH B 2 1002 5 HOH HOH . G 4 HOH B 3 1003 8 HOH HOH . G 4 HOH B 4 1004 10 HOH HOH . G 4 HOH B 5 1005 11 HOH HOH . G 4 HOH B 6 1006 14 HOH HOH . G 4 HOH B 7 1007 21 HOH HOH . G 4 HOH B 8 1008 26 HOH HOH . G 4 HOH B 9 1009 30 HOH HOH . G 4 HOH B 10 1010 32 HOH HOH . G 4 HOH B 11 1011 35 HOH HOH . G 4 HOH B 12 1012 38 HOH HOH . G 4 HOH B 13 1013 42 HOH HOH . G 4 HOH B 14 1014 43 HOH HOH . G 4 HOH B 15 1015 45 HOH HOH . G 4 HOH B 16 1016 49 HOH HOH . G 4 HOH B 17 1017 50 HOH HOH . G 4 HOH B 18 1018 51 HOH HOH . G 4 HOH B 19 1019 58 HOH HOH . G 4 HOH B 20 1020 60 HOH HOH . G 4 HOH B 21 1021 61 HOH HOH . G 4 HOH B 22 1022 63 HOH HOH . G 4 HOH B 23 1023 65 HOH HOH . G 4 HOH B 24 1024 66 HOH HOH . G 4 HOH B 25 1025 67 HOH HOH . G 4 HOH B 26 1026 69 HOH HOH . G 4 HOH B 27 1027 70 HOH HOH . G 4 HOH B 28 1028 73 HOH HOH . G 4 HOH B 29 1029 77 HOH HOH . G 4 HOH B 30 1030 80 HOH HOH . G 4 HOH B 31 1031 82 HOH HOH . G 4 HOH B 32 1032 83 HOH HOH . G 4 HOH B 33 1033 87 HOH HOH . G 4 HOH B 34 1034 96 HOH HOH . G 4 HOH B 35 1035 97 HOH HOH . G 4 HOH B 36 1036 103 HOH HOH . G 4 HOH B 37 1037 109 HOH HOH . G 4 HOH B 38 1038 111 HOH HOH . G 4 HOH B 39 1039 113 HOH HOH . G 4 HOH B 40 1040 114 HOH HOH . G 4 HOH B 41 1041 116 HOH HOH . G 4 HOH B 42 1042 117 HOH HOH . G 4 HOH B 43 1043 118 HOH HOH . G 4 HOH B 44 1044 121 HOH HOH . G 4 HOH B 45 1045 122 HOH HOH . G 4 HOH B 46 1046 126 HOH HOH . G 4 HOH B 47 1047 133 HOH HOH . G 4 HOH B 48 1048 140 HOH HOH . G 4 HOH B 49 1049 141 HOH HOH . G 4 HOH B 50 1050 142 HOH HOH . G 4 HOH B 51 1051 145 HOH HOH . G 4 HOH B 52 1052 146 HOH HOH . G 4 HOH B 53 1053 147 HOH HOH . G 4 HOH B 54 1054 150 HOH HOH . G 4 HOH B 55 1055 151 HOH HOH . G 4 HOH B 56 1056 154 HOH HOH . G 4 HOH B 57 1057 156 HOH HOH . G 4 HOH B 58 1058 157 HOH HOH . G 4 HOH B 59 1059 159 HOH HOH . G 4 HOH B 60 1060 167 HOH HOH . G 4 HOH B 61 1061 169 HOH HOH . G 4 HOH B 62 1062 171 HOH HOH . G 4 HOH B 63 1063 174 HOH HOH . G 4 HOH B 64 1064 175 HOH HOH . G 4 HOH B 65 1065 177 HOH HOH . G 4 HOH B 66 1066 179 HOH HOH . G 4 HOH B 67 1067 181 HOH HOH . G 4 HOH B 68 1068 184 HOH HOH . G 4 HOH B 69 1069 185 HOH HOH . G 4 HOH B 70 1070 186 HOH HOH . G 4 HOH B 71 1071 191 HOH HOH . G 4 HOH B 72 1072 194 HOH HOH . G 4 HOH B 73 1073 196 HOH HOH . G 4 HOH B 74 1074 197 HOH HOH . G 4 HOH B 75 1075 199 HOH HOH . G 4 HOH B 76 1076 202 HOH HOH . G 4 HOH B 77 1077 206 HOH HOH . G 4 HOH B 78 1078 208 HOH HOH . G 4 HOH B 79 1079 210 HOH HOH . G 4 HOH B 80 1080 211 HOH HOH . G 4 HOH B 81 1081 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 3 31.755 -2.076 25.707 1 48.85 ? N1 IMD 502 A 1 HETATM 2 C C2 IMD . . . D 3 33.107 -2.101 25.564 1 50.78 ? C2 IMD 502 A 1 HETATM 3 N N3 IMD . . . D 3 33.433 -1.512 24.391 1 51.59 ? N3 IMD 502 A 1 HETATM 4 C C4 IMD . . . D 3 32.289 -1.101 23.796 1 46.13 ? C4 IMD 502 A 1 HETATM 5 C C5 IMD . . . D 3 31.23 -1.461 24.624 1 48.08 ? C5 IMD 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 494 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #