data_4FDU # _model_server_result.job_id JdG25bhnFQWY8xDJOG6t8A _model_server_result.datetime_utc '2025-07-03 02:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4FDU # _exptl.entry_id 4FDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.535 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-HEXASULPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.46 _cell.angle_gamma 90 _cell.entry_id 4FDU _cell.length_a 52.16 _cell.length_b 117.3 _cell.length_c 75.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C6 H12 O24 S6' _chem_comp.formula_weight 660.535 _chem_comp.id IHS _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-HEXASULPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 IHS sing 161 n n C6 C1 IHS sing 162 n n C1 O1 IHS sing 163 n n C1 H1 IHS sing 164 n n O1 S1 IHS sing 165 n n O3 S1 IHS doub 166 n n O4 S1 IHS doub 167 n n S1 O2 IHS sing 168 n n C3 C2 IHS sing 169 n n C2 O12 IHS sing 170 n n C2 H2 IHS sing 171 n n O2 HO2 IHS sing 172 n n O22 S2 IHS doub 173 n n O12 S2 IHS sing 174 n n S2 O42 IHS doub 175 n n S2 O32 IHS sing 176 n n C4 C3 IHS sing 177 n n C3 O13 IHS sing 178 n n C3 H3 IHS sing 179 n n O43 S3 IHS doub 180 n n O23 S3 IHS doub 181 n n S3 O33 IHS sing 182 n n S3 O13 IHS sing 183 n n O14 C4 IHS sing 184 n n C4 C5 IHS sing 185 n n C4 H4 IHS sing 186 n n O34 S4 IHS doub 187 n n O24 S4 IHS doub 188 n n S4 O44 IHS sing 189 n n S4 O14 IHS sing 190 n n O15 C5 IHS sing 191 n n C5 C6 IHS sing 192 n n C5 H5 IHS sing 193 n n O45 S5 IHS doub 194 n n O25 S5 IHS doub 195 n n S5 O35 IHS sing 196 n n S5 O15 IHS sing 197 n n O16 C6 IHS sing 198 n n C6 H6 IHS sing 199 n n O16 S6 IHS sing 200 n n O36 S6 IHS doub 201 n n S6 O26 IHS doub 202 n n S6 O46 IHS sing 203 n n O32 HO32 IHS sing 204 n n O33 HO33 IHS sing 205 n n O35 HO35 IHS sing 206 n n O44 HO44 IHS sing 207 n n O46 HO46 IHS sing 208 n n # _atom_sites.entry_id 4FDU _atom_sites.fract_transf_matrix[1][1] 0.019172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHS A 1 501 500 IHS IHS . D 3 EDO A 1 502 3 EDO EDO . E 2 IHS B 1 501 500 IHS IHS . F 3 EDO B 1 502 1 EDO EDO . G 3 EDO B 1 503 2 EDO EDO . H 4 HOH A 1 601 2 HOH HOH . H 4 HOH A 2 602 4 HOH HOH . H 4 HOH A 3 603 5 HOH HOH . H 4 HOH A 4 604 6 HOH HOH . H 4 HOH A 5 605 7 HOH HOH . H 4 HOH A 6 606 9 HOH HOH . H 4 HOH A 7 607 14 HOH HOH . H 4 HOH A 8 608 19 HOH HOH . H 4 HOH A 9 609 20 HOH HOH . H 4 HOH A 10 610 21 HOH HOH . H 4 HOH A 11 611 22 HOH HOH . H 4 HOH A 12 612 23 HOH HOH . H 4 HOH A 13 613 24 HOH HOH . H 4 HOH A 14 614 25 HOH HOH . H 4 HOH A 15 615 26 HOH HOH . H 4 HOH A 16 616 27 HOH HOH . H 4 HOH A 17 617 30 HOH HOH . H 4 HOH A 18 618 31 HOH HOH . H 4 HOH A 19 619 35 HOH HOH . H 4 HOH A 20 620 37 HOH HOH . H 4 HOH A 21 621 39 HOH HOH . H 4 HOH A 22 622 40 HOH HOH . H 4 HOH A 23 623 41 HOH HOH . H 4 HOH A 24 624 43 HOH HOH . H 4 HOH A 25 625 46 HOH HOH . H 4 HOH A 26 626 49 HOH HOH . H 4 HOH A 27 627 51 HOH HOH . H 4 HOH A 28 628 53 HOH HOH . H 4 HOH A 29 629 55 HOH HOH . H 4 HOH A 30 630 56 HOH HOH . H 4 HOH A 31 631 60 HOH HOH . H 4 HOH A 32 632 63 HOH HOH . H 4 HOH A 33 633 66 HOH HOH . H 4 HOH A 34 634 67 HOH HOH . H 4 HOH A 35 635 68 HOH HOH . H 4 HOH A 36 636 72 HOH HOH . H 4 HOH A 37 637 73 HOH HOH . H 4 HOH A 38 638 75 HOH HOH . H 4 HOH A 39 639 80 HOH HOH . H 4 HOH A 40 640 82 HOH HOH . H 4 HOH A 41 641 84 HOH HOH . H 4 HOH A 42 642 85 HOH HOH . H 4 HOH A 43 643 87 HOH HOH . H 4 HOH A 44 644 89 HOH HOH . H 4 HOH A 45 645 90 HOH HOH . H 4 HOH A 46 646 93 HOH HOH . H 4 HOH A 47 647 94 HOH HOH . H 4 HOH A 48 648 97 HOH HOH . H 4 HOH A 49 649 99 HOH HOH . H 4 HOH A 50 650 100 HOH HOH . H 4 HOH A 51 651 103 HOH HOH . H 4 HOH A 52 652 104 HOH HOH . H 4 HOH A 53 653 107 HOH HOH . H 4 HOH A 54 654 108 HOH HOH . H 4 HOH A 55 655 111 HOH HOH . H 4 HOH A 56 656 114 HOH HOH . H 4 HOH A 57 657 115 HOH HOH . H 4 HOH A 58 658 119 HOH HOH . H 4 HOH A 59 659 120 HOH HOH . H 4 HOH A 60 660 121 HOH HOH . H 4 HOH A 61 661 122 HOH HOH . H 4 HOH A 62 662 126 HOH HOH . H 4 HOH A 63 663 127 HOH HOH . H 4 HOH A 64 664 129 HOH HOH . H 4 HOH A 65 665 131 HOH HOH . H 4 HOH A 66 666 133 HOH HOH . H 4 HOH A 67 667 136 HOH HOH . I 4 HOH B 1 601 1 HOH HOH . I 4 HOH B 2 602 3 HOH HOH . I 4 HOH B 3 603 8 HOH HOH . I 4 HOH B 4 604 10 HOH HOH . I 4 HOH B 5 605 11 HOH HOH . I 4 HOH B 6 606 12 HOH HOH . I 4 HOH B 7 607 13 HOH HOH . I 4 HOH B 8 608 15 HOH HOH . I 4 HOH B 9 609 16 HOH HOH . I 4 HOH B 10 610 17 HOH HOH . I 4 HOH B 11 611 18 HOH HOH . I 4 HOH B 12 612 28 HOH HOH . I 4 HOH B 13 613 29 HOH HOH . I 4 HOH B 14 614 32 HOH HOH . I 4 HOH B 15 615 33 HOH HOH . I 4 HOH B 16 616 34 HOH HOH . I 4 HOH B 17 617 36 HOH HOH . I 4 HOH B 18 618 38 HOH HOH . I 4 HOH B 19 619 42 HOH HOH . I 4 HOH B 20 620 44 HOH HOH . I 4 HOH B 21 621 45 HOH HOH . I 4 HOH B 22 622 47 HOH HOH . I 4 HOH B 23 623 48 HOH HOH . I 4 HOH B 24 624 50 HOH HOH . I 4 HOH B 25 625 52 HOH HOH . I 4 HOH B 26 626 54 HOH HOH . I 4 HOH B 27 627 57 HOH HOH . I 4 HOH B 28 628 58 HOH HOH . I 4 HOH B 29 629 59 HOH HOH . I 4 HOH B 30 630 61 HOH HOH . I 4 HOH B 31 631 62 HOH HOH . I 4 HOH B 32 632 64 HOH HOH . I 4 HOH B 33 633 65 HOH HOH . I 4 HOH B 34 634 69 HOH HOH . I 4 HOH B 35 635 70 HOH HOH . I 4 HOH B 36 636 71 HOH HOH . I 4 HOH B 37 637 74 HOH HOH . I 4 HOH B 38 638 76 HOH HOH . I 4 HOH B 39 639 77 HOH HOH . I 4 HOH B 40 640 78 HOH HOH . I 4 HOH B 41 641 79 HOH HOH . I 4 HOH B 42 642 81 HOH HOH . I 4 HOH B 43 643 83 HOH HOH . I 4 HOH B 44 644 86 HOH HOH . I 4 HOH B 45 645 88 HOH HOH . I 4 HOH B 46 646 91 HOH HOH . I 4 HOH B 47 647 92 HOH HOH . I 4 HOH B 48 648 95 HOH HOH . I 4 HOH B 49 649 96 HOH HOH . I 4 HOH B 50 650 98 HOH HOH . I 4 HOH B 51 651 101 HOH HOH . I 4 HOH B 52 652 102 HOH HOH . I 4 HOH B 53 653 105 HOH HOH . I 4 HOH B 54 654 106 HOH HOH . I 4 HOH B 55 655 109 HOH HOH . I 4 HOH B 56 656 110 HOH HOH . I 4 HOH B 57 657 112 HOH HOH . I 4 HOH B 58 658 113 HOH HOH . I 4 HOH B 59 659 116 HOH HOH . I 4 HOH B 60 660 117 HOH HOH . I 4 HOH B 61 661 118 HOH HOH . I 4 HOH B 62 662 123 HOH HOH . I 4 HOH B 63 663 124 HOH HOH . I 4 HOH B 64 664 125 HOH HOH . I 4 HOH B 65 665 128 HOH HOH . I 4 HOH B 66 666 130 HOH HOH . I 4 HOH B 67 667 132 HOH HOH . I 4 HOH B 68 668 134 HOH HOH . I 4 HOH B 69 669 135 HOH HOH . I 4 HOH B 70 670 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHS . . . E 2 26.466 19.815 36.242 1 67.41 ? C1 IHS 501 B 1 HETATM 2 O O1 IHS . . . E 2 27.401 20.757 36.762 1 76.29 ? O1 IHS 501 B 1 HETATM 3 S S1 IHS . . . E 2 27.026 21.353 38.024 1 80.25 ? S1 IHS 501 B 1 HETATM 4 C C2 IHS . . . E 2 27.204 18.476 35.962 1 55.65 ? C2 IHS 501 B 1 HETATM 5 O O2 IHS . . . E 2 25.564 21.685 38.079 1 70.97 ? O2 IHS 501 B 1 HETATM 6 S S2 IHS . . . E 2 29.621 18.481 36.29 1 55.89 ? S2 IHS 501 B 1 HETATM 7 C C3 IHS . . . E 2 26.178 17.473 35.399 1 54.19 ? C3 IHS 501 B 1 HETATM 8 O O3 IHS . . . E 2 27.802 22.632 38.169 1 81.62 ? O3 IHS 501 B 1 HETATM 9 S S3 IHS . . . E 2 26.87 15.091 35.662 1 32.86 ? S3 IHS 501 B 1 HETATM 10 C C4 IHS . . . E 2 25.528 17.964 34.109 1 52.81 ? C4 IHS 501 B 1 HETATM 11 O O4 IHS . . . E 2 27.37 20.396 39.138 1 82.86 ? O4 IHS 501 B 1 HETATM 12 S S4 IHS . . . E 2 24.37 16.605 32.306 1 49.93 ? S4 IHS 501 B 1 HETATM 13 C C5 IHS . . . E 2 24.81 19.309 34.416 1 54.42 ? C5 IHS 501 B 1 HETATM 14 S S5 IHS . . . E 2 22.478 20.095 33.912 1 76.64 ? S5 IHS 501 B 1 HETATM 15 C C6 IHS . . . E 2 25.872 20.34 34.913 1 68.11 ? C6 IHS 501 B 1 HETATM 16 S S6 IHS . . . E 2 25.666 22.553 34.168 1 89.71 ? S6 IHS 501 B 1 HETATM 17 O O12 IHS . . . E 2 28.502 18.597 35.333 1 69.11 ? O12 IHS 501 B 1 HETATM 18 O O13 IHS . . . E 2 26.93 16.315 34.922 1 36.49 ? O13 IHS 501 B 1 HETATM 19 O O14 IHS . . . E 2 24.539 16.978 33.704 1 58.64 ? O14 IHS 501 B 1 HETATM 20 O O15 IHS . . . E 2 23.848 19.808 33.428 1 79.38 ? O15 IHS 501 B 1 HETATM 21 O O16 IHS . . . E 2 25.228 21.576 35.184 1 80.47 ? O16 IHS 501 B 1 HETATM 22 O O22 IHS . . . E 2 30.86 18.983 35.627 1 60.73 ? O22 IHS 501 B 1 HETATM 23 O O23 IHS . . . E 2 27.476 13.957 34.921 1 40.67 ? O23 IHS 501 B 1 HETATM 24 O O24 IHS . . . E 2 23.494 15.388 32.279 1 53.56 ? O24 IHS 501 B 1 HETATM 25 O O25 IHS . . . E 2 21.756 18.821 34.252 1 53.61 ? O25 IHS 501 B 1 HETATM 26 O O26 IHS . . . E 2 26.528 21.898 33.126 1 81.06 ? O26 IHS 501 B 1 HETATM 27 O O32 IHS . . . E 2 29.396 19.288 37.531 1 53.85 ? O32 IHS 501 B 1 HETATM 28 O O33 IHS . . . E 2 25.422 14.767 35.92 1 37.33 ? O33 IHS 501 B 1 HETATM 29 O O34 IHS . . . E 2 25.674 16.262 31.657 1 42.09 ? O34 IHS 501 B 1 HETATM 30 O O35 IHS . . . E 2 22.501 20.958 35.145 1 83.61 ? O35 IHS 501 B 1 HETATM 31 O O36 IHS . . . E 2 26.458 23.664 34.806 1 90.87 ? O36 IHS 501 B 1 HETATM 32 O O42 IHS . . . E 2 29.809 17.049 36.662 1 56.78 ? O42 IHS 501 B 1 HETATM 33 O O43 IHS . . . E 2 27.607 15.263 36.952 1 37.05 ? O43 IHS 501 B 1 HETATM 34 O O44 IHS . . . E 2 23.767 17.743 31.53 1 51.86 ? O44 IHS 501 B 1 HETATM 35 O O45 IHS . . . E 2 21.717 20.818 32.835 1 75.71 ? O45 IHS 501 B 1 HETATM 36 O O46 IHS . . . E 2 24.479 23.152 33.466 1 90.08 ? O46 IHS 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #