data_4FEY # _model_server_result.job_id DVVdwPhYpJKAgLnd5BPYDw _model_server_result.datetime_utc '2024-11-09 02:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FEY # _exptl.entry_id 4FEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FEY _cell.length_a 66.616 _cell.length_b 66.616 _cell.length_c 206.524 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4FEY _atom_sites.fract_transf_matrix[1][1] 0.015011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 63 HOH HOH . C 3 HOH A 63 563 64 HOH HOH . C 3 HOH A 64 564 65 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 68 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 75 HOH HOH . C 3 HOH A 75 575 76 HOH HOH . C 3 HOH A 76 576 77 HOH HOH . C 3 HOH A 77 577 78 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 80 HOH HOH . C 3 HOH A 80 580 81 HOH HOH . C 3 HOH A 81 581 82 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 95 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 97 HOH HOH . C 3 HOH A 97 597 98 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 101 HOH HOH . C 3 HOH A 101 601 102 HOH HOH . C 3 HOH A 102 602 103 HOH HOH . C 3 HOH A 103 603 104 HOH HOH . C 3 HOH A 104 604 105 HOH HOH . C 3 HOH A 105 605 106 HOH HOH . C 3 HOH A 106 606 107 HOH HOH . C 3 HOH A 107 607 108 HOH HOH . C 3 HOH A 108 608 109 HOH HOH . C 3 HOH A 109 609 110 HOH HOH . C 3 HOH A 110 610 111 HOH HOH . C 3 HOH A 111 611 112 HOH HOH . C 3 HOH A 112 612 113 HOH HOH . C 3 HOH A 113 613 114 HOH HOH . C 3 HOH A 114 614 115 HOH HOH . C 3 HOH A 115 615 116 HOH HOH . C 3 HOH A 116 616 117 HOH HOH . C 3 HOH A 117 617 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -6.782 76.623 -30.975 0.8 164 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -6.971 77.484 -32.206 0.8 68.07 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -5.826 75.472 -31.187 0.8 232.86 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -6.472 77.45 -29.756 0.8 86.7 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -8.471 74.347 -30.572 0.8 105.29 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -7.878 73.852 -29.272 0.8 71.62 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -7.977 73.76 -31.872 0.8 300 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -8.228 75.949 -30.644 0.8 83.26 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -10.074 74.114 -30.524 0.8 68.99 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -10.995 75.21 -30.483 0.8 299.94 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -12.235 74.959 -31.338 0.8 59.23 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -13.407 74.82 -30.521 0.8 128.2 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -12.487 76.153 -32.247 0.8 153.83 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -12.793 75.694 -33.568 0.8 88.04 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -13.694 76.854 -31.653 0.8 131.88 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -14.534 77.505 -32.616 0.8 84.29 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -14.428 75.717 -30.973 0.8 132.91 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -15.26 76.244 -29.864 0.8 299.98 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -15.238 77.5 -29.378 0.8 55.75 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -16.148 77.66 -28.387 0.8 78.21 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -16.827 76.505 -28.265 0.8 53.43 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -17.919 75.984 -27.397 0.8 62.61 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -18.55 76.765 -26.474 0.8 63.66 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -18.284 74.69 -27.584 0.8 75.97 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -17.738 73.912 -28.546 0.8 62.31 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -16.715 74.303 -29.334 0.8 107.22 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -16.226 75.568 -29.244 0.8 54.95 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #