data_4FFB # _model_server_result.job_id TBdczl7gluGsA5oSUPyjvg _model_server_result.datetime_utc '2025-03-13 17:42:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ffb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 4FFB # _exptl.entry_id 4FFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.31 _cell.angle_gamma 90 _cell.entry_id 4FFB _cell.length_a 89.12 _cell.length_b 98.04 _cell.length_c 91.366 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 72 A GLU 72 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 D MG MG . A MG 501 1_555 E O2B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 D MG MG . A MG 501 1_555 E O2G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 F MG MG . B MG 501 1_555 G O2B GTP . B GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 F MG MG . B MG 501 1_555 G O2G GTP . B GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc6 F MG MG . B MG 501 1_555 G O3G GTP . B GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 4FFB _atom_sites.fract_transf_matrix[1][1] 0.011221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 501 MG MG . E 5 GTP A 1 502 502 GTP GTP . F 4 MG B 1 501 501 MG MG . G 5 GTP B 1 502 502 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 16.938 0.343 37.791 1 35.8 ? PG GTP 502 A 1 HETATM 2 O O1G GTP . . . E 5 15.979 -0.792 37.537 1 35.8 ? O1G GTP 502 A 1 HETATM 3 O O2G GTP . . . E 5 16.492 1.098 39.021 1 35.8 ? O2G GTP 502 A 1 HETATM 4 O O3G GTP . . . E 5 16.923 1.239 36.575 1 35.8 ? O3G GTP 502 A 1 HETATM 5 O O3B GTP . . . E 5 18.414 -0.277 38.004 1 35.8 ? O3B GTP 502 A 1 HETATM 6 P PB GTP . . . E 5 19.519 0.483 38.897 1 35.8 ? PB GTP 502 A 1 HETATM 7 O O1B GTP . . . E 5 20.276 1.454 38.035 1 35.8 ? O1B GTP 502 A 1 HETATM 8 O O2B GTP . . . E 5 18.858 1.178 40.065 1 35.8 ? O2B GTP 502 A 1 HETATM 9 O O3A GTP . . . E 5 20.548 -0.629 39.449 1 35.8 ? O3A GTP 502 A 1 HETATM 10 P PA GTP . . . E 5 20.086 -1.788 40.466 1 35.8 ? PA GTP 502 A 1 HETATM 11 O O1A GTP . . . E 5 20.959 -1.714 41.693 1 35.8 ? O1A GTP 502 A 1 HETATM 12 O O2A GTP . . . E 5 18.63 -1.637 40.844 1 35.8 ? O2A GTP 502 A 1 HETATM 13 O O5' GTP . . . E 5 20.359 -3.168 39.676 1 35.8 ? O5' GTP 502 A 1 HETATM 14 C C5' GTP . . . E 5 20.114 -4.424 40.277 1 35.8 ? C5' GTP 502 A 1 HETATM 15 C C4' GTP . . . E 5 21.398 -5.103 40.741 1 35.8 ? C4' GTP 502 A 1 HETATM 16 O O4' GTP . . . E 5 22.163 -4.201 41.511 1 35.8 ? O4' GTP 502 A 1 HETATM 17 C C3' GTP . . . E 5 21.105 -6.303 41.628 1 35.8 ? C3' GTP 502 A 1 HETATM 18 O O3' GTP . . . E 5 21.532 -7.487 40.995 1 35.8 ? O3' GTP 502 A 1 HETATM 19 C C2' GTP . . . E 5 21.925 -6.1 42.882 1 35.8 ? C2' GTP 502 A 1 HETATM 20 O O2' GTP . . . E 5 22.759 -7.213 43.093 1 35.8 ? O2' GTP 502 A 1 HETATM 21 C C1' GTP . . . E 5 22.758 -4.859 42.611 1 35.8 ? C1' GTP 502 A 1 HETATM 22 N N9 GTP . . . E 5 22.767 -3.978 43.791 1 35.8 ? N9 GTP 502 A 1 HETATM 23 C C8 GTP . . . E 5 21.753 -3.167 44.226 1 35.8 ? C8 GTP 502 A 1 HETATM 24 N N7 GTP . . . E 5 22.17 -2.518 45.337 1 35.8 ? N7 GTP 502 A 1 HETATM 25 C C5 GTP . . . E 5 23.438 -2.898 45.612 1 35.8 ? C5 GTP 502 A 1 HETATM 26 C C6 GTP . . . E 5 24.327 -2.548 46.62 1 35.8 ? C6 GTP 502 A 1 HETATM 27 O O6 GTP . . . E 5 24.001 -1.737 47.484 1 35.8 ? O6 GTP 502 A 1 HETATM 28 N N1 GTP . . . E 5 25.584 -3.116 46.646 1 35.8 ? N1 GTP 502 A 1 HETATM 29 C C2 GTP . . . E 5 25.948 -4.025 45.674 1 35.8 ? C2 GTP 502 A 1 HETATM 30 N N2 GTP . . . E 5 27.158 -4.574 45.696 1 35.8 ? N2 GTP 502 A 1 HETATM 31 N N3 GTP . . . E 5 25.06 -4.369 44.678 1 35.8 ? N3 GTP 502 A 1 HETATM 32 C C4 GTP . . . E 5 23.824 -3.817 44.648 1 35.8 ? C4 GTP 502 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #