data_4FFS # _model_server_result.job_id kbu76quWIaYQ76raNddbjw _model_server_result.datetime_utc '2024-11-25 10:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ffs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4FFS # _exptl.entry_id 4FFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FFS _cell.length_a 157.732 _cell.length_b 157.732 _cell.length_c 157.732 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H25 N5 O S' _chem_comp.formula_weight 335.468 _chem_comp.id BIG _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'butylthio-DADMe-Immucillin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 BIG doub 70 n y C2 N1 BIG sing 71 n y C5 C4 BIG doub 72 n y C5 N7 BIG sing 73 n y C5 C6 BIG sing 74 n y C4 N3 BIG sing 75 n y C4 C9 BIG sing 76 n y C8 N7 BIG sing 77 n y C8 C9 BIG doub 78 n y O3' C3' BIG sing 79 n n C3' C4' BIG sing 80 n n C3' C2' BIG sing 81 n n C4' C5' BIG sing 82 n n C4' C1' BIG sing 83 n n C5' S5' BIG sing 84 n n S5' C20 BIG sing 85 n n C20 C21 BIG sing 86 n n C21 C22 BIG sing 87 n n C22 C23 BIG sing 88 n n C1' N1' BIG sing 89 n n N1' C2' BIG sing 90 n n N1' C10 BIG sing 91 n n C10 C9 BIG sing 92 n n C6 N6 BIG sing 93 n n C6 N1 BIG doub 94 n y C2 H2 BIG sing 95 n n C8 H8 BIG sing 96 n n O3' HO3' BIG sing 97 n n C3' H3' BIG sing 98 n n C4' H4' BIG sing 99 n n C5' H5' BIG sing 100 n n C5' "H5'A" BIG sing 101 n n C20 H20 BIG sing 102 n n C20 H20A BIG sing 103 n n C21 H21 BIG sing 104 n n C21 H21A BIG sing 105 n n C22 H22 BIG sing 106 n n C22 H22A BIG sing 107 n n C23 H23 BIG sing 108 n n C23 H23A BIG sing 109 n n C23 H23B BIG sing 110 n n C1' H1' BIG sing 111 n n C1' "H1'A" BIG sing 112 n n C2' H2' BIG sing 113 n n C2' "H2'A" BIG sing 114 n n C10 H10 BIG sing 115 n n C10 H10A BIG sing 116 n n N7 HN7 BIG sing 117 n n N6 HN6 BIG sing 118 n n N6 HN6A BIG sing 119 n n # _atom_sites.entry_id 4FFS _atom_sites.fract_transf_matrix[1][1] 0.00634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BIG A 1 301 1 BIG BIG . C 3 CL A 1 302 1 CL CL . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 55 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 59 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 65 HOH HOH . D 4 HOH A 66 466 66 HOH HOH . D 4 HOH A 67 467 67 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . D 4 HOH A 77 477 77 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 80 HOH HOH . D 4 HOH A 81 481 81 HOH HOH . D 4 HOH A 82 482 82 HOH HOH . D 4 HOH A 83 483 83 HOH HOH . D 4 HOH A 84 484 84 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 86 HOH HOH . D 4 HOH A 87 487 87 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 91 HOH HOH . D 4 HOH A 92 492 92 HOH HOH . D 4 HOH A 93 493 93 HOH HOH . D 4 HOH A 94 494 94 HOH HOH . D 4 HOH A 95 495 95 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 97 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 99 HOH HOH . D 4 HOH A 100 500 100 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 102 HOH HOH . D 4 HOH A 103 503 103 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 105 HOH HOH . D 4 HOH A 106 506 106 HOH HOH . D 4 HOH A 107 507 107 HOH HOH . D 4 HOH A 108 508 108 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 110 HOH HOH . D 4 HOH A 111 511 111 HOH HOH . D 4 HOH A 112 512 112 HOH HOH . D 4 HOH A 113 513 113 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 115 HOH HOH . D 4 HOH A 116 516 116 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 119 HOH HOH . D 4 HOH A 120 520 120 HOH HOH . D 4 HOH A 121 521 121 HOH HOH . D 4 HOH A 122 522 122 HOH HOH . D 4 HOH A 123 523 123 HOH HOH . D 4 HOH A 124 524 124 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 126 HOH HOH . D 4 HOH A 127 527 127 HOH HOH . D 4 HOH A 128 528 128 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 131 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 134 HOH HOH . D 4 HOH A 135 535 135 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 137 HOH HOH . D 4 HOH A 138 538 138 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 140 HOH HOH . D 4 HOH A 141 541 141 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 144 HOH HOH . D 4 HOH A 145 545 145 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 147 HOH HOH . D 4 HOH A 148 548 148 HOH HOH . D 4 HOH A 149 549 149 HOH HOH . D 4 HOH A 150 550 150 HOH HOH . D 4 HOH A 151 551 151 HOH HOH . D 4 HOH A 152 552 152 HOH HOH . D 4 HOH A 153 553 153 HOH HOH . D 4 HOH A 154 554 154 HOH HOH . D 4 HOH A 155 555 155 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 157 HOH HOH . D 4 HOH A 158 558 158 HOH HOH . D 4 HOH A 159 559 159 HOH HOH . D 4 HOH A 160 560 160 HOH HOH . D 4 HOH A 161 561 161 HOH HOH . D 4 HOH A 162 562 162 HOH HOH . D 4 HOH A 163 563 163 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 165 HOH HOH . D 4 HOH A 166 566 166 HOH HOH . D 4 HOH A 167 567 167 HOH HOH . D 4 HOH A 168 568 168 HOH HOH . D 4 HOH A 169 569 169 HOH HOH . D 4 HOH A 170 570 170 HOH HOH . D 4 HOH A 171 571 171 HOH HOH . D 4 HOH A 172 572 172 HOH HOH . D 4 HOH A 173 573 173 HOH HOH . D 4 HOH A 174 574 174 HOH HOH . D 4 HOH A 175 575 175 HOH HOH . D 4 HOH A 176 576 176 HOH HOH . D 4 HOH A 177 577 177 HOH HOH . D 4 HOH A 178 578 178 HOH HOH . D 4 HOH A 179 579 179 HOH HOH . D 4 HOH A 180 580 180 HOH HOH . D 4 HOH A 181 581 181 HOH HOH . D 4 HOH A 182 582 182 HOH HOH . D 4 HOH A 183 583 183 HOH HOH . D 4 HOH A 184 584 184 HOH HOH . D 4 HOH A 185 585 185 HOH HOH . D 4 HOH A 186 586 186 HOH HOH . D 4 HOH A 187 587 187 HOH HOH . D 4 HOH A 188 588 188 HOH HOH . D 4 HOH A 189 589 189 HOH HOH . D 4 HOH A 190 590 190 HOH HOH . D 4 HOH A 191 591 191 HOH HOH . D 4 HOH A 192 592 192 HOH HOH . D 4 HOH A 193 593 193 HOH HOH . D 4 HOH A 194 594 194 HOH HOH . D 4 HOH A 195 595 195 HOH HOH . D 4 HOH A 196 596 196 HOH HOH . D 4 HOH A 197 597 197 HOH HOH . D 4 HOH A 198 598 198 HOH HOH . D 4 HOH A 199 599 199 HOH HOH . D 4 HOH A 200 600 200 HOH HOH . D 4 HOH A 201 601 201 HOH HOH . D 4 HOH A 202 602 202 HOH HOH . D 4 HOH A 203 603 203 HOH HOH . D 4 HOH A 204 604 204 HOH HOH . D 4 HOH A 205 605 205 HOH HOH . D 4 HOH A 206 606 206 HOH HOH . D 4 HOH A 207 607 207 HOH HOH . D 4 HOH A 208 608 208 HOH HOH . D 4 HOH A 209 609 209 HOH HOH . D 4 HOH A 210 610 210 HOH HOH . D 4 HOH A 211 611 211 HOH HOH . D 4 HOH A 212 612 212 HOH HOH . D 4 HOH A 213 613 213 HOH HOH . D 4 HOH A 214 614 214 HOH HOH . D 4 HOH A 215 615 215 HOH HOH . D 4 HOH A 216 616 216 HOH HOH . D 4 HOH A 217 617 217 HOH HOH . D 4 HOH A 218 618 218 HOH HOH . D 4 HOH A 219 619 219 HOH HOH . D 4 HOH A 220 620 220 HOH HOH . D 4 HOH A 221 621 221 HOH HOH . D 4 HOH A 222 622 222 HOH HOH . D 4 HOH A 223 623 223 HOH HOH . D 4 HOH A 224 624 224 HOH HOH . D 4 HOH A 225 625 225 HOH HOH . D 4 HOH A 226 626 226 HOH HOH . D 4 HOH A 227 627 227 HOH HOH . D 4 HOH A 228 628 228 HOH HOH . D 4 HOH A 229 629 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BIG . . . B 2 -37.093 -48.868 7.983 1 19.33 ? C2 BIG 301 A 1 HETATM 2 C C5 BIG . . . B 2 -35.896 -50.309 10.038 1 18.54 ? C5 BIG 301 A 1 HETATM 3 C C4 BIG . . . B 2 -35.38 -49.04 9.555 1 18.37 ? C4 BIG 301 A 1 HETATM 4 C C8 BIG . . . B 2 -34.079 -49.834 11.259 1 19.03 ? C8 BIG 301 A 1 HETATM 5 O O3' BIG . . . B 2 -34.102 -43.468 10.979 1 20.24 ? O3' BIG 301 A 1 HETATM 6 C C3' BIG . . . B 2 -35.11 -44.476 10.848 1 20.87 ? C3' BIG 301 A 1 HETATM 7 C C4' BIG . . . B 2 -35.279 -45.239 12.155 1 22.08 ? C4' BIG 301 A 1 HETATM 8 C C5' BIG . . . B 2 -36.598 -46.003 12.247 1 22.97 ? C5' BIG 301 A 1 HETATM 9 S S5' BIG . . . B 2 -37.971 -44.941 12.493 1 24.98 ? S5' BIG 301 A 1 HETATM 10 C C20 BIG . . . B 2 -37.983 -44.741 14.255 1 29.28 ? C20 BIG 301 A 1 HETATM 11 C C21 BIG . . . B 2 -39.065 -43.727 14.622 1 29.76 ? C21 BIG 301 A 1 HETATM 12 C C22 BIG . . . B 2 -39.346 -43.647 16.113 1 32.08 ? C22 BIG 301 A 1 HETATM 13 C C23 BIG . . . B 2 -38.101 -43.351 16.9 1 34.27 ? C23 BIG 301 A 1 HETATM 14 C C1' BIG . . . B 2 -34.144 -46.247 12.129 1 20.87 ? C1' BIG 301 A 1 HETATM 15 N N1' BIG . . . B 2 -33.647 -46.248 10.726 1 20.18 ? N1' BIG 301 A 1 HETATM 16 C C2' BIG . . . B 2 -34.618 -45.537 9.881 1 19.59 ? C2' BIG 301 A 1 HETATM 17 C C10 BIG . . . B 2 -33.264 -47.55 10.228 1 18.99 ? C10 BIG 301 A 1 HETATM 18 N N7 BIG . . . B 2 -35.093 -50.739 11.034 1 18.73 ? N7 BIG 301 A 1 HETATM 19 C C6 BIG . . . B 2 -37.098 -50.807 9.366 1 19.37 ? C6 BIG 301 A 1 HETATM 20 N N6 BIG . . . B 2 -37.633 -51.999 9.783 1 19.72 ? N6 BIG 301 A 1 HETATM 21 N N3 BIG . . . B 2 -35.974 -48.351 8.557 1 18.06 ? N3 BIG 301 A 1 HETATM 22 C C9 BIG . . . B 2 -34.195 -48.737 10.374 1 18.65 ? C9 BIG 301 A 1 HETATM 23 N N1 BIG . . . B 2 -37.644 -50.051 8.382 1 18.59 ? N1 BIG 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #