data_4FG8 # _model_server_result.job_id PJydERjYu-gxLLa-HKsQHg _model_server_result.datetime_utc '2024-10-21 09:42:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4FG8 # _exptl.entry_id 4FG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FG8 _cell.length_a 83.415 _cell.length_b 83.415 _cell.length_c 153.372 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4FG8 _atom_sites.fract_transf_matrix[1][1] 0.011988 _atom_sites.fract_transf_matrix[1][2] 0.006921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 401 411 ATP ATP . D 2 ATP B 1 401 412 ATP ATP . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 6 HOH HOH . E 3 HOH A 5 505 9 HOH HOH . E 3 HOH A 6 506 10 HOH HOH . E 3 HOH A 7 507 11 HOH HOH . E 3 HOH A 8 508 12 HOH HOH . E 3 HOH A 9 509 14 HOH HOH . E 3 HOH A 10 510 15 HOH HOH . E 3 HOH A 11 511 20 HOH HOH . E 3 HOH A 12 512 22 HOH HOH . E 3 HOH A 13 513 23 HOH HOH . E 3 HOH A 14 514 25 HOH HOH . E 3 HOH A 15 515 32 HOH HOH . E 3 HOH A 16 516 33 HOH HOH . E 3 HOH A 17 517 35 HOH HOH . E 3 HOH A 18 518 36 HOH HOH . E 3 HOH A 19 519 38 HOH HOH . E 3 HOH A 20 520 39 HOH HOH . E 3 HOH A 21 521 40 HOH HOH . E 3 HOH A 22 522 41 HOH HOH . E 3 HOH A 23 523 42 HOH HOH . E 3 HOH A 24 524 43 HOH HOH . E 3 HOH A 25 525 46 HOH HOH . E 3 HOH A 26 526 48 HOH HOH . E 3 HOH A 27 527 51 HOH HOH . E 3 HOH A 28 528 52 HOH HOH . E 3 HOH A 29 529 55 HOH HOH . E 3 HOH A 30 530 56 HOH HOH . E 3 HOH A 31 531 58 HOH HOH . E 3 HOH A 32 532 59 HOH HOH . E 3 HOH A 33 533 60 HOH HOH . E 3 HOH A 34 534 61 HOH HOH . E 3 HOH A 35 535 64 HOH HOH . E 3 HOH A 36 536 66 HOH HOH . E 3 HOH A 37 537 68 HOH HOH . E 3 HOH A 38 538 69 HOH HOH . E 3 HOH A 39 539 73 HOH HOH . E 3 HOH A 40 540 74 HOH HOH . E 3 HOH A 41 541 78 HOH HOH . E 3 HOH A 42 542 79 HOH HOH . E 3 HOH A 43 543 81 HOH HOH . E 3 HOH A 44 544 82 HOH HOH . E 3 HOH A 45 545 83 HOH HOH . E 3 HOH A 46 546 87 HOH HOH . E 3 HOH A 47 547 90 HOH HOH . E 3 HOH A 48 548 92 HOH HOH . E 3 HOH A 49 549 96 HOH HOH . E 3 HOH A 50 550 98 HOH HOH . E 3 HOH A 51 551 99 HOH HOH . E 3 HOH A 52 552 101 HOH HOH . E 3 HOH A 53 553 102 HOH HOH . E 3 HOH A 54 554 103 HOH HOH . E 3 HOH A 55 555 106 HOH HOH . E 3 HOH A 56 556 107 HOH HOH . E 3 HOH A 57 557 109 HOH HOH . E 3 HOH A 58 558 110 HOH HOH . E 3 HOH A 59 559 111 HOH HOH . E 3 HOH A 60 560 113 HOH HOH . E 3 HOH A 61 561 117 HOH HOH . E 3 HOH A 62 562 118 HOH HOH . E 3 HOH A 63 563 119 HOH HOH . E 3 HOH A 64 564 123 HOH HOH . E 3 HOH A 65 565 124 HOH HOH . E 3 HOH A 66 566 125 HOH HOH . E 3 HOH A 67 567 128 HOH HOH . E 3 HOH A 68 568 130 HOH HOH . E 3 HOH A 69 569 131 HOH HOH . E 3 HOH A 70 570 133 HOH HOH . E 3 HOH A 71 571 135 HOH HOH . F 3 HOH B 1 501 2 HOH HOH . F 3 HOH B 2 502 3 HOH HOH . F 3 HOH B 3 503 7 HOH HOH . F 3 HOH B 4 504 8 HOH HOH . F 3 HOH B 5 505 13 HOH HOH . F 3 HOH B 6 506 16 HOH HOH . F 3 HOH B 7 507 17 HOH HOH . F 3 HOH B 8 508 18 HOH HOH . F 3 HOH B 9 509 19 HOH HOH . F 3 HOH B 10 510 21 HOH HOH . F 3 HOH B 11 511 24 HOH HOH . F 3 HOH B 12 512 26 HOH HOH . F 3 HOH B 13 513 27 HOH HOH . F 3 HOH B 14 514 28 HOH HOH . F 3 HOH B 15 515 29 HOH HOH . F 3 HOH B 16 516 30 HOH HOH . F 3 HOH B 17 517 31 HOH HOH . F 3 HOH B 18 518 34 HOH HOH . F 3 HOH B 19 519 37 HOH HOH . F 3 HOH B 20 520 44 HOH HOH . F 3 HOH B 21 521 45 HOH HOH . F 3 HOH B 22 522 47 HOH HOH . F 3 HOH B 23 523 49 HOH HOH . F 3 HOH B 24 524 50 HOH HOH . F 3 HOH B 25 525 53 HOH HOH . F 3 HOH B 26 526 54 HOH HOH . F 3 HOH B 27 527 57 HOH HOH . F 3 HOH B 28 528 62 HOH HOH . F 3 HOH B 29 529 63 HOH HOH . F 3 HOH B 30 530 65 HOH HOH . F 3 HOH B 31 531 67 HOH HOH . F 3 HOH B 32 532 70 HOH HOH . F 3 HOH B 33 533 71 HOH HOH . F 3 HOH B 34 534 72 HOH HOH . F 3 HOH B 35 535 75 HOH HOH . F 3 HOH B 36 536 76 HOH HOH . F 3 HOH B 37 537 77 HOH HOH . F 3 HOH B 38 538 80 HOH HOH . F 3 HOH B 39 539 84 HOH HOH . F 3 HOH B 40 540 85 HOH HOH . F 3 HOH B 41 541 86 HOH HOH . F 3 HOH B 42 542 88 HOH HOH . F 3 HOH B 43 543 89 HOH HOH . F 3 HOH B 44 544 91 HOH HOH . F 3 HOH B 45 545 93 HOH HOH . F 3 HOH B 46 546 94 HOH HOH . F 3 HOH B 47 547 95 HOH HOH . F 3 HOH B 48 548 97 HOH HOH . F 3 HOH B 49 549 100 HOH HOH . F 3 HOH B 50 550 104 HOH HOH . F 3 HOH B 51 551 105 HOH HOH . F 3 HOH B 52 552 108 HOH HOH . F 3 HOH B 53 553 112 HOH HOH . F 3 HOH B 54 554 114 HOH HOH . F 3 HOH B 55 555 115 HOH HOH . F 3 HOH B 56 556 116 HOH HOH . F 3 HOH B 57 557 120 HOH HOH . F 3 HOH B 58 558 121 HOH HOH . F 3 HOH B 59 559 122 HOH HOH . F 3 HOH B 60 560 126 HOH HOH . F 3 HOH B 61 561 127 HOH HOH . F 3 HOH B 62 562 129 HOH HOH . F 3 HOH B 63 563 132 HOH HOH . F 3 HOH B 64 564 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 18.658 19.747 -11.395 1 183.64 ? PG ATP 401 B 1 HETATM 2 O O1G ATP . . . D 2 19.545 18.69 -11.942 1 184.26 ? O1G ATP 401 B 1 HETATM 3 O O2G ATP . . . D 2 17.093 19.366 -11.566 1 184.56 ? O2G ATP 401 B 1 HETATM 4 O O3G ATP . . . D 2 18.887 19.947 -9.808 1 184.52 ? O3G ATP 401 B 1 HETATM 5 P PB ATP . . . D 2 20.251 21.988 -11.983 1 168.27 ? PB ATP 401 B 1 HETATM 6 O O1B ATP . . . D 2 20.031 23.385 -11.55 1 169.07 ? O1B ATP 401 B 1 HETATM 7 O O2B ATP . . . D 2 21.214 21.148 -11.236 1 168.88 ? O2B ATP 401 B 1 HETATM 8 O O3B ATP . . . D 2 18.84 21.211 -12.052 1 176.69 ? O3B ATP 401 B 1 HETATM 9 P PA ATP . . . D 2 20.887 20.524 -14.191 1 139.71 ? PA ATP 401 B 1 HETATM 10 O O1A ATP . . . D 2 20.416 20.16 -15.548 1 140.25 ? O1A ATP 401 B 1 HETATM 11 O O2A ATP . . . D 2 21.815 19.643 -13.435 1 140.46 ? O2A ATP 401 B 1 HETATM 12 O O3A ATP . . . D 2 20.667 21.984 -13.552 1 154.51 ? O3A ATP 401 B 1 HETATM 13 O O5' ATP . . . D 2 22.123 21.248 -14.927 1 125.19 ? O5' ATP 401 B 1 HETATM 14 C C5' ATP . . . D 2 23.442 20.713 -14.788 1 104.29 ? C5' ATP 401 B 1 HETATM 15 C C4' ATP . . . D 2 24.449 21.343 -15.739 1 88.66 ? C4' ATP 401 B 1 HETATM 16 O O4' ATP . . . D 2 24.24 20.732 -17.018 1 80.4 ? O4' ATP 401 B 1 HETATM 17 C C3' ATP . . . D 2 24.23 22.843 -15.965 1 82.37 ? C3' ATP 401 B 1 HETATM 18 O O3' ATP . . . D 2 24.994 23.6 -15.039 1 80.83 ? O3' ATP 401 B 1 HETATM 19 C C2' ATP . . . D 2 24.804 23.048 -17.352 1 76.9 ? C2' ATP 401 B 1 HETATM 20 O O2' ATP . . . D 2 26.229 23.191 -17.301 1 75.16 ? O2' ATP 401 B 1 HETATM 21 C C1' ATP . . . D 2 24.458 21.737 -18.05 1 73.5 ? C1' ATP 401 B 1 HETATM 22 N N9 ATP . . . D 2 23.269 21.869 -18.926 1 63.18 ? N9 ATP 401 B 1 HETATM 23 C C8 ATP . . . D 2 21.994 21.783 -18.559 1 59.77 ? C8 ATP 401 B 1 HETATM 24 N N7 ATP . . . D 2 21.234 21.932 -19.635 1 57.19 ? N7 ATP 401 B 1 HETATM 25 C C5 ATP . . . D 2 22.02 22.091 -20.701 1 56.04 ? C5 ATP 401 B 1 HETATM 26 C C6 ATP . . . D 2 21.821 22.299 -22.077 1 51.88 ? C6 ATP 401 B 1 HETATM 27 N N6 ATP . . . D 2 20.634 22.354 -22.624 1 45.82 ? N6 ATP 401 B 1 HETATM 28 N N1 ATP . . . D 2 22.878 22.449 -22.882 1 50.86 ? N1 ATP 401 B 1 HETATM 29 C C2 ATP . . . D 2 24.115 22.389 -22.401 1 54.49 ? C2 ATP 401 B 1 HETATM 30 N N3 ATP . . . D 2 24.331 22.202 -21.11 1 56.42 ? N3 ATP 401 B 1 HETATM 31 C C4 ATP . . . D 2 23.319 22.052 -20.238 1 58.55 ? C4 ATP 401 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #