data_4FGG # _model_server_result.job_id gNPJjEcUTHMU1u60ulIt_A _model_server_result.datetime_utc '2024-11-22 03:08:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4FGG # _exptl.entry_id 4FGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FGG _cell.length_a 79.012 _cell.length_b 79.012 _cell.length_c 107.529 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 316 n n PA O2A NAP sing 317 n n PA O5B NAP sing 318 n n PA O3 NAP sing 319 n n O2A HOA2 NAP sing 320 n n O5B C5B NAP sing 321 n n C5B C4B NAP sing 322 n n C5B H51A NAP sing 323 n n C5B H52A NAP sing 324 n n C4B O4B NAP sing 325 n n C4B C3B NAP sing 326 n n C4B H4B NAP sing 327 n n O4B C1B NAP sing 328 n n C3B O3B NAP sing 329 n n C3B C2B NAP sing 330 n n C3B H3B NAP sing 331 n n O3B HO3A NAP sing 332 n n C2B O2B NAP sing 333 n n C2B C1B NAP sing 334 n n C2B H2B NAP sing 335 n n O2B P2B NAP sing 336 n n C1B N9A NAP sing 337 n n C1B H1B NAP sing 338 n n N9A C8A NAP sing 339 n y N9A C4A NAP sing 340 n y C8A N7A NAP doub 341 n y C8A H8A NAP sing 342 n n N7A C5A NAP sing 343 n y C5A C6A NAP sing 344 n y C5A C4A NAP doub 345 n y C6A N6A NAP sing 346 n n C6A N1A NAP doub 347 n y N6A H61A NAP sing 348 n n N6A H62A NAP sing 349 n n N1A C2A NAP sing 350 n y C2A N3A NAP doub 351 n y C2A H2A NAP sing 352 n n N3A C4A NAP sing 353 n y O3 PN NAP sing 354 n n PN O1N NAP doub 355 n n PN O2N NAP sing 356 n n PN O5D NAP sing 357 n n O5D C5D NAP sing 358 n n C5D C4D NAP sing 359 n n C5D H51N NAP sing 360 n n C5D H52N NAP sing 361 n n C4D O4D NAP sing 362 n n C4D C3D NAP sing 363 n n C4D H4D NAP sing 364 n n O4D C1D NAP sing 365 n n C3D O3D NAP sing 366 n n C3D C2D NAP sing 367 n n C3D H3D NAP sing 368 n n O3D HO3N NAP sing 369 n n C2D O2D NAP sing 370 n n C2D C1D NAP sing 371 n n C2D H2D NAP sing 372 n n O2D HO2N NAP sing 373 n n C1D N1N NAP sing 374 n n C1D H1D NAP sing 375 n n N1N C2N NAP sing 376 n y N1N C6N NAP doub 377 n y C2N C3N NAP doub 378 n y C2N H2N NAP sing 379 n n C3N C7N NAP sing 380 n n C3N C4N NAP sing 381 n y C7N O7N NAP doub 382 n n C7N N7N NAP sing 383 n n N7N H71N NAP sing 384 n n N7N H72N NAP sing 385 n n C4N C5N NAP doub 386 n y C4N H4N NAP sing 387 n n C5N C6N NAP sing 388 n y C5N H5N NAP sing 389 n n C6N H6N NAP sing 390 n n P2B O1X NAP doub 391 n n P2B O2X NAP sing 392 n n P2B O3X NAP sing 393 n n O2X HOP2 NAP sing 394 n n O3X HOP3 NAP sing 395 n n # _atom_sites.entry_id 4FGG _atom_sites.fract_transf_matrix[1][1] 0.012656 _atom_sites.fract_transf_matrix[1][2] 0.007307 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0U5 A 1 200 200 0U5 0U5 . C 3 NAP A 1 201 201 NAP NAP . D 4 GOL A 1 202 202 GOL GOL . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . E 5 HOH A 79 379 79 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 82 HOH HOH . E 5 HOH A 83 383 83 HOH HOH . E 5 HOH A 84 384 84 HOH HOH . E 5 HOH A 85 385 85 HOH HOH . E 5 HOH A 86 386 86 HOH HOH . E 5 HOH A 87 387 87 HOH HOH . E 5 HOH A 88 388 88 HOH HOH . E 5 HOH A 89 389 89 HOH HOH . E 5 HOH A 90 390 90 HOH HOH . E 5 HOH A 91 391 91 HOH HOH . E 5 HOH A 92 392 92 HOH HOH . E 5 HOH A 93 393 93 HOH HOH . E 5 HOH A 94 394 94 HOH HOH . E 5 HOH A 95 395 95 HOH HOH . E 5 HOH A 96 396 96 HOH HOH . E 5 HOH A 97 397 97 HOH HOH . E 5 HOH A 98 398 98 HOH HOH . E 5 HOH A 99 399 99 HOH HOH . E 5 HOH A 100 400 100 HOH HOH . E 5 HOH A 101 401 101 HOH HOH . E 5 HOH A 102 402 102 HOH HOH . E 5 HOH A 103 403 103 HOH HOH . E 5 HOH A 104 404 104 HOH HOH . E 5 HOH A 105 405 105 HOH HOH . E 5 HOH A 106 406 106 HOH HOH . E 5 HOH A 107 407 107 HOH HOH . E 5 HOH A 108 408 108 HOH HOH . E 5 HOH A 109 409 109 HOH HOH . E 5 HOH A 110 410 110 HOH HOH . E 5 HOH A 111 411 111 HOH HOH . E 5 HOH A 112 412 112 HOH HOH . E 5 HOH A 113 413 113 HOH HOH . E 5 HOH A 114 414 114 HOH HOH . E 5 HOH A 115 415 115 HOH HOH . E 5 HOH A 116 416 116 HOH HOH . E 5 HOH A 117 417 117 HOH HOH . E 5 HOH A 118 418 118 HOH HOH . E 5 HOH A 119 419 119 HOH HOH . E 5 HOH A 120 420 120 HOH HOH . E 5 HOH A 121 421 121 HOH HOH . E 5 HOH A 122 422 122 HOH HOH . E 5 HOH A 123 423 123 HOH HOH . E 5 HOH A 124 424 124 HOH HOH . E 5 HOH A 125 425 125 HOH HOH . E 5 HOH A 126 426 126 HOH HOH . E 5 HOH A 127 427 127 HOH HOH . E 5 HOH A 128 428 128 HOH HOH . E 5 HOH A 129 429 129 HOH HOH . E 5 HOH A 130 430 130 HOH HOH . E 5 HOH A 131 431 131 HOH HOH . E 5 HOH A 132 432 132 HOH HOH . E 5 HOH A 133 433 133 HOH HOH . E 5 HOH A 134 434 134 HOH HOH . E 5 HOH A 135 435 135 HOH HOH . E 5 HOH A 136 436 136 HOH HOH . E 5 HOH A 137 437 137 HOH HOH . E 5 HOH A 138 438 138 HOH HOH . E 5 HOH A 139 439 139 HOH HOH . E 5 HOH A 140 440 140 HOH HOH . E 5 HOH A 141 441 141 HOH HOH . E 5 HOH A 142 442 142 HOH HOH . E 5 HOH A 143 443 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 6.641 31.557 -6.373 1 11.6 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . C 3 6.777 30.251 -5.559 1 10.68 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . C 3 5.31 32.254 -6.184 1 10.3 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . C 3 7.738 32.515 -5.793 1 15.44 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . C 3 9.02 32.536 -6.362 1 14.91 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . C 3 9.972 33.215 -5.434 1 15.86 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . C 3 9.753 33.044 -3.967 1 16.26 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . C 3 11.456 33.216 -5.645 1 16.47 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . C 3 12.009 33.53 -6.86 1 16.38 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . C 3 11.854 33.947 -4.439 1 17.43 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . C 3 11.63 35.295 -4.438 1 18.87 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . C 3 11.141 33.058 -3.445 1 17.04 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . C 3 11.548 32.051 -2.511 1 16.9 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . C 3 11.218 30.765 -2.61 1 15.68 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . C 3 11.942 30.062 -1.606 1 17.15 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . C 3 12.734 30.986 -0.922 1 18.79 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . C 3 13.631 30.841 0.149 1 20.04 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . C 3 13.88 29.553 0.731 1 20.24 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . C 3 14.249 31.914 0.617 1 21.48 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . C 3 14.036 33.158 0.068 1 21.45 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . C 3 13.148 33.302 -0.992 1 20.1 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . C 3 12.521 32.213 -1.459 1 18.77 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . C 3 7.018 31.367 -7.91 1 15.13 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . C 3 6.773 30.085 -8.819 1 12.26 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . C 3 7.41 30.383 -10.21 1 15.11 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . C 3 7.456 28.894 -8.214 1 11.64 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . C 3 5.225 29.805 -9.053 1 11.2 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . C 3 4.432 30.783 -9.672 1 11.5 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . C 3 3.147 30.272 -10.271 1 12.22 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . C 3 2.262 29.507 -9.378 1 11.89 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . C 3 2.23 31.114 -11.159 1 13.19 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . C 3 2.109 30.774 -12.496 1 14.4 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . C 3 0.951 31.257 -10.4 1 12.33 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . C 3 -0.204 31.616 -11.046 1 12.45 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . C 3 0.907 30.015 -9.543 1 11.51 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . C 3 -0.022 29.679 -8.508 1 11.4 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . C 3 -1.168 28.797 -8.568 1 10.75 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . C 3 -1.749 28.262 -7.261 1 10.26 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . C 3 -2.896 27.343 -7.365 1 8.63 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . C 3 -3.508 27.045 -6.36 1 8.41 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . C 3 -3.321 26.955 -8.67 1 7.33 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . C 3 -1.293 28.809 -5.89 1 10.76 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . C 3 -0.439 30.093 -6.008 1 11.43 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . C 3 0.25 30.45 -7.325 1 11.51 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . C 3 12.766 36.265 -4.914 1 17.51 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . C 3 13.213 35.869 -6.357 1 15.71 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . C 3 12.158 37.708 -4.978 1 14.03 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . C 3 13.875 36.131 -3.902 1 17.33 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #