data_4FGH # _model_server_result.job_id p7s6_coMfaex2DPERnTOWw _model_server_result.datetime_utc '2024-11-25 05:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4FGH # _exptl.entry_id 4FGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FGH _cell.length_a 78.921 _cell.length_b 78.921 _cell.length_c 106.178 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 313 n n PA O2A NAP sing 314 n n PA O5B NAP sing 315 n n PA O3 NAP sing 316 n n O2A HOA2 NAP sing 317 n n O5B C5B NAP sing 318 n n C5B C4B NAP sing 319 n n C5B H51A NAP sing 320 n n C5B H52A NAP sing 321 n n C4B O4B NAP sing 322 n n C4B C3B NAP sing 323 n n C4B H4B NAP sing 324 n n O4B C1B NAP sing 325 n n C3B O3B NAP sing 326 n n C3B C2B NAP sing 327 n n C3B H3B NAP sing 328 n n O3B HO3A NAP sing 329 n n C2B O2B NAP sing 330 n n C2B C1B NAP sing 331 n n C2B H2B NAP sing 332 n n O2B P2B NAP sing 333 n n C1B N9A NAP sing 334 n n C1B H1B NAP sing 335 n n N9A C8A NAP sing 336 n y N9A C4A NAP sing 337 n y C8A N7A NAP doub 338 n y C8A H8A NAP sing 339 n n N7A C5A NAP sing 340 n y C5A C6A NAP sing 341 n y C5A C4A NAP doub 342 n y C6A N6A NAP sing 343 n n C6A N1A NAP doub 344 n y N6A H61A NAP sing 345 n n N6A H62A NAP sing 346 n n N1A C2A NAP sing 347 n y C2A N3A NAP doub 348 n y C2A H2A NAP sing 349 n n N3A C4A NAP sing 350 n y O3 PN NAP sing 351 n n PN O1N NAP doub 352 n n PN O2N NAP sing 353 n n PN O5D NAP sing 354 n n O5D C5D NAP sing 355 n n C5D C4D NAP sing 356 n n C5D H51N NAP sing 357 n n C5D H52N NAP sing 358 n n C4D O4D NAP sing 359 n n C4D C3D NAP sing 360 n n C4D H4D NAP sing 361 n n O4D C1D NAP sing 362 n n C3D O3D NAP sing 363 n n C3D C2D NAP sing 364 n n C3D H3D NAP sing 365 n n O3D HO3N NAP sing 366 n n C2D O2D NAP sing 367 n n C2D C1D NAP sing 368 n n C2D H2D NAP sing 369 n n O2D HO2N NAP sing 370 n n C1D N1N NAP sing 371 n n C1D H1D NAP sing 372 n n N1N C2N NAP sing 373 n y N1N C6N NAP doub 374 n y C2N C3N NAP doub 375 n y C2N H2N NAP sing 376 n n C3N C7N NAP sing 377 n n C3N C4N NAP sing 378 n y C7N O7N NAP doub 379 n n C7N N7N NAP sing 380 n n N7N H71N NAP sing 381 n n N7N H72N NAP sing 382 n n C4N C5N NAP doub 383 n y C4N H4N NAP sing 384 n n C5N C6N NAP sing 385 n y C5N H5N NAP sing 386 n n C6N H6N NAP sing 387 n n P2B O1X NAP doub 388 n n P2B O2X NAP sing 389 n n P2B O3X NAP sing 390 n n O2X HOP2 NAP sing 391 n n O3X HOP3 NAP sing 392 n n # _atom_sites.entry_id 4FGH _atom_sites.fract_transf_matrix[1][1] 0.012671 _atom_sites.fract_transf_matrix[1][2] 0.007316 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 0U6 A 1 202 200 0U6 0U6 . D 4 GOL A 1 203 202 GOL GOL . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.691 31.418 -6.216 1 15.28 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 6.786 30.052 -5.492 1 14.32 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 5.329 32.034 -6.016 1 15.33 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 7.718 32.372 -5.524 1 23.69 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 8.901 32.711 -6.184 1 24.34 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 9.887 33.275 -5.212 1 25.26 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 9.702 33.039 -3.749 1 24.78 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 11.361 33.162 -5.461 1 26.27 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 11.903 33.366 -6.703 1 26.5 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 11.848 33.867 -4.272 1 27.57 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 11.685 35.219 -4.269 1 29.17 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 11.109 33.014 -3.262 1 26.04 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 11.508 32.005 -2.331 1 25.62 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 11.185 30.713 -2.441 1 24.06 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 11.908 30.002 -1.43 1 24.83 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 12.692 30.925 -0.729 1 26.62 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 13.578 30.783 0.354 1 27.76 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 13.811 29.498 0.942 1 27.36 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 14.199 31.854 0.837 1 30.02 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 13.983 33.096 0.289 1 30.52 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 13.102 33.242 -0.781 1 29.06 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 12.477 32.16 -1.263 1 27.21 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 7.073 31.305 -7.766 1 14.4 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 6.8 30.025 -8.688 1 19.45 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 7.493 30.281 -10.07 1 29.48 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 7.392 28.807 -8.035 1 19.02 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 5.242 29.792 -8.928 1 25.52 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 4.522 30.642 -9.782 1 26.06 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 3.095 30.26 -10.135 1 25.65 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 2.229 29.584 -9.151 1 24.57 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 2.196 31.207 -10.933 1 26.62 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 2.236 31.165 -12.311 1 27.72 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 0.876 31.271 -10.232 1 25.91 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -0.275 31.609 -10.901 1 26.56 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 0.855 30.049 -9.35 1 24.42 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -0.093 29.755 -8.32 1 23.35 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -1.289 28.937 -8.38 1 22.28 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -1.732 28.21 -7.11 1 21.2 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -2.924 27.347 -7.2 1 20.24 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -3.452 26.958 -6.171 1 20.03 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -3.418 26.988 -8.497 1 19.85 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -1.167 28.625 -5.73 1 21.79 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -0.339 29.933 -5.771 1 22.94 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 0.342 30.35 -7.077 1 23.51 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 12.82 36.181 -4.763 1 23.92 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 13.264 35.841 -6.224 1 23.87 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 12.183 37.608 -4.741 1 24.93 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 13.983 36.059 -3.795 1 25.25 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #