data_4FGH # _model_server_result.job_id gIBxHAwk7CyeSn-FZVsfig _model_server_result.datetime_utc '2025-08-01 21:10:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4FGH # _exptl.entry_id 4FGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.629 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-{5-[(2,4-diamino-6-ethylpyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-1-(2-methylprop-1-en-1-yl)phthalazin-2(1H)-yl]prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FGH _cell.length_a 78.921 _cell.length_b 78.921 _cell.length_c 106.178 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H34 N6 O3' _chem_comp.formula_weight 526.629 _chem_comp.id 0U6 _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-{5-[(2,4-diamino-6-ethylpyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-1-(2-methylprop-1-en-1-yl)phthalazin-2(1H)-yl]prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 HN01 0U6 sing 1 n n N01 HN0A 0U6 sing 2 n n C02 N01 0U6 sing 3 n n C02 N36 0U6 sing 4 n y C03 C02 0U6 doub 5 n y C04 C03 0U6 sing 6 n n C04 H04 0U6 sing 7 n n C04 H04A 0U6 sing 8 n n C05 C04 0U6 sing 9 n n C05 C31 0U6 sing 10 n y C06 C05 0U6 doub 11 n y C06 H06 0U6 sing 12 n n C07 C06 0U6 sing 13 n y C07 C10 0U6 doub 14 n y O08 C07 0U6 sing 15 n n C09 O08 0U6 sing 16 n n C09 H09 0U6 sing 17 n n C09 H09A 0U6 sing 18 n n C09 H09B 0U6 sing 19 n n C10 C13 0U6 sing 20 n y O11 C10 0U6 sing 21 n n C12 O11 0U6 sing 22 n n C12 H12 0U6 sing 23 n n C12 H12A 0U6 sing 24 n n C12 H12B 0U6 sing 25 n n C13 C14 0U6 sing 26 n n C13 C31 0U6 doub 27 n y C14 C15 0U6 doub 28 e n C14 H14 0U6 sing 29 n n C15 C16 0U6 sing 30 n n C15 H15 0U6 sing 31 n n C16 N17 0U6 sing 32 n n N17 C20 0U6 sing 33 n n N17 N18 0U6 sing 34 n n N18 C19 0U6 doub 35 n n C19 C25 0U6 sing 36 n n C20 C24 0U6 sing 37 n n C20 H20 0U6 sing 38 n n C21 C20 0U6 sing 39 n n C22 C21 0U6 doub 40 n n C22 C37 0U6 sing 41 n n C23 C22 0U6 sing 42 n n C24 C29 0U6 doub 43 n y C24 C25 0U6 sing 44 n y C25 C26 0U6 doub 45 n y C26 C27 0U6 sing 46 n y C26 H26 0U6 sing 47 n n C27 H27 0U6 sing 48 n n C28 C27 0U6 doub 49 n y C28 H28 0U6 sing 50 n n C29 C28 0U6 sing 51 n y C29 H29 0U6 sing 52 n n O30 C16 0U6 doub 53 n n C31 H31 0U6 sing 54 n n C32 C03 0U6 sing 55 n y C32 N33 0U6 doub 56 n y N33 C34 0U6 sing 57 n y C34 N35 0U6 sing 58 n n C34 N36 0U6 doub 59 n y N35 HN35 0U6 sing 60 n n N35 HN3A 0U6 sing 61 n n C37 H37 0U6 sing 62 n n C37 H37A 0U6 sing 63 n n C37 H37B 0U6 sing 64 n n C38 C32 0U6 sing 65 n n C38 C39 0U6 sing 66 n n C38 H38 0U6 sing 67 n n C38 H38A 0U6 sing 68 n n C39 H39 0U6 sing 69 n n C39 H39A 0U6 sing 70 n n C39 H39B 0U6 sing 71 n n C21 H21 0U6 sing 72 n n C23 H23 0U6 sing 73 n n C23 H23A 0U6 sing 74 n n C23 H33 0U6 sing 75 n n C19 H19 0U6 sing 76 n n # _atom_sites.entry_id 4FGH _atom_sites.fract_transf_matrix[1][1] 0.012671 _atom_sites.fract_transf_matrix[1][2] 0.007316 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 0U6 A 1 202 200 0U6 0U6 . D 4 GOL A 1 203 202 GOL GOL . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 0U6 . . . C 3 -3.323 28.604 -2.847 1 16.01 ? N01 0U6 202 A 1 HETATM 2 C C02 0U6 . . . C 3 -4.468 28.625 -3.7 1 16.25 ? C02 0U6 202 A 1 HETATM 3 C C03 0U6 . . . C 3 -4.677 29.645 -4.647 1 17.32 ? C03 0U6 202 A 1 HETATM 4 C C04 0U6 . . . C 3 -3.647 30.755 -4.747 1 18.39 ? C04 0U6 202 A 1 HETATM 5 C C05 0U6 . . . C 3 -4.058 31.95 -5.561 1 19.73 ? C05 0U6 202 A 1 HETATM 6 C C06 0U6 . . . C 3 -3.315 32.256 -6.66 1 19.96 ? C06 0U6 202 A 1 HETATM 7 C C07 0U6 . . . C 3 -3.659 33.362 -7.454 1 21.54 ? C07 0U6 202 A 1 HETATM 8 O O08 0U6 . . . C 3 -2.911 33.692 -8.613 1 22.43 ? O08 0U6 202 A 1 HETATM 9 C C09 0U6 . . . C 3 -1.669 33.052 -8.884 1 21.82 ? C09 0U6 202 A 1 HETATM 10 C C10 0U6 . . . C 3 -4.779 34.149 -7.093 1 22.62 ? C10 0U6 202 A 1 HETATM 11 O O11 0U6 . . . C 3 -5.147 35.277 -7.901 1 24.64 ? O11 0U6 202 A 1 HETATM 12 C C12 0U6 . . . C 3 -6.27 35.195 -8.719 1 25.08 ? C12 0U6 202 A 1 HETATM 13 C C13 0U6 . . . C 3 -5.529 33.848 -5.985 1 22.11 ? C13 0U6 202 A 1 HETATM 14 C C14 0U6 . . . C 3 -6.778 34.79 -5.658 1 43.13 ? C14 0U6 202 A 1 HETATM 15 C C15 0U6 . . . C 3 -7.129 35.147 -4.388 1 44 ? C15 0U6 202 A 1 HETATM 16 C C16 0U6 . . . C 3 -8.394 35.997 -4.212 1 46.03 ? C16 0U6 202 A 1 HETATM 17 N N17 0U6 . . . C 3 -9.241 35.861 -3.064 1 46.76 ? N17 0U6 202 A 1 HETATM 18 N N18 0U6 . . . C 3 -8.959 34.984 -2.054 1 45.64 ? N18 0U6 202 A 1 HETATM 19 C C19 0U6 . . . C 3 -8.948 35.56 -0.737 1 46.77 ? C19 0U6 202 A 1 HETATM 20 C C20 0U6 . . . C 3 -10.419 36.689 -2.961 1 48.82 ? C20 0U6 202 A 1 HETATM 21 C C21 0U6 . . . C 3 -11.666 35.857 -3.285 1 48.45 ? C21 0U6 202 A 1 HETATM 22 C C22 0U6 . . . C 3 -12.906 36.51 -3.995 1 44.58 ? C22 0U6 202 A 1 HETATM 23 C C23 0U6 . . . C 3 -12.813 37.168 -5.304 1 49.57 ? C23 0U6 202 A 1 HETATM 24 C C24 0U6 . . . C 3 -10.552 37.314 -1.613 1 50.1 ? C24 0U6 202 A 1 HETATM 25 C C25 0U6 . . . C 3 -9.844 36.776 -0.542 1 49.09 ? C25 0U6 202 A 1 HETATM 26 C C26 0U6 . . . C 3 -9.963 37.399 0.795 1 50.46 ? C26 0U6 202 A 1 HETATM 27 C C27 0U6 . . . C 3 -10.768 38.5 0.979 1 52.87 ? C27 0U6 202 A 1 HETATM 28 C C28 0U6 . . . C 3 -11.493 39.051 -0.123 1 53.87 ? C28 0U6 202 A 1 HETATM 29 C C29 0U6 . . . C 3 -11.382 38.457 -1.423 1 52.48 ? C29 0U6 202 A 1 HETATM 30 O O30 0U6 . . . C 3 -8.675 36.779 -5.07 1 47.11 ? O30 0U6 202 A 1 HETATM 31 C C31 0U6 . . . C 3 -5.196 32.754 -5.188 1 20.7 ? C31 0U6 202 A 1 HETATM 32 C C32 0U6 . . . C 3 -5.904 29.51 -5.469 1 17.34 ? C32 0U6 202 A 1 HETATM 33 N N33 0U6 . . . C 3 -6.742 28.471 -5.26 1 16.84 ? N33 0U6 202 A 1 HETATM 34 C C34 0U6 . . . C 3 -6.492 27.547 -4.345 1 15.88 ? C34 0U6 202 A 1 HETATM 35 N N35 0U6 . . . C 3 -7.421 26.48 -4.179 1 15.51 ? N35 0U6 202 A 1 HETATM 36 N N36 0U6 . . . C 3 -5.357 27.606 -3.557 1 15.8 ? N36 0U6 202 A 1 HETATM 37 C C37 0U6 . . . C 3 -14.187 36.185 -3.35 1 45.44 ? C37 0U6 202 A 1 HETATM 38 C C38 0U6 . . . C 3 -6.377 30.46 -6.536 1 18.24 ? C38 0U6 202 A 1 HETATM 39 C C39 0U6 . . . C 3 -7.867 30.98 -6.329 1 20.94 ? C39 0U6 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #