data_4FGU # _model_server_result.job_id PF6LhsUUePZoISkB0-Q5WA _model_server_result.datetime_utc '2024-11-26 01:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4FGU # _exptl.entry_id 4FGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FGU _cell.length_a 185.1 _cell.length_b 185.1 _cell.length_c 173.07 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 A,C,E,G 3 1 B,D,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 440 NAG 2 n C NAG 2 C 2 NAG A 441 NAG 2 n D NAG 1 D 1 NAG B 440 NAG 2 n D NAG 2 D 2 NAG B 441 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 366 A CYS 378 1_555 A SG CYS 400 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 A SG CYS 378 A CYS 390 1_555 A SG CYS 417 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? disulf ? disulf3 B SG CYS 366 B CYS 378 1_555 B SG CYS 400 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 B SG CYS 378 B CYS 390 1_555 B SG CYS 417 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? covale ? covale1 A ND2 ASN 155 A ASN 167 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 251 A ASN 263 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale3 B ND2 ASN 155 B ASN 167 1_555 F C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale4 B ND2 ASN 251 B ASN 263 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4FGU _atom_sites.fract_transf_matrix[1][1] 0.005402 _atom_sites.fract_transf_matrix[1][2] 0.003119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 503 442 NAG NAG . F 3 NAG B 1 503 442 NAG NAG . G 4 HOH A 1 601 450 HOH HOH . G 4 HOH A 2 602 451 HOH HOH . G 4 HOH A 3 603 452 HOH HOH . G 4 HOH A 4 604 453 HOH HOH . G 4 HOH A 5 605 454 HOH HOH . G 4 HOH A 6 606 455 HOH HOH . G 4 HOH A 7 607 456 HOH HOH . G 4 HOH A 8 608 457 HOH HOH . G 4 HOH A 9 609 458 HOH HOH . G 4 HOH A 10 610 459 HOH HOH . G 4 HOH A 11 611 460 HOH HOH . G 4 HOH A 12 612 461 HOH HOH . G 4 HOH A 13 613 462 HOH HOH . G 4 HOH A 14 614 463 HOH HOH . G 4 HOH A 15 615 464 HOH HOH . G 4 HOH A 16 616 465 HOH HOH . G 4 HOH A 17 617 466 HOH HOH . G 4 HOH A 18 618 467 HOH HOH . G 4 HOH A 19 619 468 HOH HOH . G 4 HOH A 20 620 469 HOH HOH . G 4 HOH A 21 621 470 HOH HOH . G 4 HOH A 22 622 471 HOH HOH . G 4 HOH A 23 623 472 HOH HOH . G 4 HOH A 24 624 473 HOH HOH . G 4 HOH A 25 625 474 HOH HOH . G 4 HOH A 26 626 475 HOH HOH . G 4 HOH A 27 627 476 HOH HOH . G 4 HOH A 28 628 477 HOH HOH . G 4 HOH A 29 629 478 HOH HOH . G 4 HOH A 30 630 479 HOH HOH . G 4 HOH A 31 631 480 HOH HOH . G 4 HOH A 32 632 481 HOH HOH . H 4 HOH B 1 601 450 HOH HOH . H 4 HOH B 2 602 451 HOH HOH . H 4 HOH B 3 603 452 HOH HOH . H 4 HOH B 4 604 453 HOH HOH . H 4 HOH B 5 605 454 HOH HOH . H 4 HOH B 6 606 455 HOH HOH . H 4 HOH B 7 607 456 HOH HOH . H 4 HOH B 8 608 457 HOH HOH . H 4 HOH B 9 609 458 HOH HOH . H 4 HOH B 10 610 459 HOH HOH . H 4 HOH B 11 611 460 HOH HOH . H 4 HOH B 12 612 461 HOH HOH . H 4 HOH B 13 613 462 HOH HOH . H 4 HOH B 14 614 463 HOH HOH . H 4 HOH B 15 615 464 HOH HOH . H 4 HOH B 16 616 465 HOH HOH . H 4 HOH B 17 617 466 HOH HOH . H 4 HOH B 18 618 467 HOH HOH . H 4 HOH B 19 619 468 HOH HOH . H 4 HOH B 20 620 469 HOH HOH . H 4 HOH B 21 621 470 HOH HOH . H 4 HOH B 22 622 471 HOH HOH . H 4 HOH B 23 623 472 HOH HOH . H 4 HOH B 24 624 473 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 35.626 -0.195 35.499 1 29.4 ? C1 NAG 503 A 1 HETATM 2 C C2 NAG . . . E 3 36.995 -0.816 35.787 1 29.44 ? C2 NAG 503 A 1 HETATM 3 C C3 NAG . . . E 3 38.127 0.068 35.264 1 29.35 ? C3 NAG 503 A 1 HETATM 4 C C4 NAG . . . E 3 37.895 0.42 33.797 1 29.49 ? C4 NAG 503 A 1 HETATM 5 C C5 NAG . . . E 3 36.525 1.093 33.67 1 29.48 ? C5 NAG 503 A 1 HETATM 6 C C6 NAG . . . E 3 36.219 1.534 32.238 1 29.42 ? C6 NAG 503 A 1 HETATM 7 C C7 NAG . . . E 3 37.099 -2.266 37.747 1 29.98 ? C7 NAG 503 A 1 HETATM 8 C C8 NAG . . . E 3 37.305 -2.358 39.222 1 30.4 ? C8 NAG 503 A 1 HETATM 9 N N2 NAG . . . E 3 37.168 -1.046 37.212 1 29.79 ? N2 NAG 503 A 1 HETATM 10 O O3 NAG . . . E 3 39.367 -0.586 35.416 1 29.91 ? O3 NAG 503 A 1 HETATM 11 O O4 NAG . . . E 3 38.926 1.268 33.335 1 29.66 ? O4 NAG 503 A 1 HETATM 12 O O5 NAG . . . E 3 35.521 0.204 34.136 1 29.49 ? O5 NAG 503 A 1 HETATM 13 O O6 NAG . . . E 3 35.797 0.437 31.457 1 29.82 ? O6 NAG 503 A 1 HETATM 14 O O7 NAG . . . E 3 36.882 -3.292 37.103 1 30.08 ? O7 NAG 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #