data_4FGZ
#
_model_server_result.job_id            -WP2gkk3KeZVuqJeKAPDzw 
_model_server_result.datetime_utc      '2024-11-24 08:29:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":303}' 
#
_entry.id    4FGZ 
#
_exptl.entry_id    4FGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.008 
_cell.angle_gamma         90 
_cell.entry_id            4FGZ 
_cell.length_a            66.051 
_cell.length_b            60.639 
_cell.length_c            68.151 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 330 n n 
N HN1 SAH sing 331 n n 
N HN2 SAH sing 332 n n 
CA CB SAH sing 333 n n 
CA C SAH sing 334 n n 
CA HA SAH sing 335 n n 
CB CG SAH sing 336 n n 
CB HB1 SAH sing 337 n n 
CB HB2 SAH sing 338 n n 
CG SD SAH sing 339 n n 
CG HG1 SAH sing 340 n n 
CG HG2 SAH sing 341 n n 
SD C5' SAH sing 342 n n 
C O SAH doub 343 n n 
C OXT SAH sing 344 n n 
OXT HXT SAH sing 345 n n 
C5' C4' SAH sing 346 n n 
C5' "H5'1" SAH sing 347 n n 
C5' "H5'2" SAH sing 348 n n 
C4' O4' SAH sing 349 n n 
C4' C3' SAH sing 350 n n 
C4' H4' SAH sing 351 n n 
O4' C1' SAH sing 352 n n 
C3' O3' SAH sing 353 n n 
C3' C2' SAH sing 354 n n 
C3' H3' SAH sing 355 n n 
O3' HO3' SAH sing 356 n n 
C2' O2' SAH sing 357 n n 
C2' C1' SAH sing 358 n n 
C2' H2' SAH sing 359 n n 
O2' HO2' SAH sing 360 n n 
C1' N9 SAH sing 361 n n 
C1' H1' SAH sing 362 n n 
N9 C8 SAH sing 363 n y 
N9 C4 SAH sing 364 n y 
C8 N7 SAH doub 365 n y 
C8 H8 SAH sing 366 n n 
N7 C5 SAH sing 367 n y 
C5 C6 SAH sing 368 n y 
C5 C4 SAH doub 369 n y 
C6 N6 SAH sing 370 n n 
C6 N1 SAH doub 371 n y 
N6 HN61 SAH sing 372 n n 
N6 HN62 SAH sing 373 n n 
N1 C2 SAH sing 374 n y 
C2 N3 SAH doub 375 n y 
C2 H2 SAH sing 376 n n 
N3 C4 SAH sing 377 n y 
#
_atom_sites.entry_id                     4FGZ 
_atom_sites.fract_transf_matrix[1][1]    0.01514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014673 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CQA A 1 301 301 CQA CQA . 
D 2 CQA A 1 302 302 CQA CQA . 
E 3 SAH A 1 303 303 SAH SAH . 
F 4 PO4 A 1 304 304 PO4 PO4 . 
G 2 CQA B 1 301 301 CQA CQA . 
H 2 CQA B 1 302 302 CQA CQA . 
I 3 SAH B 1 303 303 SAH SAH . 
J 4 PO4 B 1 304 304 PO4 PO4 . 
K 5 HOH A 1 401 2 HOH HOH . 
K 5 HOH A 2 402 4 HOH HOH . 
K 5 HOH A 3 403 6 HOH HOH . 
K 5 HOH A 4 404 7 HOH HOH . 
K 5 HOH A 5 405 9 HOH HOH . 
K 5 HOH A 6 406 10 HOH HOH . 
K 5 HOH A 7 407 19 HOH HOH . 
K 5 HOH A 8 408 20 HOH HOH . 
K 5 HOH A 9 409 21 HOH HOH . 
K 5 HOH A 10 410 24 HOH HOH . 
K 5 HOH A 11 411 26 HOH HOH . 
K 5 HOH A 12 412 27 HOH HOH . 
K 5 HOH A 13 413 28 HOH HOH . 
K 5 HOH A 14 414 30 HOH HOH . 
K 5 HOH A 15 415 31 HOH HOH . 
K 5 HOH A 16 416 35 HOH HOH . 
K 5 HOH A 17 417 37 HOH HOH . 
K 5 HOH A 18 418 39 HOH HOH . 
K 5 HOH A 19 419 40 HOH HOH . 
K 5 HOH A 20 420 41 HOH HOH . 
K 5 HOH A 21 421 42 HOH HOH . 
K 5 HOH A 22 422 43 HOH HOH . 
K 5 HOH A 23 423 45 HOH HOH . 
K 5 HOH A 24 424 47 HOH HOH . 
K 5 HOH A 25 425 48 HOH HOH . 
K 5 HOH A 26 426 51 HOH HOH . 
K 5 HOH A 27 427 53 HOH HOH . 
K 5 HOH A 28 428 55 HOH HOH . 
K 5 HOH A 29 429 58 HOH HOH . 
K 5 HOH A 30 430 60 HOH HOH . 
K 5 HOH A 31 431 61 HOH HOH . 
K 5 HOH A 32 432 64 HOH HOH . 
K 5 HOH A 33 433 65 HOH HOH . 
K 5 HOH A 34 434 66 HOH HOH . 
K 5 HOH A 35 435 69 HOH HOH . 
K 5 HOH A 36 436 70 HOH HOH . 
K 5 HOH A 37 437 71 HOH HOH . 
K 5 HOH A 38 438 72 HOH HOH . 
K 5 HOH A 39 439 73 HOH HOH . 
K 5 HOH A 40 440 76 HOH HOH . 
K 5 HOH A 41 441 79 HOH HOH . 
K 5 HOH A 42 442 81 HOH HOH . 
K 5 HOH A 43 443 83 HOH HOH . 
K 5 HOH A 44 444 86 HOH HOH . 
K 5 HOH A 45 445 88 HOH HOH . 
K 5 HOH A 46 446 90 HOH HOH . 
K 5 HOH A 47 447 93 HOH HOH . 
K 5 HOH A 48 448 94 HOH HOH . 
K 5 HOH A 49 449 96 HOH HOH . 
K 5 HOH A 50 450 102 HOH HOH . 
K 5 HOH A 51 451 103 HOH HOH . 
K 5 HOH A 52 452 104 HOH HOH . 
K 5 HOH A 53 453 106 HOH HOH . 
K 5 HOH A 54 454 107 HOH HOH . 
K 5 HOH A 55 455 108 HOH HOH . 
K 5 HOH A 56 456 110 HOH HOH . 
K 5 HOH A 57 457 111 HOH HOH . 
K 5 HOH A 58 458 113 HOH HOH . 
K 5 HOH A 59 459 114 HOH HOH . 
K 5 HOH A 60 460 115 HOH HOH . 
K 5 HOH A 61 461 116 HOH HOH . 
K 5 HOH A 62 462 117 HOH HOH . 
K 5 HOH A 63 463 120 HOH HOH . 
K 5 HOH A 64 464 123 HOH HOH . 
K 5 HOH A 65 465 124 HOH HOH . 
K 5 HOH A 66 466 125 HOH HOH . 
K 5 HOH A 67 467 127 HOH HOH . 
K 5 HOH A 68 468 130 HOH HOH . 
K 5 HOH A 69 469 132 HOH HOH . 
K 5 HOH A 70 470 133 HOH HOH . 
K 5 HOH A 71 471 135 HOH HOH . 
K 5 HOH A 72 472 136 HOH HOH . 
K 5 HOH A 73 473 142 HOH HOH . 
K 5 HOH A 74 474 143 HOH HOH . 
K 5 HOH A 75 475 144 HOH HOH . 
K 5 HOH A 76 476 146 HOH HOH . 
K 5 HOH A 77 477 151 HOH HOH . 
K 5 HOH A 78 478 152 HOH HOH . 
K 5 HOH A 79 479 153 HOH HOH . 
K 5 HOH A 80 480 157 HOH HOH . 
K 5 HOH A 81 481 158 HOH HOH . 
K 5 HOH A 82 482 161 HOH HOH . 
K 5 HOH A 83 483 163 HOH HOH . 
K 5 HOH A 84 484 164 HOH HOH . 
K 5 HOH A 85 485 165 HOH HOH . 
K 5 HOH A 86 486 169 HOH HOH . 
K 5 HOH A 87 487 170 HOH HOH . 
K 5 HOH A 88 488 171 HOH HOH . 
K 5 HOH A 89 489 172 HOH HOH . 
K 5 HOH A 90 490 174 HOH HOH . 
K 5 HOH A 91 491 176 HOH HOH . 
K 5 HOH A 92 492 177 HOH HOH . 
K 5 HOH A 93 493 178 HOH HOH . 
K 5 HOH A 94 494 183 HOH HOH . 
K 5 HOH A 95 495 184 HOH HOH . 
K 5 HOH A 96 496 185 HOH HOH . 
K 5 HOH A 97 497 186 HOH HOH . 
K 5 HOH A 98 498 190 HOH HOH . 
K 5 HOH A 99 499 191 HOH HOH . 
L 5 HOH B 1 401 1 HOH HOH . 
L 5 HOH B 2 402 3 HOH HOH . 
L 5 HOH B 3 403 5 HOH HOH . 
L 5 HOH B 4 404 8 HOH HOH . 
L 5 HOH B 5 405 11 HOH HOH . 
L 5 HOH B 6 406 12 HOH HOH . 
L 5 HOH B 7 407 13 HOH HOH . 
L 5 HOH B 8 408 14 HOH HOH . 
L 5 HOH B 9 409 15 HOH HOH . 
L 5 HOH B 10 410 16 HOH HOH . 
L 5 HOH B 11 411 17 HOH HOH . 
L 5 HOH B 12 412 18 HOH HOH . 
L 5 HOH B 13 413 22 HOH HOH . 
L 5 HOH B 14 414 23 HOH HOH . 
L 5 HOH B 15 415 25 HOH HOH . 
L 5 HOH B 16 416 29 HOH HOH . 
L 5 HOH B 17 417 32 HOH HOH . 
L 5 HOH B 18 418 33 HOH HOH . 
L 5 HOH B 19 419 34 HOH HOH . 
L 5 HOH B 20 420 36 HOH HOH . 
L 5 HOH B 21 421 38 HOH HOH . 
L 5 HOH B 22 422 44 HOH HOH . 
L 5 HOH B 23 423 46 HOH HOH . 
L 5 HOH B 24 424 49 HOH HOH . 
L 5 HOH B 25 425 50 HOH HOH . 
L 5 HOH B 26 426 52 HOH HOH . 
L 5 HOH B 27 427 54 HOH HOH . 
L 5 HOH B 28 428 56 HOH HOH . 
L 5 HOH B 29 429 57 HOH HOH . 
L 5 HOH B 30 430 59 HOH HOH . 
L 5 HOH B 31 431 62 HOH HOH . 
L 5 HOH B 32 432 63 HOH HOH . 
L 5 HOH B 33 433 67 HOH HOH . 
L 5 HOH B 34 434 68 HOH HOH . 
L 5 HOH B 35 435 74 HOH HOH . 
L 5 HOH B 36 436 75 HOH HOH . 
L 5 HOH B 37 437 77 HOH HOH . 
L 5 HOH B 38 438 78 HOH HOH . 
L 5 HOH B 39 439 80 HOH HOH . 
L 5 HOH B 40 440 82 HOH HOH . 
L 5 HOH B 41 441 84 HOH HOH . 
L 5 HOH B 42 442 85 HOH HOH . 
L 5 HOH B 43 443 87 HOH HOH . 
L 5 HOH B 44 444 89 HOH HOH . 
L 5 HOH B 45 445 91 HOH HOH . 
L 5 HOH B 46 446 92 HOH HOH . 
L 5 HOH B 47 447 95 HOH HOH . 
L 5 HOH B 48 448 97 HOH HOH . 
L 5 HOH B 49 449 98 HOH HOH . 
L 5 HOH B 50 450 99 HOH HOH . 
L 5 HOH B 51 451 100 HOH HOH . 
L 5 HOH B 52 452 101 HOH HOH . 
L 5 HOH B 53 453 105 HOH HOH . 
L 5 HOH B 54 454 109 HOH HOH . 
L 5 HOH B 55 455 112 HOH HOH . 
L 5 HOH B 56 456 118 HOH HOH . 
L 5 HOH B 57 457 119 HOH HOH . 
L 5 HOH B 58 458 121 HOH HOH . 
L 5 HOH B 59 459 122 HOH HOH . 
L 5 HOH B 60 460 126 HOH HOH . 
L 5 HOH B 61 461 128 HOH HOH . 
L 5 HOH B 62 462 129 HOH HOH . 
L 5 HOH B 63 463 131 HOH HOH . 
L 5 HOH B 64 464 134 HOH HOH . 
L 5 HOH B 65 465 137 HOH HOH . 
L 5 HOH B 66 466 138 HOH HOH . 
L 5 HOH B 67 467 139 HOH HOH . 
L 5 HOH B 68 468 140 HOH HOH . 
L 5 HOH B 69 469 141 HOH HOH . 
L 5 HOH B 70 470 145 HOH HOH . 
L 5 HOH B 71 471 147 HOH HOH . 
L 5 HOH B 72 472 148 HOH HOH . 
L 5 HOH B 73 473 149 HOH HOH . 
L 5 HOH B 74 474 150 HOH HOH . 
L 5 HOH B 75 475 154 HOH HOH . 
L 5 HOH B 76 476 155 HOH HOH . 
L 5 HOH B 77 477 156 HOH HOH . 
L 5 HOH B 78 478 159 HOH HOH . 
L 5 HOH B 79 479 160 HOH HOH . 
L 5 HOH B 80 480 162 HOH HOH . 
L 5 HOH B 81 481 166 HOH HOH . 
L 5 HOH B 82 482 167 HOH HOH . 
L 5 HOH B 83 483 168 HOH HOH . 
L 5 HOH B 84 484 173 HOH HOH . 
L 5 HOH B 85 485 175 HOH HOH . 
L 5 HOH B 86 486 179 HOH HOH . 
L 5 HOH B 87 487 180 HOH HOH . 
L 5 HOH B 88 488 181 HOH HOH . 
L 5 HOH B 89 489 182 HOH HOH . 
L 5 HOH B 90 490 187 HOH HOH . 
L 5 HOH B 91 491 188 HOH HOH . 
L 5 HOH B 92 492 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . I 3 56.922 53.651 17.236 1 28.91 ? N SAH 303 B 1 
HETATM 2 C CA SAH . . . I 3 57.166 52.244 17.637 1 35.2 ? CA SAH 303 B 1 
HETATM 3 C CB SAH . . . I 3 55.799 51.543 18.004 1 32.93 ? CB SAH 303 B 1 
HETATM 4 C CG SAH . . . I 3 54.891 51.258 16.798 1 34.58 ? CG SAH 303 B 1 
HETATM 5 S SD SAH . . . I 3 53.256 50.581 17.217 1 35.31 ? SD SAH 303 B 1 
HETATM 6 C C SAH . . . I 3 57.931 51.515 16.602 1 42.06 ? C SAH 303 B 1 
HETATM 7 O O SAH . . . I 3 58.047 52.009 15.483 1 35.38 ? O SAH 303 B 1 
HETATM 8 O OXT SAH . . . I 3 58.252 50.359 16.818 1 30.45 ? OXT SAH 303 B 1 
HETATM 9 C C5' SAH . . . I 3 52.272 51.948 17.888 1 38.9 ? C5' SAH 303 B 1 
HETATM 10 C C4' SAH . . . I 3 52.447 52.304 19.256 1 38.09 ? C4' SAH 303 B 1 
HETATM 11 O O4' SAH . . . I 3 51.658 53.494 19.526 1 38.46 ? O4' SAH 303 B 1 
HETATM 12 C C3' SAH . . . I 3 51.914 51.226 20.117 1 35.69 ? C3' SAH 303 B 1 
HETATM 13 O O3' SAH . . . I 3 52.962 50.738 20.936 1 37.93 ? O3' SAH 303 B 1 
HETATM 14 C C2' SAH . . . I 3 50.808 51.842 20.869 1 36.71 ? C2' SAH 303 B 1 
HETATM 15 O O2' SAH . . . I 3 50.742 51.396 22.201 1 40.39 ? O2' SAH 303 B 1 
HETATM 16 C C1' SAH . . . I 3 51.088 53.304 20.786 1 37.67 ? C1' SAH 303 B 1 
HETATM 17 N N9 SAH . . . I 3 49.878 54.156 21.057 1 41.76 ? N9 SAH 303 B 1 
HETATM 18 C C8 SAH . . . I 3 48.641 54.048 20.512 1 37.85 ? C8 SAH 303 B 1 
HETATM 19 N N7 SAH . . . I 3 47.901 55.032 21.031 1 41.29 ? N7 SAH 303 B 1 
HETATM 20 C C5 SAH . . . I 3 48.639 55.761 21.895 1 43.31 ? C5 SAH 303 B 1 
HETATM 21 C C6 SAH . . . I 3 48.378 56.889 22.712 1 48.69 ? C6 SAH 303 B 1 
HETATM 22 N N6 SAH . . . I 3 47.139 57.484 22.756 1 43.29 ? N6 SAH 303 B 1 
HETATM 23 N N1 SAH . . . I 3 49.369 57.383 23.477 1 51.37 ? N1 SAH 303 B 1 
HETATM 24 C C2 SAH . . . I 3 50.579 56.823 23.461 1 50.35 ? C2 SAH 303 B 1 
HETATM 25 N N3 SAH . . . I 3 50.864 55.741 22.693 1 45.19 ? N3 SAH 303 B 1 
HETATM 26 C C4 SAH . . . I 3 49.924 55.196 21.908 1 43.24 ? C4 SAH 303 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#