data_4FHB # _model_server_result.job_id G27jt16AnL9NNcIL6zKenA _model_server_result.datetime_utc '2025-01-15 09:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fhb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4FHB # _exptl.entry_id 4FHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FHB _cell.length_a 72.889 _cell.length_b 72.889 _cell.length_c 254.273 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 288 n n PA O2A NAP sing 289 n n PA O5B NAP sing 290 n n PA O3 NAP sing 291 n n O2A HOA2 NAP sing 292 n n O5B C5B NAP sing 293 n n C5B C4B NAP sing 294 n n C5B H51A NAP sing 295 n n C5B H52A NAP sing 296 n n C4B O4B NAP sing 297 n n C4B C3B NAP sing 298 n n C4B H4B NAP sing 299 n n O4B C1B NAP sing 300 n n C3B O3B NAP sing 301 n n C3B C2B NAP sing 302 n n C3B H3B NAP sing 303 n n O3B HO3A NAP sing 304 n n C2B O2B NAP sing 305 n n C2B C1B NAP sing 306 n n C2B H2B NAP sing 307 n n O2B P2B NAP sing 308 n n C1B N9A NAP sing 309 n n C1B H1B NAP sing 310 n n N9A C8A NAP sing 311 n y N9A C4A NAP sing 312 n y C8A N7A NAP doub 313 n y C8A H8A NAP sing 314 n n N7A C5A NAP sing 315 n y C5A C6A NAP sing 316 n y C5A C4A NAP doub 317 n y C6A N6A NAP sing 318 n n C6A N1A NAP doub 319 n y N6A H61A NAP sing 320 n n N6A H62A NAP sing 321 n n N1A C2A NAP sing 322 n y C2A N3A NAP doub 323 n y C2A H2A NAP sing 324 n n N3A C4A NAP sing 325 n y O3 PN NAP sing 326 n n PN O1N NAP doub 327 n n PN O2N NAP sing 328 n n PN O5D NAP sing 329 n n O5D C5D NAP sing 330 n n C5D C4D NAP sing 331 n n C5D H51N NAP sing 332 n n C5D H52N NAP sing 333 n n C4D O4D NAP sing 334 n n C4D C3D NAP sing 335 n n C4D H4D NAP sing 336 n n O4D C1D NAP sing 337 n n C3D O3D NAP sing 338 n n C3D C2D NAP sing 339 n n C3D H3D NAP sing 340 n n O3D HO3N NAP sing 341 n n C2D O2D NAP sing 342 n n C2D C1D NAP sing 343 n n C2D H2D NAP sing 344 n n O2D HO2N NAP sing 345 n n C1D N1N NAP sing 346 n n C1D H1D NAP sing 347 n n N1N C2N NAP sing 348 n y N1N C6N NAP doub 349 n y C2N C3N NAP doub 350 n y C2N H2N NAP sing 351 n n C3N C7N NAP sing 352 n n C3N C4N NAP sing 353 n y C7N O7N NAP doub 354 n n C7N N7N NAP sing 355 n n N7N H71N NAP sing 356 n n N7N H72N NAP sing 357 n n C4N C5N NAP doub 358 n y C4N H4N NAP sing 359 n n C5N C6N NAP sing 360 n y C5N H5N NAP sing 361 n n C6N H6N NAP sing 362 n n P2B O1X NAP doub 363 n n P2B O2X NAP sing 364 n n P2B O3X NAP sing 365 n n O2X HOP2 NAP sing 366 n n O3X HOP3 NAP sing 367 n n # _atom_sites.entry_id 4FHB _atom_sites.fract_transf_matrix[1][1] 0.01372 _atom_sites.fract_transf_matrix[1][2] 0.007921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FOL A 1 201 161 FOL FOL . D 4 NAP A 1 202 164 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 4 20.788 -10.318 9.04 1 59.11 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . D 4 21.732 -10.475 7.772 0.83 170.94 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . D 4 19.959 -11.409 9.873 1 53.11 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . D 4 19.757 -10.626 7.857 0.78 60 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . D 4 19.795 -9.83 6.717 0.78 50.32 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . D 4 18.952 -10.134 5.59 1 42.68 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . D 4 17.576 -10.045 5.935 0.3 47.65 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . D 4 19.146 -9.135 4.503 0.68 44.06 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . D 4 20.228 -9.551 3.705 0.84 39.61 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . D 4 17.936 -9.187 3.803 0.85 50.05 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . D 4 17.805 -10.365 3.057 1 53.81 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . D 4 16.956 -9.308 4.946 1 50.44 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . D 4 16.504 -8.072 5.457 1 52.99 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . D 4 16.881 -7.451 6.586 1 53.6 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . D 4 16.167 -6.319 6.71 0.43 49.39 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . D 4 15.331 -6.234 5.653 1 46.06 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . D 4 14.378 -5.318 5.235 0 46.46 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . D 4 14.116 -4.174 5.976 0.84 50.07 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . D 4 13.704 -5.555 4.106 1 43.4 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . D 4 13.914 -6.638 3.346 0 42.1 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . D 4 14.843 -7.534 3.732 1 41.03 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . D 4 15.542 -7.354 4.868 0 46.68 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . D 4 21.992 -11.158 9.557 1 71.34 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . D 4 23.432 -10.495 9.74 0.71 35.6 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . D 4 23.29 -9.011 10.058 1 34.83 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . D 4 24.34 -10.599 8.534 1 33 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . D 4 24.032 -11.358 10.949 0.97 65.9 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . D 4 24.281 -12.731 10.751 0.97 63.36 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . D 4 24.95 -13.429 11.876 0.72 59.15 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . D 4 24.301 -13.103 13.05 0.79 58.82 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . D 4 24.965 -14.924 11.812 1 57.64 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . D 4 26.275 -15.419 11.942 0.89 61.55 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . D 4 24.243 -15.378 12.956 0.72 61.97 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . D 4 24.822 -16.463 13.625 1 65.72 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . D 4 24.419 -14.245 13.889 1 57.23 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . D 4 23.446 -14.122 14.969 0.45 51.87 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . D 4 23.875 -14.097 16.236 0.65 51.52 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . D 4 22.97 -13.958 17.269 1 46.57 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . D 4 23.41 -13.913 18.736 0.89 46.39 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . D 4 22.551 -13.609 19.614 0.85 51.79 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . D 4 24.804 -14.19 19.112 1 43.51 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . D 4 21.636 -13.809 16.963 0.73 45.1 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . D 4 21.208 -13.838 15.645 1 45.51 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . D 4 22.151 -13.999 14.652 1 47.69 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . D 4 17.893 -10.304 1.486 0.71 53.54 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . D 4 17.21 -11.549 0.937 1 50.55 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . D 4 17.202 -9.036 1.009 1 43.99 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . D 4 19.353 -10.245 0.981 1 55.32 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #