data_4FHF
#
_model_server_result.job_id            PN_ASJGVlCCPw2KpdyA-Zg 
_model_server_result.datetime_utc      '2024-11-20 11:39:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fhf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    4FHF 
#
_exptl.entry_id    4FHF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.457 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4FHF 
_cell.length_a            53.2 
_cell.length_b            58.99 
_cell.length_c            131.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FHF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 117 A CYS 90 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 A SG CYS 121 A CYS 94 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 A SG CYS 124 A CYS 97 1_555 B FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc4 B FE2 SF4 . A SF4 401 1_555 C N EEM . A EEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc5 B FE2 SF4 . A SF4 401 1_555 C O EEM . A EEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
#
_chem_comp.formula           'C20 H28 N4 O10' 
_chem_comp.formula_weight    484.457 
_chem_comp.id                0TT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 CI 0TT sing 1 n n 
O6 CL 0TT doub 2 n n 
CI CL 0TT sing 3 n n 
CI CH 0TT sing 4 n n 
CI CJ 0TT sing 5 n n 
CL N4 0TT sing 6 n n 
CH CF 0TT sing 7 n n 
CJ N3 0TT sing 8 n n 
N4 CK 0TT sing 9 n n 
CF CE 0TT doub 10 n n 
CF CG 0TT sing 11 n n 
O4 CG 0TT doub 12 n n 
CE N1 0TT sing 13 n n 
CG N2 0TT sing 14 n n 
N3 CK 0TT sing 15 n n 
N3 C2 0TT sing 16 n n 
CK O5 0TT doub 17 n n 
CM CD 0TT sing 18 n n 
CM CA 0TT sing 19 n n 
N1 CD 0TT sing 20 n n 
N1 CB 0TT sing 21 n n 
N2 CB 0TT sing 22 n n 
C2 O7 0TT sing 23 n n 
C2 C3 0TT sing 24 n n 
CD OB 0TT sing 25 n n 
CA O1 0TT sing 26 n n 
CA C9 0TT sing 27 n n 
CB O3 0TT doub 28 n n 
O7 C5 0TT sing 29 n n 
C3 C4 0TT sing 30 n n 
OB C9 0TT sing 31 n n 
C9 C8 0TT sing 32 n n 
C8 OA 0TT sing 33 n n 
C5 C4 0TT sing 34 n n 
C5 C6 0TT sing 35 n n 
C4 O9 0TT sing 36 n n 
O8 C6 0TT sing 37 n n 
O8 H1 0TT sing 38 n n 
C6 H2 0TT sing 39 n n 
C6 H3 0TT sing 40 n n 
C5 H4 0TT sing 41 n n 
C4 H5 0TT sing 42 n n 
O9 H6 0TT sing 43 n n 
C3 H7 0TT sing 44 n n 
C3 H8 0TT sing 45 n n 
C2 H9 0TT sing 46 n n 
CJ H10 0TT sing 47 n n 
CJ H11 0TT sing 48 n n 
N4 H12 0TT sing 49 n n 
C1 H13 0TT sing 50 n n 
C1 H14 0TT sing 51 n n 
C1 H15 0TT sing 52 n n 
CH H16 0TT sing 53 n n 
CH H17 0TT sing 54 n n 
CE H18 0TT sing 55 n n 
N2 H19 0TT sing 56 n n 
CD H20 0TT sing 57 n n 
CM H21 0TT sing 58 n n 
CM H22 0TT sing 59 n n 
CA H23 0TT sing 60 n n 
O1 H24 0TT sing 61 n n 
C9 H25 0TT sing 62 n n 
C8 H26 0TT sing 63 n n 
C8 H27 0TT sing 64 n n 
OA H28 0TT sing 65 n n 
#
_atom_sites.entry_id                     4FHF 
_atom_sites.fract_transf_matrix[1][1]    0.018797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016952 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 401 1 SF4 FS4 . 
C 3 EEM A 1 402 1 EEM SA2 . 
D 4 SO4 A 1 403 1 SO4 SO4 . 
E 4 SO4 A 1 404 2 SO4 SO4 . 
F 4 SO4 A 1 405 3 SO4 SO4 . 
G 4 SO4 A 1 406 4 SO4 SO4 . 
H 4 SO4 A 1 407 6 SO4 SO4 . 
I 5 POP A 1 408 7 POP POP . 
J 6 0TT A 1 409 1 0TT SP . 
K 7 HOH A 1 501 1 HOH HOH . 
K 7 HOH A 2 502 2 HOH HOH . 
K 7 HOH A 3 503 3 HOH HOH . 
K 7 HOH A 4 504 4 HOH HOH . 
K 7 HOH A 5 505 5 HOH HOH . 
K 7 HOH A 6 506 6 HOH HOH . 
K 7 HOH A 7 507 7 HOH HOH . 
K 7 HOH A 8 508 8 HOH HOH . 
K 7 HOH A 9 509 9 HOH HOH . 
K 7 HOH A 10 510 10 HOH HOH . 
K 7 HOH A 11 511 11 HOH HOH . 
K 7 HOH A 12 512 12 HOH HOH . 
K 7 HOH A 13 513 13 HOH HOH . 
K 7 HOH A 14 514 14 HOH HOH . 
K 7 HOH A 15 515 15 HOH HOH . 
K 7 HOH A 16 516 16 HOH HOH . 
K 7 HOH A 17 517 17 HOH HOH . 
K 7 HOH A 18 518 18 HOH HOH . 
K 7 HOH A 19 519 21 HOH HOH . 
K 7 HOH A 20 520 22 HOH HOH . 
K 7 HOH A 21 521 23 HOH HOH . 
K 7 HOH A 22 522 26 HOH HOH . 
K 7 HOH A 23 523 28 HOH HOH . 
K 7 HOH A 24 524 29 HOH HOH . 
K 7 HOH A 25 525 30 HOH HOH . 
K 7 HOH A 26 526 31 HOH HOH . 
K 7 HOH A 27 527 33 HOH HOH . 
K 7 HOH A 28 528 34 HOH HOH . 
K 7 HOH A 29 529 36 HOH HOH . 
K 7 HOH A 30 530 37 HOH HOH . 
K 7 HOH A 31 531 38 HOH HOH . 
K 7 HOH A 32 532 39 HOH HOH . 
K 7 HOH A 33 533 41 HOH HOH . 
K 7 HOH A 34 534 43 HOH HOH . 
K 7 HOH A 35 535 44 HOH HOH . 
K 7 HOH A 36 536 45 HOH HOH . 
K 7 HOH A 37 537 46 HOH HOH . 
K 7 HOH A 38 538 47 HOH HOH . 
K 7 HOH A 39 539 49 HOH HOH . 
K 7 HOH A 40 540 51 HOH HOH . 
K 7 HOH A 41 541 52 HOH HOH . 
K 7 HOH A 42 542 54 HOH HOH . 
K 7 HOH A 43 543 57 HOH HOH . 
K 7 HOH A 44 544 59 HOH HOH . 
K 7 HOH A 45 545 60 HOH HOH . 
K 7 HOH A 46 546 61 HOH HOH . 
K 7 HOH A 47 547 62 HOH HOH . 
K 7 HOH A 48 548 63 HOH HOH . 
K 7 HOH A 49 549 65 HOH HOH . 
K 7 HOH A 50 550 66 HOH HOH . 
K 7 HOH A 51 551 69 HOH HOH . 
K 7 HOH A 52 552 73 HOH HOH . 
K 7 HOH A 53 553 74 HOH HOH . 
K 7 HOH A 54 554 75 HOH HOH . 
K 7 HOH A 55 555 77 HOH HOH . 
K 7 HOH A 56 556 79 HOH HOH . 
K 7 HOH A 57 557 81 HOH HOH . 
K 7 HOH A 58 558 82 HOH HOH . 
K 7 HOH A 59 559 83 HOH HOH . 
K 7 HOH A 60 560 84 HOH HOH . 
K 7 HOH A 61 561 85 HOH HOH . 
K 7 HOH A 62 562 86 HOH HOH . 
K 7 HOH A 63 563 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O8 0TT . . . J 6 -19.317 4.135 -26.239 1 66.05 ? O8 0TT 409 A 1 
HETATM 2 C C6 0TT . . . J 6 -20.063 3.14 -26.951 1 65.8 ? C6 0TT 409 A 1 
HETATM 3 C C5 0TT . . . J 6 -20.988 2.35 -26.053 1 65.74 ? C5 0TT 409 A 1 
HETATM 4 O O7 0TT . . . J 6 -20.416 2.297 -24.758 1 65.55 ? O7 0TT 409 A 1 
HETATM 5 C C4 0TT . . . J 6 -22.395 2.931 -25.862 1 65.68 ? C4 0TT 409 A 1 
HETATM 6 O O9 0TT . . . J 6 -23.237 2.336 -26.868 1 66.17 ? O9 0TT 409 A 1 
HETATM 7 C C3 0TT . . . J 6 -22.802 2.521 -24.467 1 65.52 ? C3 0TT 409 A 1 
HETATM 8 C C2 0TT . . . J 6 -21.458 2.259 -23.753 1 65.2 ? C2 0TT 409 A 1 
HETATM 9 N N3 0TT . . . J 6 -21.165 3.084 -22.573 1 64.55 ? N3 0TT 409 A 1 
HETATM 10 C CJ 0TT . . . J 6 -21.627 2.618 -21.254 1 64 ? CJ 0TT 409 A 1 
HETATM 11 C CK 0TT . . . J 6 -20.088 3.946 -22.648 1 64.39 ? CK 0TT 409 A 1 
HETATM 12 O O5 0TT . . . J 6 -19.822 4.645 -23.626 1 64.45 ? O5 0TT 409 A 1 
HETATM 13 N N4 0TT . . . J 6 -19.468 4.245 -21.433 1 64.02 ? N4 0TT 409 A 1 
HETATM 14 C CL 0TT . . . J 6 -19.424 3.425 -20.332 1 63.78 ? CL 0TT 409 A 1 
HETATM 15 O O6 0TT . . . J 6 -18.667 3.677 -19.409 1 63.84 ? O6 0TT 409 A 1 
HETATM 16 C CI 0TT . . . J 6 -20.491 2.332 -20.248 1 63.69 ? CI 0TT 409 A 1 
HETATM 17 C C1 0TT . . . J 6 -21.087 2.386 -18.828 1 63.61 ? C1 0TT 409 A 1 
HETATM 18 C CH 0TT . . . J 6 -19.861 0.901 -20.414 1 63.13 ? CH 0TT 409 A 1 
HETATM 19 C CF 0TT . . . J 6 -19.71 0.294 -21.779 1 62.68 ? CF 0TT 409 A 1 
HETATM 20 C CE 0TT . . . J 6 -20.584 -0.629 -22.243 1 62.68 ? CE 0TT 409 A 1 
HETATM 21 C CG 0TT . . . J 6 -18.6 0.692 -22.644 1 62.44 ? CG 0TT 409 A 1 
HETATM 22 O O4 0TT . . . J 6 -17.747 1.511 -22.346 1 61.86 ? O4 0TT 409 A 1 
HETATM 23 N N2 0TT . . . J 6 -18.551 0.075 -23.884 1 62.4 ? N2 0TT 409 A 1 
HETATM 24 C CB 0TT . . . J 6 -19.436 -0.862 -24.362 1 62.48 ? CB 0TT 409 A 1 
HETATM 25 O O3 0TT . . . J 6 -19.285 -1.34 -25.486 1 62.58 ? O3 0TT 409 A 1 
HETATM 26 N N1 0TT . . . J 6 -20.478 -1.218 -23.514 1 62.64 ? N1 0TT 409 A 1 
HETATM 27 C CD 0TT . . . J 6 -21.447 -2.225 -24.019 1 62.78 ? CD 0TT 409 A 1 
HETATM 28 O OB 0TT . . . J 6 -22.051 -1.669 -25.206 1 62.69 ? OB 0TT 409 A 1 
HETATM 29 C CM 0TT . . . J 6 -22.622 -2.54 -23.143 1 62.87 ? CM 0TT 409 A 1 
HETATM 30 C CA 0TT . . . J 6 -23.559 -3.16 -24.179 1 62.88 ? CA 0TT 409 A 1 
HETATM 31 O O1 0TT . . . J 6 -23.246 -4.526 -24.392 1 63.04 ? O1 0TT 409 A 1 
HETATM 32 C C9 0TT . . . J 6 -23.375 -2.229 -25.393 1 62.89 ? C9 0TT 409 A 1 
HETATM 33 C C8 0TT . . . J 6 -24.367 -1.119 -25.575 1 62.89 ? C8 0TT 409 A 1 
HETATM 34 O OA 0TT . . . J 6 -24.244 -0.613 -26.919 1 62.86 ? OA 0TT 409 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           34 
#