data_4FHP # _model_server_result.job_id NyZdmpyjyg2LjptE-XekmQ _model_server_result.datetime_utc '2025-07-09 13:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FHP # _exptl.entry_id 4FHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FHP _cell.length_a 53.49 _cell.length_b 62.37 _cell.length_c 111.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 73 A ASP 101 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc2 A OD2 ASP 75 A ASP 103 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 B O3G UTP . A UTP 401 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 B O1B UTP . A UTP 401 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 B O2A UTP . A UTP 401 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 C CA CA . A CA 402 1_555 E O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc7 C CA CA . A CA 402 1_555 E O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C9 H15 N2 O15 P3' _chem_comp.formula_weight 484.141 _chem_comp.id UTP _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A UTP doub 371 n n PA O2A UTP sing 372 n n PA O3A UTP sing 373 n n PA O5' UTP sing 374 n n O2A H2A UTP sing 375 n n O3A PB UTP sing 376 n n O5' C5' UTP sing 377 n n PB O1B UTP sing 378 n n PB O2B UTP doub 379 n n PB O3B UTP sing 380 n n O1B H1B UTP sing 381 n n O3B PG UTP sing 382 n n PG O1G UTP sing 383 n n PG O2G UTP doub 384 n n PG O3G UTP sing 385 n n O1G H1G UTP sing 386 n n O3G H3G UTP sing 387 n n C5' C4' UTP sing 388 n n C5' "H5'1" UTP sing 389 n n C5' "H5'2" UTP sing 390 n n C4' O4' UTP sing 391 n n C4' C3' UTP sing 392 n n C4' H4' UTP sing 393 n n O4' C1' UTP sing 394 n n C1' C2' UTP sing 395 n n C1' N1 UTP sing 396 n n C1' H1' UTP sing 397 n n C2' O2' UTP sing 398 n n C2' C3' UTP sing 399 n n C2' H2' UTP sing 400 n n O2' HA UTP sing 401 n n C3' O3' UTP sing 402 n n C3' H3' UTP sing 403 n n O3' HB UTP sing 404 n n N1 C6 UTP sing 405 n y N1 C2 UTP sing 406 n y C6 C5 UTP doub 407 n y C6 H6 UTP sing 408 n n C2 O2 UTP doub 409 n n C2 N3 UTP sing 410 n y N3 C4 UTP sing 411 n y N3 H3 UTP sing 412 n n C4 O4 UTP doub 413 n n C4 C5 UTP sing 414 n y C5 H5 UTP sing 415 n n # _atom_sites.entry_id 4FHP _atom_sites.fract_transf_matrix[1][1] 0.018695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UTP A 1 401 1 UTP UTP . C 3 CA A 1 402 1 CA CA . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 41 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 43 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 45 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 49 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 51 HOH HOH . E 5 HOH A 52 552 52 HOH HOH . E 5 HOH A 53 553 53 HOH HOH . E 5 HOH A 54 554 54 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 56 HOH HOH . E 5 HOH A 57 557 57 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 60 HOH HOH . E 5 HOH A 61 561 61 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 63 HOH HOH . E 5 HOH A 64 564 64 HOH HOH . E 5 HOH A 65 565 65 HOH HOH . E 5 HOH A 66 566 66 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . E 5 HOH A 68 568 68 HOH HOH . E 5 HOH A 69 569 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA UTP . . . B 2 -14.389 3.942 -6.2 1 17.02 ? PA UTP 401 A 1 HETATM 2 O O1A UTP . . . B 2 -14.203 5.27 -6.831 1 18.83 ? O1A UTP 401 A 1 HETATM 3 O O2A UTP . . . B 2 -13.896 3.907 -4.808 1 15.77 ? O2A UTP 401 A 1 HETATM 4 O O3A UTP . . . B 2 -13.707 2.811 -7.098 1 18.66 ? O3A UTP 401 A 1 HETATM 5 O O5' UTP . . . B 2 -15.948 3.579 -6.287 1 18.07 ? O5' UTP 401 A 1 HETATM 6 P PB UTP . . . B 2 -12.574 1.824 -6.518 1 21.37 ? PB UTP 401 A 1 HETATM 7 O O1B UTP . . . B 2 -13.123 1.024 -5.397 1 20.68 ? O1B UTP 401 A 1 HETATM 8 O O2B UTP . . . B 2 -12.181 0.898 -7.61 1 22.25 ? O2B UTP 401 A 1 HETATM 9 O O3B UTP . . . B 2 -11.418 2.704 -6.159 1 20.44 ? O3B UTP 401 A 1 HETATM 10 P PG UTP . . . B 2 -10.429 2.557 -4.894 1 19.41 ? PG UTP 401 A 1 HETATM 11 O O1G UTP . . . B 2 -9.716 3.89 -4.785 1 18.86 ? O1G UTP 401 A 1 HETATM 12 O O2G UTP . . . B 2 -9.537 1.407 -5.289 1 21.19 ? O2G UTP 401 A 1 HETATM 13 O O3G UTP . . . B 2 -11.348 2.266 -3.736 1 19.74 ? O3G UTP 401 A 1 HETATM 14 C C5' UTP . . . B 2 -16.375 2.289 -5.904 1 18.76 ? C5' UTP 401 A 1 HETATM 15 C C4' UTP . . . B 2 -17.545 1.811 -6.745 1 19.13 ? C4' UTP 401 A 1 HETATM 16 O O4' UTP . . . B 2 -18.69 2.631 -6.574 1 19.27 ? O4' UTP 401 A 1 HETATM 17 C C1' UTP . . . B 2 -19.417 2.72 -7.783 1 18.02 ? C1' UTP 401 A 1 HETATM 18 C C2' UTP . . . B 2 -18.714 1.802 -8.768 1 19.36 ? C2' UTP 401 A 1 HETATM 19 O O2' UTP . . . B 2 -19.257 0.492 -8.694 1 17.31 ? O2' UTP 401 A 1 HETATM 20 C C3' UTP . . . B 2 -17.295 1.803 -8.244 1 19.88 ? C3' UTP 401 A 1 HETATM 21 O O3' UTP . . . B 2 -16.608 0.652 -8.669 1 21.97 ? O3' UTP 401 A 1 HETATM 22 N N1 UTP . . . B 2 -19.414 4.114 -8.299 1 17.27 ? N1 UTP 401 A 1 HETATM 23 C C6 UTP . . . B 2 -18.615 5.088 -7.743 1 16.31 ? C6 UTP 401 A 1 HETATM 24 C C2 UTP . . . B 2 -20.396 4.5 -9.213 1 16.55 ? C2 UTP 401 A 1 HETATM 25 O O2 UTP . . . B 2 -21.258 3.708 -9.598 1 16.13 ? O2 UTP 401 A 1 HETATM 26 N N3 UTP . . . B 2 -20.424 5.787 -9.705 1 15.62 ? N3 UTP 401 A 1 HETATM 27 C C4 UTP . . . B 2 -19.484 6.71 -9.299 1 17.11 ? C4 UTP 401 A 1 HETATM 28 O O4 UTP . . . B 2 -19.543 7.852 -9.758 1 16.95 ? O4 UTP 401 A 1 HETATM 29 C C5 UTP . . . B 2 -18.502 6.337 -8.375 1 16.44 ? C5 UTP 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 620 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #