data_4FHV # _model_server_result.job_id zcef2tlnA8WdtHvl7ZLhIQ _model_server_result.datetime_utc '2024-10-19 08:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FHV # _exptl.entry_id 4FHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FHV _cell.length_a 53.64 _cell.length_b 62.72 _cell.length_c 111.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 75 A ASP 103 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 B O2B CTP . A CTP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 B O1B CTP . A CTP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 4FHV _atom_sites.fract_transf_matrix[1][1] 0.018643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTP A 1 401 1 CTP CTP . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 31 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 35 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 37 HOH HOH . D 4 HOH A 37 537 38 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 40 HOH HOH . D 4 HOH A 40 540 41 HOH HOH . D 4 HOH A 41 541 42 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 45 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 48 HOH HOH . D 4 HOH A 48 548 49 HOH HOH . D 4 HOH A 49 549 50 HOH HOH . D 4 HOH A 50 550 51 HOH HOH . D 4 HOH A 51 551 52 HOH HOH . D 4 HOH A 52 552 53 HOH HOH . D 4 HOH A 53 553 54 HOH HOH . D 4 HOH A 54 554 55 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 58 HOH HOH . D 4 HOH A 58 558 59 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 61 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 65 HOH HOH . D 4 HOH A 65 565 66 HOH HOH . D 4 HOH A 66 566 67 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 69 HOH HOH . D 4 HOH A 69 569 70 HOH HOH . D 4 HOH A 70 570 71 HOH HOH . D 4 HOH A 71 571 72 HOH HOH . D 4 HOH A 72 572 73 HOH HOH . D 4 HOH A 73 573 74 HOH HOH . D 4 HOH A 74 574 75 HOH HOH . D 4 HOH A 75 575 76 HOH HOH . D 4 HOH A 76 576 77 HOH HOH . D 4 HOH A 77 577 78 HOH HOH . D 4 HOH A 78 578 79 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 81 HOH HOH . D 4 HOH A 81 581 82 HOH HOH . D 4 HOH A 82 582 83 HOH HOH . D 4 HOH A 83 583 84 HOH HOH . D 4 HOH A 84 584 85 HOH HOH . D 4 HOH A 85 585 86 HOH HOH . D 4 HOH A 86 586 87 HOH HOH . D 4 HOH A 87 587 88 HOH HOH . D 4 HOH A 88 588 89 HOH HOH . D 4 HOH A 89 589 90 HOH HOH . D 4 HOH A 90 590 91 HOH HOH . D 4 HOH A 91 591 92 HOH HOH . D 4 HOH A 92 592 93 HOH HOH . D 4 HOH A 93 593 94 HOH HOH . D 4 HOH A 94 594 95 HOH HOH . D 4 HOH A 95 595 96 HOH HOH . D 4 HOH A 96 596 97 HOH HOH . D 4 HOH A 97 597 98 HOH HOH . D 4 HOH A 98 598 99 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 101 HOH HOH . D 4 HOH A 101 601 102 HOH HOH . D 4 HOH A 102 602 104 HOH HOH . D 4 HOH A 103 603 105 HOH HOH . D 4 HOH A 104 604 106 HOH HOH . D 4 HOH A 105 605 107 HOH HOH . D 4 HOH A 106 606 108 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 110 HOH HOH . D 4 HOH A 109 609 111 HOH HOH . D 4 HOH A 110 610 112 HOH HOH . D 4 HOH A 111 611 113 HOH HOH . D 4 HOH A 112 612 115 HOH HOH . D 4 HOH A 113 613 116 HOH HOH . D 4 HOH A 114 614 117 HOH HOH . D 4 HOH A 115 615 118 HOH HOH . D 4 HOH A 116 616 119 HOH HOH . D 4 HOH A 117 617 120 HOH HOH . D 4 HOH A 118 618 121 HOH HOH . D 4 HOH A 119 619 123 HOH HOH . D 4 HOH A 120 620 124 HOH HOH . D 4 HOH A 121 621 125 HOH HOH . D 4 HOH A 122 622 126 HOH HOH . D 4 HOH A 123 623 127 HOH HOH . D 4 HOH A 124 624 128 HOH HOH . D 4 HOH A 125 625 129 HOH HOH . D 4 HOH A 126 626 131 HOH HOH . D 4 HOH A 127 627 132 HOH HOH . D 4 HOH A 128 628 133 HOH HOH . D 4 HOH A 129 629 134 HOH HOH . D 4 HOH A 130 630 135 HOH HOH . D 4 HOH A 131 631 136 HOH HOH . D 4 HOH A 132 632 137 HOH HOH . D 4 HOH A 133 633 138 HOH HOH . D 4 HOH A 134 634 139 HOH HOH . D 4 HOH A 135 635 140 HOH HOH . D 4 HOH A 136 636 141 HOH HOH . D 4 HOH A 137 637 142 HOH HOH . D 4 HOH A 138 638 143 HOH HOH . D 4 HOH A 139 639 144 HOH HOH . D 4 HOH A 140 640 145 HOH HOH . D 4 HOH A 141 641 146 HOH HOH . D 4 HOH A 142 642 147 HOH HOH . D 4 HOH A 143 643 148 HOH HOH . D 4 HOH A 144 644 149 HOH HOH . D 4 HOH A 145 645 150 HOH HOH . D 4 HOH A 146 646 152 HOH HOH . D 4 HOH A 147 647 153 HOH HOH . D 4 HOH A 148 648 154 HOH HOH . D 4 HOH A 149 649 155 HOH HOH . D 4 HOH A 150 650 156 HOH HOH . D 4 HOH A 151 651 157 HOH HOH . D 4 HOH A 152 652 158 HOH HOH . D 4 HOH A 153 653 159 HOH HOH . D 4 HOH A 154 654 160 HOH HOH . D 4 HOH A 155 655 161 HOH HOH . D 4 HOH A 156 656 162 HOH HOH . D 4 HOH A 157 657 163 HOH HOH . D 4 HOH A 158 658 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . B 2 -19.666 4.147 -7.948 1 44.66 ? N1 CTP 401 A 1 HETATM 2 C C2 CTP . . . B 2 -20.638 4.373 -8.923 1 43.77 ? C2 CTP 401 A 1 HETATM 3 N N3 CTP . . . B 2 -20.634 5.566 -9.637 1 42.57 ? N3 CTP 401 A 1 HETATM 4 C C4 CTP . . . B 2 -19.749 6.567 -9.281 1 42.52 ? C4 CTP 401 A 1 HETATM 5 C C5 CTP . . . B 2 -18.753 6.306 -8.348 1 42.94 ? C5 CTP 401 A 1 HETATM 6 C C6 CTP . . . B 2 -18.864 5.184 -7.543 1 43.61 ? C6 CTP 401 A 1 HETATM 7 O O2 CTP . . . B 2 -21.499 3.517 -9.16 1 43.35 ? O2 CTP 401 A 1 HETATM 8 N N4 CTP . . . B 2 -19.834 7.777 -9.816 1 41.37 ? N4 CTP 401 A 1 HETATM 9 C C1' CTP . . . B 2 -19.357 2.767 -7.507 1 44.99 ? C1' CTP 401 A 1 HETATM 10 C C2' CTP . . . B 2 -18.55 2.058 -8.583 1 45.12 ? C2' CTP 401 A 1 HETATM 11 O O2' CTP . . . B 2 -19.095 0.772 -8.768 1 44.58 ? O2' CTP 401 A 1 HETATM 12 C C3' CTP . . . B 2 -17.147 2.003 -8.013 1 45.57 ? C3' CTP 401 A 1 HETATM 13 C C4' CTP . . . B 2 -17.37 2.046 -6.503 1 46.53 ? C4' CTP 401 A 1 HETATM 14 O O4' CTP . . . B 2 -18.577 2.768 -6.322 1 46.08 ? O4' CTP 401 A 1 HETATM 15 O O3' CTP . . . B 2 -16.463 0.843 -8.421 1 44.96 ? O3' CTP 401 A 1 HETATM 16 C C5' CTP . . . B 2 -16.233 2.693 -5.711 1 47.84 ? C5' CTP 401 A 1 HETATM 17 O O5' CTP . . . B 2 -15.89 3.948 -6.253 1 50.41 ? O5' CTP 401 A 1 HETATM 18 P PA CTP . . . B 2 -14.435 4.609 -6.033 1 51.76 ? PA CTP 401 A 1 HETATM 19 O O1A CTP . . . B 2 -14.227 5.728 -7.031 1 51.08 ? O1A CTP 401 A 1 HETATM 20 O O2A CTP . . . B 2 -14.343 5.128 -4.617 1 52.35 ? O2A CTP 401 A 1 HETATM 21 O O3A CTP . . . B 2 -13.37 3.407 -6.251 1 52.85 ? O3A CTP 401 A 1 HETATM 22 P PB CTP . . . B 2 -12.389 2.827 -5.096 1 53.88 ? PB CTP 401 A 1 HETATM 23 O O1B CTP . . . B 2 -11.943 1.452 -5.505 1 53.57 ? O1B CTP 401 A 1 HETATM 24 O O2B CTP . . . B 2 -13.065 2.764 -3.742 1 53.81 ? O2B CTP 401 A 1 HETATM 25 O O3B CTP . . . B 2 -11.117 3.814 -5.071 1 54.65 ? O3B CTP 401 A 1 HETATM 26 P PG CTP . . . B 2 -9.622 3.257 -4.831 1 56.27 ? PG CTP 401 A 1 HETATM 27 O O1G CTP . . . B 2 -9.428 1.928 -5.529 1 55.52 ? O1G CTP 401 A 1 HETATM 28 O O2G CTP . . . B 2 -9.368 3.098 -3.348 1 56.44 ? O2G CTP 401 A 1 HETATM 29 O O3G CTP . . . B 2 -8.629 4.256 -5.383 1 55.51 ? O3G CTP 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #