data_4FHX # _model_server_result.job_id 9vfcGcpHx0Q886hBzPm9Yw _model_server_result.datetime_utc '2024-11-01 08:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FHX # _exptl.entry_id 4FHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FHX _cell.length_a 53.72 _cell.length_b 62.47 _cell.length_c 111.826 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 73 A ASP 101 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A OD2 ASP 75 A ASP 103 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 B O3G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 C MG MG . A MG 402 1_555 D O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4FHX _atom_sites.fract_transf_matrix[1][1] 0.018615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 10 HOH HOH . D 4 HOH A 9 509 11 HOH HOH . D 4 HOH A 10 510 12 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 14 HOH HOH . D 4 HOH A 13 513 17 HOH HOH . D 4 HOH A 14 514 18 HOH HOH . D 4 HOH A 15 515 19 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 21 HOH HOH . D 4 HOH A 18 518 23 HOH HOH . D 4 HOH A 19 519 25 HOH HOH . D 4 HOH A 20 520 26 HOH HOH . D 4 HOH A 21 521 27 HOH HOH . D 4 HOH A 22 522 29 HOH HOH . D 4 HOH A 23 523 31 HOH HOH . D 4 HOH A 24 524 32 HOH HOH . D 4 HOH A 25 525 33 HOH HOH . D 4 HOH A 26 526 34 HOH HOH . D 4 HOH A 27 527 35 HOH HOH . D 4 HOH A 28 528 36 HOH HOH . D 4 HOH A 29 529 37 HOH HOH . D 4 HOH A 30 530 38 HOH HOH . D 4 HOH A 31 531 39 HOH HOH . D 4 HOH A 32 532 40 HOH HOH . D 4 HOH A 33 533 41 HOH HOH . D 4 HOH A 34 534 42 HOH HOH . D 4 HOH A 35 535 43 HOH HOH . D 4 HOH A 36 536 44 HOH HOH . D 4 HOH A 37 537 45 HOH HOH . D 4 HOH A 38 538 46 HOH HOH . D 4 HOH A 39 539 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -11.425 2.604 -4.802 1 81.61 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 -11.654 4.029 -5.245 1 80.61 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 -9.977 2.158 -4.917 1 81.15 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 -12.165 2.217 -3.529 1 78.32 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 -13.764 1.607 -6.009 1 84.09 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 -14.122 0.665 -7.142 1 82.99 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 -14.256 1.334 -4.593 1 80.38 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 -12.154 1.719 -5.936 1 82.52 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 -14.942 4.197 -5.591 1 84.44 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 -14.718 5.557 -6.242 1 82.7 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 -14.557 3.936 -4.137 1 80.88 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 -14.168 3.104 -6.501 1 83.58 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 -16.507 3.784 -5.784 1 85.03 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 -16.988 2.428 -5.733 1 86.38 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 -18.286 2.188 -6.521 1 87.56 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 -19.218 3.265 -6.331 1 88.71 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 -18.104 1.994 -8.028 1 87.34 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 -18.197 0.613 -8.393 1 86.34 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 -19.22 2.804 -8.669 1 87.82 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 -20.311 1.971 -9.082 1 87.11 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 -19.686 3.775 -7.586 1 88.49 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 -19.111 5.132 -7.829 1 88.81 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 -17.916 5.587 -7.382 1 88.83 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 -17.669 6.861 -7.772 1 88.86 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 -18.738 7.246 -8.495 1 88.8 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 -19.136 8.479 -9.209 1 88.41 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 -18.307 9.553 -9.21 1 88.24 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 -20.338 8.481 -9.844 1 88.06 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 -21.158 7.407 -9.84 1 88.04 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 -20.864 6.253 -9.211 1 88.17 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 -19.69 6.113 -8.533 1 88.78 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #