data_4FHY # _model_server_result.job_id r4Rt8Ojy84JPfFoU-O3B8Q _model_server_result.datetime_utc '2024-11-14 05:19:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fhy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4FHY # _exptl.entry_id 4FHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FHY _cell.length_a 53.68 _cell.length_b 62.52 _cell.length_c 111.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 73 A ASP 101 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A OD2 ASP 75 A ASP 103 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 B O2B 3AT . A 3AT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 B O3G 3AT . A 3AT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 B O2A 3AT . A 3AT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id 3AT _chem_comp.mon_nstd_flag . _chem_comp.name "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CORDYCEPIN TRIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G 3AT doub 1 n n PG O2G 3AT sing 2 n n PG O3G 3AT sing 3 n n PG O3B 3AT sing 4 n n O2G HOG2 3AT sing 5 n n O3G HOG3 3AT sing 6 n n PB O1B 3AT doub 7 n n PB O2B 3AT sing 8 n n PB O3B 3AT sing 9 n n PB O3A 3AT sing 10 n n O2B HOB2 3AT sing 11 n n PA O1A 3AT doub 12 n n PA O2A 3AT sing 13 n n PA O3A 3AT sing 14 n n PA O5' 3AT sing 15 n n O2A HOA2 3AT sing 16 n n O5' C5' 3AT sing 17 n n C5' C4' 3AT sing 18 n n C5' "H5'1" 3AT sing 19 n n C5' "H5'2" 3AT sing 20 n n C4' O4' 3AT sing 21 n n C4' C3' 3AT sing 22 n n C4' H4' 3AT sing 23 n n O4' C1' 3AT sing 24 n n C3' C2' 3AT sing 25 n n C3' "H3'1" 3AT sing 26 n n C3' "H3'2" 3AT sing 27 n n C2' O2' 3AT sing 28 n n C2' C1' 3AT sing 29 n n C2' "H2'1" 3AT sing 30 n n O2' HO2' 3AT sing 31 n n C1' N9 3AT sing 32 n n C1' H1' 3AT sing 33 n n N9 C8 3AT sing 34 n y N9 C4 3AT sing 35 n y C8 N7 3AT doub 36 n y C8 H8 3AT sing 37 n n N7 C5 3AT sing 38 n y C5 C6 3AT sing 39 n y C5 C4 3AT doub 40 n y C6 N6 3AT sing 41 n n C6 N1 3AT doub 42 n y N6 HN61 3AT sing 43 n n N6 HN62 3AT sing 44 n n N1 C2 3AT sing 45 n y C2 N3 3AT doub 46 n y C2 H2 3AT sing 47 n n N3 C4 3AT sing 48 n y # _atom_sites.entry_id 4FHY _atom_sites.fract_transf_matrix[1][1] 0.018629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3AT A 1 401 1 3AT 3AT . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 9 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 14 HOH HOH . D 4 HOH A 13 513 15 HOH HOH . D 4 HOH A 14 514 16 HOH HOH . D 4 HOH A 15 515 17 HOH HOH . D 4 HOH A 16 516 18 HOH HOH . D 4 HOH A 17 517 19 HOH HOH . D 4 HOH A 18 518 20 HOH HOH . D 4 HOH A 19 519 21 HOH HOH . D 4 HOH A 20 520 22 HOH HOH . D 4 HOH A 21 521 23 HOH HOH . D 4 HOH A 22 522 24 HOH HOH . D 4 HOH A 23 523 26 HOH HOH . D 4 HOH A 24 524 28 HOH HOH . D 4 HOH A 25 525 29 HOH HOH . D 4 HOH A 26 526 30 HOH HOH . D 4 HOH A 27 527 31 HOH HOH . D 4 HOH A 28 528 33 HOH HOH . D 4 HOH A 29 529 34 HOH HOH . D 4 HOH A 30 530 35 HOH HOH . D 4 HOH A 31 531 37 HOH HOH . D 4 HOH A 32 532 39 HOH HOH . D 4 HOH A 33 533 40 HOH HOH . D 4 HOH A 34 534 41 HOH HOH . D 4 HOH A 35 535 42 HOH HOH . D 4 HOH A 36 536 43 HOH HOH . D 4 HOH A 37 537 44 HOH HOH . D 4 HOH A 38 538 45 HOH HOH . D 4 HOH A 39 539 47 HOH HOH . D 4 HOH A 40 540 48 HOH HOH . D 4 HOH A 41 541 50 HOH HOH . D 4 HOH A 42 542 51 HOH HOH . D 4 HOH A 43 543 52 HOH HOH . D 4 HOH A 44 544 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG 3AT . . . B 2 -10.601 2.804 -4.939 1 44.32 ? PG 3AT 401 A 1 HETATM 2 O O1G 3AT . . . B 2 -9.486 1.827 -4.773 1 43.23 ? O1G 3AT 401 A 1 HETATM 3 O O2G 3AT . . . B 2 -10.103 4.362 -4.756 1 42.62 ? O2G 3AT 401 A 1 HETATM 4 O O3G 3AT . . . B 2 -11.853 2.59 -3.897 1 42.81 ? O3G 3AT 401 A 1 HETATM 5 P PB 3AT . . . B 2 -12.716 2.033 -6.551 1 49.07 ? PB 3AT 401 A 1 HETATM 6 O O1B 3AT . . . B 2 -12.764 0.899 -7.532 1 48.53 ? O1B 3AT 401 A 1 HETATM 7 O O2B 3AT . . . B 2 -13.172 1.57 -5.03 1 46.26 ? O2B 3AT 401 A 1 HETATM 8 O O3B 3AT . . . B 2 -11.238 2.651 -6.378 1 46.17 ? O3B 3AT 401 A 1 HETATM 9 P PA 3AT . . . B 2 -14.585 4.054 -5.981 1 48.61 ? PA 3AT 401 A 1 HETATM 10 O O1A 3AT . . . B 2 -14.538 5.603 -6.52 1 48.64 ? O1A 3AT 401 A 1 HETATM 11 O O2A 3AT . . . B 2 -14.109 3.808 -4.577 1 45.77 ? O2A 3AT 401 A 1 HETATM 12 O O3A 3AT . . . B 2 -13.614 3.306 -7.015 1 48.45 ? O3A 3AT 401 A 1 HETATM 13 O O5' 3AT . . . B 2 -16.112 3.528 -6.266 1 50.15 ? O5' 3AT 401 A 1 HETATM 14 C C5' 3AT . . . B 2 -16.376 2.294 -6.971 1 53.31 ? C5' 3AT 401 A 1 HETATM 15 C C4' 3AT . . . B 2 -17.883 2.062 -7.232 1 54.74 ? C4' 3AT 401 A 1 HETATM 16 O O4' 3AT . . . B 2 -18.74 3.015 -6.524 1 56.15 ? O4' 3AT 401 A 1 HETATM 17 C C3' 3AT . . . B 2 -18.159 2.223 -8.719 1 54.91 ? C3' 3AT 401 A 1 HETATM 18 C C2' 3AT . . . B 2 -19.461 2.99 -8.79 1 55.83 ? C2' 3AT 401 A 1 HETATM 19 O O2' 3AT . . . B 2 -20.574 2.084 -8.821 1 55.35 ? O2' 3AT 401 A 1 HETATM 20 C C1' 3AT . . . B 2 -19.491 3.802 -7.5 1 56.74 ? C1' 3AT 401 A 1 HETATM 21 N N9 3AT . . . B 2 -18.952 5.2 -7.721 1 57.95 ? N9 3AT 401 A 1 HETATM 22 C C8 3AT . . . B 2 -17.765 5.674 -7.329 1 58.73 ? C8 3AT 401 A 1 HETATM 23 N N7 3AT . . . B 2 -17.657 6.946 -7.72 1 59.03 ? N7 3AT 401 A 1 HETATM 24 C C5 3AT . . . B 2 -18.785 7.275 -8.357 1 59.13 ? C5 3AT 401 A 1 HETATM 25 C C6 3AT . . . B 2 -19.181 8.425 -8.93 1 59.26 ? C6 3AT 401 A 1 HETATM 26 N N6 3AT . . . B 2 -18.324 9.455 -8.885 1 58.06 ? N6 3AT 401 A 1 HETATM 27 N N1 3AT . . . B 2 -20.385 8.525 -9.525 1 58.99 ? N1 3AT 401 A 1 HETATM 28 C C2 3AT . . . B 2 -21.244 7.412 -9.544 1 58.94 ? C2 3AT 401 A 1 HETATM 29 N N3 3AT . . . B 2 -20.808 6.233 -8.934 1 58.81 ? N3 3AT 401 A 1 HETATM 30 C C4 3AT . . . B 2 -19.589 6.192 -8.356 1 58.64 ? C4 3AT 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #