data_4FIA # _model_server_result.job_id cEpB0DwZv08YqjacAjdkMA _model_server_result.datetime_utc '2025-01-10 08:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 4FIA # _exptl.entry_id 4FIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FIA _cell.length_a 121.053 _cell.length_b 121.053 _cell.length_c 142.339 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 389 A CYS 437 1_555 B FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 B FE HEM . A HEM 600 1_555 F O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 230 n n CHA C4D HEM doub 231 n n CHA HHA HEM sing 232 n n CHB C4A HEM sing 233 n n CHB C1B HEM doub 234 n n CHB HHB HEM sing 235 n n CHC C4B HEM sing 236 n n CHC C1C HEM doub 237 n n CHC HHC HEM sing 238 n n CHD C4C HEM doub 239 n n CHD C1D HEM sing 240 n n CHD HHD HEM sing 241 n n C1A C2A HEM doub 242 n y C1A NA HEM sing 243 n y C2A C3A HEM sing 244 n y C2A CAA HEM sing 245 n n C3A C4A HEM doub 246 n y C3A CMA HEM sing 247 n n C4A NA HEM sing 248 n y CMA HMA HEM sing 249 n n CMA HMAA HEM sing 250 n n CMA HMAB HEM sing 251 n n CAA CBA HEM sing 252 n n CAA HAA HEM sing 253 n n CAA HAAA HEM sing 254 n n CBA CGA HEM sing 255 n n CBA HBA HEM sing 256 n n CBA HBAA HEM sing 257 n n CGA O1A HEM doub 258 n n CGA O2A HEM sing 259 n n C1B C2B HEM sing 260 n n C1B NB HEM sing 261 n n C2B C3B HEM doub 262 n n C2B CMB HEM sing 263 n n C3B C4B HEM sing 264 n n C3B CAB HEM sing 265 n n C4B NB HEM doub 266 n n CMB HMB HEM sing 267 n n CMB HMBA HEM sing 268 n n CMB HMBB HEM sing 269 n n CAB CBB HEM doub 270 n n CAB HAB HEM sing 271 n n CBB HBB HEM sing 272 n n CBB HBBA HEM sing 273 n n C1C C2C HEM sing 274 n y C1C NC HEM sing 275 n y C2C C3C HEM doub 276 n y C2C CMC HEM sing 277 n n C3C C4C HEM sing 278 n y C3C CAC HEM sing 279 n n C4C NC HEM sing 280 n y CMC HMC HEM sing 281 n n CMC HMCA HEM sing 282 n n CMC HMCB HEM sing 283 n n CAC CBC HEM doub 284 n n CAC HAC HEM sing 285 n n CBC HBC HEM sing 286 n n CBC HBCA HEM sing 287 n n C1D C2D HEM sing 288 n n C1D ND HEM doub 289 n n C2D C3D HEM doub 290 n n C2D CMD HEM sing 291 n n C3D C4D HEM sing 292 n n C3D CAD HEM sing 293 n n C4D ND HEM sing 294 n n CMD HMD HEM sing 295 n n CMD HMDA HEM sing 296 n n CMD HMDB HEM sing 297 n n CAD CBD HEM sing 298 n n CAD HAD HEM sing 299 n n CAD HADA HEM sing 300 n n CBD CGD HEM sing 301 n n CBD HBD HEM sing 302 n n CBD HBDA HEM sing 303 n n CGD O1D HEM doub 304 n n CGD O2D HEM sing 305 n n O2A H2A HEM sing 306 n n O2D H2D HEM sing 307 n n FE NA HEM sing 308 n n FE NB HEM sing 309 n n FE NC HEM sing 310 n n FE ND HEM sing 311 n n # _atom_sites.entry_id 4FIA _atom_sites.fract_transf_matrix[1][1] 0.008261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 0U9 A 1 601 601 0U9 0U9 . D 4 198 A 1 602 602 198 198 . E 5 GOL A 1 603 603 GOL GOL . F 6 HOH A 1 701 1 HOH HOH . F 6 HOH A 2 702 2 HOH HOH . F 6 HOH A 3 703 3 HOH HOH . F 6 HOH A 4 704 4 HOH HOH . F 6 HOH A 5 705 5 HOH HOH . F 6 HOH A 6 706 6 HOH HOH . F 6 HOH A 7 707 7 HOH HOH . F 6 HOH A 8 708 8 HOH HOH . F 6 HOH A 9 709 9 HOH HOH . F 6 HOH A 10 710 10 HOH HOH . F 6 HOH A 11 711 11 HOH HOH . F 6 HOH A 12 712 12 HOH HOH . F 6 HOH A 13 713 13 HOH HOH . F 6 HOH A 14 714 14 HOH HOH . F 6 HOH A 15 715 15 HOH HOH . F 6 HOH A 16 716 16 HOH HOH . F 6 HOH A 17 717 17 HOH HOH . F 6 HOH A 18 718 18 HOH HOH . F 6 HOH A 19 719 19 HOH HOH . F 6 HOH A 20 720 20 HOH HOH . F 6 HOH A 21 721 21 HOH HOH . F 6 HOH A 22 722 22 HOH HOH . F 6 HOH A 23 723 23 HOH HOH . F 6 HOH A 24 724 24 HOH HOH . F 6 HOH A 25 725 25 HOH HOH . F 6 HOH A 26 726 26 HOH HOH . F 6 HOH A 27 727 27 HOH HOH . F 6 HOH A 28 728 28 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 30 HOH HOH . F 6 HOH A 31 731 31 HOH HOH . F 6 HOH A 32 732 32 HOH HOH . F 6 HOH A 33 733 33 HOH HOH . F 6 HOH A 34 734 34 HOH HOH . F 6 HOH A 35 735 35 HOH HOH . F 6 HOH A 36 736 36 HOH HOH . F 6 HOH A 37 737 37 HOH HOH . F 6 HOH A 38 738 38 HOH HOH . F 6 HOH A 39 739 39 HOH HOH . F 6 HOH A 40 740 40 HOH HOH . F 6 HOH A 41 741 41 HOH HOH . F 6 HOH A 42 742 42 HOH HOH . F 6 HOH A 43 743 43 HOH HOH . F 6 HOH A 44 744 44 HOH HOH . F 6 HOH A 45 745 45 HOH HOH . F 6 HOH A 46 746 46 HOH HOH . F 6 HOH A 47 747 47 HOH HOH . F 6 HOH A 48 748 48 HOH HOH . F 6 HOH A 49 749 49 HOH HOH . F 6 HOH A 50 750 50 HOH HOH . F 6 HOH A 51 751 51 HOH HOH . F 6 HOH A 52 752 52 HOH HOH . F 6 HOH A 53 753 53 HOH HOH . F 6 HOH A 54 754 54 HOH HOH . F 6 HOH A 55 755 55 HOH HOH . F 6 HOH A 56 756 56 HOH HOH . F 6 HOH A 57 757 57 HOH HOH . F 6 HOH A 58 758 58 HOH HOH . F 6 HOH A 59 759 59 HOH HOH . F 6 HOH A 60 760 60 HOH HOH . F 6 HOH A 61 761 61 HOH HOH . F 6 HOH A 62 762 62 HOH HOH . F 6 HOH A 63 763 63 HOH HOH . F 6 HOH A 64 764 64 HOH HOH . F 6 HOH A 65 765 65 HOH HOH . F 6 HOH A 66 766 66 HOH HOH . F 6 HOH A 67 767 67 HOH HOH . F 6 HOH A 68 768 68 HOH HOH . F 6 HOH A 69 769 69 HOH HOH . F 6 HOH A 70 770 70 HOH HOH . F 6 HOH A 71 771 71 HOH HOH . F 6 HOH A 72 772 72 HOH HOH . F 6 HOH A 73 773 73 HOH HOH . F 6 HOH A 74 774 74 HOH HOH . F 6 HOH A 75 775 75 HOH HOH . F 6 HOH A 76 776 76 HOH HOH . F 6 HOH A 77 777 77 HOH HOH . F 6 HOH A 78 778 78 HOH HOH . F 6 HOH A 79 779 79 HOH HOH . F 6 HOH A 80 780 80 HOH HOH . F 6 HOH A 81 781 81 HOH HOH . F 6 HOH A 82 782 82 HOH HOH . F 6 HOH A 83 783 83 HOH HOH . F 6 HOH A 84 784 84 HOH HOH . F 6 HOH A 85 785 85 HOH HOH . F 6 HOH A 86 786 86 HOH HOH . F 6 HOH A 87 787 87 HOH HOH . F 6 HOH A 88 788 88 HOH HOH . F 6 HOH A 89 789 89 HOH HOH . F 6 HOH A 90 790 90 HOH HOH . F 6 HOH A 91 791 91 HOH HOH . F 6 HOH A 92 792 92 HOH HOH . F 6 HOH A 93 793 93 HOH HOH . F 6 HOH A 94 794 94 HOH HOH . F 6 HOH A 95 795 95 HOH HOH . F 6 HOH A 96 796 96 HOH HOH . F 6 HOH A 97 797 97 HOH HOH . F 6 HOH A 98 798 98 HOH HOH . F 6 HOH A 99 799 99 HOH HOH . F 6 HOH A 100 800 100 HOH HOH . F 6 HOH A 101 801 101 HOH HOH . F 6 HOH A 102 802 102 HOH HOH . F 6 HOH A 103 803 103 HOH HOH . F 6 HOH A 104 804 104 HOH HOH . F 6 HOH A 105 805 105 HOH HOH . F 6 HOH A 106 806 106 HOH HOH . F 6 HOH A 107 807 107 HOH HOH . F 6 HOH A 108 808 108 HOH HOH . F 6 HOH A 109 809 109 HOH HOH . F 6 HOH A 110 810 110 HOH HOH . F 6 HOH A 111 811 111 HOH HOH . F 6 HOH A 112 812 112 HOH HOH . F 6 HOH A 113 813 113 HOH HOH . F 6 HOH A 114 814 114 HOH HOH . F 6 HOH A 115 815 115 HOH HOH . F 6 HOH A 116 816 116 HOH HOH . F 6 HOH A 117 817 117 HOH HOH . F 6 HOH A 118 818 118 HOH HOH . F 6 HOH A 119 819 119 HOH HOH . F 6 HOH A 120 820 120 HOH HOH . F 6 HOH A 121 821 121 HOH HOH . F 6 HOH A 122 822 122 HOH HOH . F 6 HOH A 123 823 123 HOH HOH . F 6 HOH A 124 824 124 HOH HOH . F 6 HOH A 125 825 125 HOH HOH . F 6 HOH A 126 826 126 HOH HOH . F 6 HOH A 127 827 127 HOH HOH . F 6 HOH A 128 828 128 HOH HOH . F 6 HOH A 129 829 129 HOH HOH . F 6 HOH A 130 830 130 HOH HOH . F 6 HOH A 131 831 131 HOH HOH . F 6 HOH A 132 832 132 HOH HOH . F 6 HOH A 133 833 133 HOH HOH . F 6 HOH A 134 834 134 HOH HOH . F 6 HOH A 135 835 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 1.801 29.735 -8.116 1 29.88 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 -2.697 31.648 -8.674 1 26.75 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 -0.942 36.049 -7.511 1 25.89 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 3.574 34.001 -7.125 1 29.89 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 0.297 29.878 -8.256 1 25.83 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 -0.677 28.735 -8.322 1 27.87 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 -1.837 29.296 -8.677 1 29 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 -1.727 30.768 -8.479 1 28.03 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 -3.125 28.578 -9.003 1 29.63 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 -0.251 27.298 -8.606 1 26.11 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 0.447 27.155 -9.967 1 31.8 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 0.734 25.698 -10.327 1 32.32 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 1.322 25.455 -11.358 1 33.2 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 0.365 24.659 -9.579 1 34.55 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 -2.597 33.067 -8.249 1 26.36 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 -3.656 33.909 -8.297 1 25.62 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 -3.141 35.259 -8.034 1 25.78 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 -1.692 35.049 -7.947 1 23.89 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 -5.01 33.623 -8.945 1 27.34 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 -3.721 36.468 -8.138 1 26.83 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 -5.093 36.752 -7.636 1 26.86 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 0.482 35.858 -7.153 1 27.86 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 1.314 36.856 -6.855 1 28.75 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 2.581 36.186 -6.558 1 29.58 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 2.442 34.965 -7.089 1 27.96 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 0.927 38.275 -6.482 1 25.66 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 3.905 36.846 -6.223 1 32.26 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 4.004 37.996 -5.56 1 35.49 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 3.393 32.683 -7.267 1 32.59 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 4.519 31.721 -7.328 1 31.61 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 3.99 30.513 -7.437 1 32.46 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 2.518 30.7 -7.537 1 30.65 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 5.99 32.068 -7.284 1 31.8 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 4.71 29.173 -7.308 1 33.91 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 4.516 28.659 -5.879 1 36.52 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 5.32 27.415 -5.543 1 41.13 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 5.978 27.387 -4.51 1 41.54 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 5.296 26.327 -6.32 1 42.84 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 -0.46 31.083 -8.21 1 26.9 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 -1.431 33.698 -7.955 1 22.88 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 1.165 34.744 -7.453 1 27.27 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 2.284 32.033 -7.677 1 28.57 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 0.43 32.832 -7.63 1 28.85 ? FE HEM 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #