data_4FIE # _model_server_result.job_id 6Qvt5WkO3BaDx3g_JqGk2Q _model_server_result.datetime_utc '2024-11-23 01:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4FIE # _exptl.entry_id 4FIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FIE _cell.length_a 141.537 _cell.length_b 141.537 _cell.length_c 61.893 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 305 A LYS 473 1_555 A N SEP 306 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 306 A SEP 474 1_555 A N LEU 307 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C LYS 305 B LYS 473 1_555 B N SEP 306 B SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C SEP 306 B SEP 474 1_555 B N LEU 307 B LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4FIE _atom_sites.fract_transf_matrix[1][1] 0.007065 _atom_sites.fract_transf_matrix[1][2] 0.004079 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1001 1001 ANP ANP . D 2 ANP B 1 1001 1001 ANP ANP . E 3 HOH A 1 1101 2 HOH HOH . F 3 HOH B 1 1101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 24.493 -24.807 16.226 0.5 106.03 ? PG ANP 1001 A 1 HETATM 2 O O1G ANP . . . C 2 24.697 -26.301 16.169 0.5 106.21 ? O1G ANP 1001 A 1 HETATM 3 O O2G ANP . . . C 2 25.537 -24.02 15.473 0.5 104.67 ? O2G ANP 1001 A 1 HETATM 4 O O3G ANP . . . C 2 23.078 -24.366 15.94 0.5 104.1 ? O3G ANP 1001 A 1 HETATM 5 P PB ANP . . . C 2 25.241 -25.677 19.034 0.5 113.82 ? PB ANP 1001 A 1 HETATM 6 O O1B ANP . . . C 2 26.327 -26.491 18.375 0.5 113.92 ? O1B ANP 1001 A 1 HETATM 7 O O2B ANP . . . C 2 23.998 -26.412 19.476 0.5 112.97 ? O2B ANP 1001 A 1 HETATM 8 N N3B ANP . . . C 2 24.757 -24.421 17.913 0.5 110.2 ? N3B ANP 1001 A 1 HETATM 9 P PA ANP . . . C 2 25.089 -24.4 21.574 0.5 115.18 ? PA ANP 1001 A 1 HETATM 10 O O1A ANP . . . C 2 24.062 -25.428 21.991 1 116.71 ? O1A ANP 1001 A 1 HETATM 11 O O2A ANP . . . C 2 24.657 -22.995 21.239 0.5 114.42 ? O2A ANP 1001 A 1 HETATM 12 O O3A ANP . . . C 2 25.928 -24.985 20.324 0.5 114.75 ? O3A ANP 1001 A 1 HETATM 13 O O5' ANP . . . C 2 26.208 -24.275 22.728 0.5 113.54 ? O5' ANP 1001 A 1 HETATM 14 C C5' ANP . . . C 2 25.923 -24.582 24.093 0.5 112.58 ? C5' ANP 1001 A 1 HETATM 15 C C4' ANP . . . C 2 25.198 -23.429 24.783 0.5 111.78 ? C4' ANP 1001 A 1 HETATM 16 O O4' ANP . . . C 2 26.074 -22.315 24.979 1 110.3 ? O4' ANP 1001 A 1 HETATM 17 C C3' ANP . . . C 2 24.011 -22.914 23.981 0.5 112.5 ? C3' ANP 1001 A 1 HETATM 18 O O3' ANP . . . C 2 22.783 -23.465 24.474 1 114.67 ? O3' ANP 1001 A 1 HETATM 19 C C2' ANP . . . C 2 24.04 -21.405 24.142 0.5 111.3 ? C2' ANP 1001 A 1 HETATM 20 O O2' ANP . . . C 2 22.919 -20.962 24.914 1 109.76 ? O2' ANP 1001 A 1 HETATM 21 C C1' ANP . . . C 2 25.342 -21.089 24.871 0.5 110.7 ? C1' ANP 1001 A 1 HETATM 22 N N9 ANP . . . C 2 26.128 -20.051 24.143 1 110.28 ? N9 ANP 1001 A 1 HETATM 23 C C8 ANP . . . C 2 26.465 -20.077 22.835 1 111.14 ? C8 ANP 1001 A 1 HETATM 24 N N7 ANP . . . C 2 27.18 -18.975 22.488 1 110.87 ? N7 ANP 1001 A 1 HETATM 25 C C5 ANP . . . C 2 27.319 -18.213 23.593 1 108.21 ? C5 ANP 1001 A 1 HETATM 26 C C6 ANP . . . C 2 27.962 -16.913 23.931 1 105.69 ? C6 ANP 1001 A 1 HETATM 27 N N6 ANP . . . C 2 28.624 -16.189 22.994 1 102.09 ? N6 ANP 1001 A 1 HETATM 28 N N1 ANP . . . C 2 27.867 -16.473 25.21 1 104.95 ? N1 ANP 1001 A 1 HETATM 29 C C2 ANP . . . C 2 27.213 -17.178 26.158 1 105.6 ? C2 ANP 1001 A 1 HETATM 30 N N3 ANP . . . C 2 26.607 -18.36 25.921 1 105.97 ? N3 ANP 1001 A 1 HETATM 31 C C4 ANP . . . C 2 26.621 -18.925 24.682 1 108.16 ? C4 ANP 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #