data_4FIF # _model_server_result.job_id GTD-t8sJiUwgh4Tk1B0IAA _model_server_result.datetime_utc '2024-11-26 12:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 4FIF # _exptl.entry_id 4FIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FIF _cell.length_a 141.411 _cell.length_b 141.411 _cell.length_c 61.624 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 228 A LYS 473 1_555 A N SEP 229 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 229 A SEP 474 1_555 A N LEU 230 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LYS 228 B LYS 473 1_555 B N SEP 229 B SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C SEP 229 B SEP 474 1_555 B N LEU 230 B LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4FIF _atom_sites.fract_transf_matrix[1][1] 0.007072 _atom_sites.fract_transf_matrix[1][2] 0.004083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 1000 1000 ANP ANP . F 3 ANP B 1 1000 1000 ANP ANP . G 4 HOH A 1 1101 1 HOH HOH . G 4 HOH A 2 1102 2 HOH HOH . G 4 HOH A 3 1103 3 HOH HOH . G 4 HOH A 4 1104 4 HOH HOH . G 4 HOH A 5 1105 5 HOH HOH . G 4 HOH A 6 1106 6 HOH HOH . G 4 HOH A 7 1107 7 HOH HOH . G 4 HOH A 8 1108 8 HOH HOH . G 4 HOH A 9 1109 9 HOH HOH . G 4 HOH A 10 1110 10 HOH HOH . G 4 HOH A 11 1111 12 HOH HOH . G 4 HOH A 12 1112 13 HOH HOH . G 4 HOH A 13 1113 14 HOH HOH . G 4 HOH A 14 1114 15 HOH HOH . G 4 HOH A 15 1115 16 HOH HOH . G 4 HOH A 16 1116 17 HOH HOH . G 4 HOH A 17 1117 18 HOH HOH . G 4 HOH A 18 1118 38 HOH HOH . G 4 HOH A 19 1119 39 HOH HOH . G 4 HOH A 20 1120 41 HOH HOH . G 4 HOH A 21 1121 50 HOH HOH . G 4 HOH A 22 1122 53 HOH HOH . G 4 HOH A 23 1123 54 HOH HOH . G 4 HOH A 24 1124 55 HOH HOH . G 4 HOH A 25 1125 56 HOH HOH . G 4 HOH A 26 1126 59 HOH HOH . H 4 HOH B 1 1101 19 HOH HOH . H 4 HOH B 2 1102 20 HOH HOH . H 4 HOH B 3 1103 21 HOH HOH . H 4 HOH B 4 1104 22 HOH HOH . H 4 HOH B 5 1105 23 HOH HOH . H 4 HOH B 6 1106 24 HOH HOH . H 4 HOH B 7 1107 25 HOH HOH . H 4 HOH B 8 1108 26 HOH HOH . H 4 HOH B 9 1109 27 HOH HOH . H 4 HOH B 10 1110 28 HOH HOH . H 4 HOH B 11 1111 29 HOH HOH . H 4 HOH B 12 1112 30 HOH HOH . H 4 HOH B 13 1113 31 HOH HOH . H 4 HOH B 14 1114 32 HOH HOH . H 4 HOH B 15 1115 33 HOH HOH . H 4 HOH B 16 1116 34 HOH HOH . H 4 HOH B 17 1117 35 HOH HOH . H 4 HOH B 18 1118 36 HOH HOH . H 4 HOH B 19 1119 37 HOH HOH . H 4 HOH B 20 1120 40 HOH HOH . H 4 HOH B 21 1121 42 HOH HOH . H 4 HOH B 22 1122 43 HOH HOH . H 4 HOH B 23 1123 44 HOH HOH . H 4 HOH B 24 1124 45 HOH HOH . H 4 HOH B 25 1125 46 HOH HOH . H 4 HOH B 26 1126 47 HOH HOH . H 4 HOH B 27 1127 48 HOH HOH . H 4 HOH B 28 1128 49 HOH HOH . H 4 HOH B 29 1129 52 HOH HOH . H 4 HOH B 30 1130 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 24.636 -24.555 -9.276 0.5 66.54 ? PG ANP 1000 B 1 HETATM 2 O O1G ANP . . . F 3 25.124 -25.851 -9.798 0.5 64.62 ? O1G ANP 1000 B 1 HETATM 3 O O2G ANP . . . F 3 25.407 -23.351 -10.019 0.5 62.27 ? O2G ANP 1000 B 1 HETATM 4 O O3G ANP . . . F 3 23.054 -24.425 -9.546 0.5 63.75 ? O3G ANP 1000 B 1 HETATM 5 P PB ANP . . . F 3 25.109 -25.918 -6.585 0.5 67.7 ? PB ANP 1000 B 1 HETATM 6 O O1B ANP . . . F 3 23.778 -26.477 -6.255 0.5 67.31 ? O1B ANP 1000 B 1 HETATM 7 O O2B ANP . . . F 3 25.944 -27.013 -7.414 0.5 65.92 ? O2B ANP 1000 B 1 HETATM 8 N N3B ANP . . . F 3 24.924 -24.469 -7.55 0.5 65.22 ? N3B ANP 1000 B 1 HETATM 9 P PA ANP . . . F 3 25.465 -24.26 -4.343 0.5 67.93 ? PA ANP 1000 B 1 HETATM 10 O O1A ANP . . . F 3 26.461 -23.153 -4.611 1 66.36 ? O1A ANP 1000 B 1 HETATM 11 O O2A ANP . . . F 3 23.992 -24.016 -4.564 1 68.9 ? O2A ANP 1000 B 1 HETATM 12 O O3A ANP . . . F 3 25.891 -25.543 -5.224 0.5 67.53 ? O3A ANP 1000 B 1 HETATM 13 O O5' ANP . . . F 3 25.631 -24.762 -2.82 0.5 68.93 ? O5' ANP 1000 B 1 HETATM 14 C C5' ANP . . . F 3 26.65 -24.238 -1.967 1 70.31 ? C5' ANP 1000 B 1 HETATM 15 C C4' ANP . . . F 3 26.097 -23.507 -0.738 1 71.34 ? C4' ANP 1000 B 1 HETATM 16 O O4' ANP . . . F 3 26.869 -22.324 -0.491 1 69.89 ? O4' ANP 1000 B 1 HETATM 17 C C3' ANP . . . F 3 24.643 -23.074 -0.878 1 72.02 ? C3' ANP 1000 B 1 HETATM 18 O O3' ANP . . . F 3 23.919 -23.485 0.289 1 73.38 ? O3' ANP 1000 B 1 HETATM 19 C C2' ANP . . . F 3 24.678 -21.56 -0.994 1 70.66 ? C2' ANP 1000 B 1 HETATM 20 O O2' ANP . . . F 3 23.622 -20.94 -0.251 1 71.69 ? O2' ANP 1000 B 1 HETATM 21 C C1' ANP . . . F 3 26.041 -21.154 -0.447 1 68.31 ? C1' ANP 1000 B 1 HETATM 22 N N9 ANP . . . F 3 26.624 -20.04 -1.247 1 64.83 ? N9 ANP 1000 B 1 HETATM 23 C C8 ANP . . . F 3 26.929 -20.069 -2.563 1 63.67 ? C8 ANP 1000 B 1 HETATM 24 N N7 ANP . . . F 3 27.443 -18.88 -2.977 1 63.13 ? N7 ANP 1000 B 1 HETATM 25 C C5 ANP . . . F 3 27.475 -18.061 -1.91 1 60.18 ? C5 ANP 1000 B 1 HETATM 26 C C6 ANP . . . F 3 27.896 -16.662 -1.645 1 58.58 ? C6 ANP 1000 B 1 HETATM 27 N N6 ANP . . . F 3 28.401 -15.888 -2.633 1 55.97 ? N6 ANP 1000 B 1 HETATM 28 N N1 ANP . . . F 3 27.759 -16.184 -0.384 1 57.58 ? N1 ANP 1000 B 1 HETATM 29 C C2 ANP . . . F 3 27.255 -16.946 0.61 1 58.27 ? C2 ANP 1000 B 1 HETATM 30 N N3 ANP . . . F 3 26.854 -18.224 0.441 1 60.13 ? N3 ANP 1000 B 1 HETATM 31 C C4 ANP . . . F 3 26.933 -18.828 -0.773 1 61.48 ? C4 ANP 1000 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #