data_4FIG # _model_server_result.job_id P9gfDhyzK2uzndOdYpSD-g _model_server_result.datetime_utc '2024-11-26 12:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4FIG # _exptl.entry_id 4FIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FIG _cell.length_a 141.918 _cell.length_b 141.918 _cell.length_c 61.872 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 228 A LYS 473 1_555 A N SEP 229 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 229 A SEP 474 1_555 A N LEU 230 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C LYS 228 B LYS 473 1_555 B N SEP 229 B SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C SEP 229 B SEP 474 1_555 B N LEU 230 B LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 C O1A ANP . A ANP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 C O2B ANP . A ANP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 E MG MG . B MG 601 1_555 F O1A ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc4 E MG MG . B MG 601 1_555 F O2B ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4FIG _atom_sites.fract_transf_matrix[1][1] 0.007046 _atom_sites.fract_transf_matrix[1][2] 0.004068 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1001 1001 ANP ANP . D 3 MG A 1 1002 1002 MG MG . E 3 MG B 1 601 1002 MG MG . F 2 ANP B 1 602 1001 ANP ANP . G 4 HOH A 1 1101 1 HOH HOH . G 4 HOH A 2 1102 2 HOH HOH . G 4 HOH A 3 1103 3 HOH HOH . G 4 HOH A 4 1104 7 HOH HOH . G 4 HOH A 5 1105 9 HOH HOH . G 4 HOH A 6 1106 10 HOH HOH . G 4 HOH A 7 1107 11 HOH HOH . G 4 HOH A 8 1108 12 HOH HOH . G 4 HOH A 9 1109 13 HOH HOH . H 4 HOH B 1 701 4 HOH HOH . H 4 HOH B 2 702 5 HOH HOH . H 4 HOH B 3 703 6 HOH HOH . H 4 HOH B 4 704 8 HOH HOH . H 4 HOH B 5 705 14 HOH HOH . H 4 HOH B 6 706 15 HOH HOH . H 4 HOH B 7 707 16 HOH HOH . H 4 HOH B 8 708 17 HOH HOH . H 4 HOH B 9 709 18 HOH HOH . H 4 HOH B 10 710 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 33.939 -8.85 -16.677 0.5 100.06 ? PG ANP 1001 A 1 HETATM 2 O O1G ANP . . . C 2 35.389 -8.443 -16.566 0.5 97.46 ? O1G ANP 1001 A 1 HETATM 3 O O2G ANP . . . C 2 33.622 -10.168 -16.01 0.5 95.94 ? O2G ANP 1001 A 1 HETATM 4 O O3G ANP . . . C 2 32.966 -7.747 -16.328 0.5 96.91 ? O3G ANP 1001 A 1 HETATM 5 P PB ANP . . . C 2 35.014 -8.882 -19.529 0.5 96.61 ? PB ANP 1001 A 1 HETATM 6 O O1B ANP . . . C 2 36.312 -9.156 -18.808 0.5 95.77 ? O1B ANP 1001 A 1 HETATM 7 O O2B ANP . . . C 2 34.841 -7.524 -20.171 0.5 94.75 ? O2B ANP 1001 A 1 HETATM 8 N N3B ANP . . . C 2 33.701 -9.13 -18.392 0.5 97.07 ? N3B ANP 1001 A 1 HETATM 9 P PA ANP . . . C 2 33.479 -10.298 -21.417 0.5 90.18 ? PA ANP 1001 A 1 HETATM 10 O O1A ANP . . . C 2 32.791 -8.982 -21.701 1 92.36 ? O1A ANP 1001 A 1 HETATM 11 O O2A ANP . . . C 2 32.769 -11.35 -20.6 1 89.5 ? O2A ANP 1001 A 1 HETATM 12 O O3A ANP . . . C 2 34.892 -9.983 -20.706 0.5 93.38 ? O3A ANP 1001 A 1 HETATM 13 O O5' ANP . . . C 2 33.896 -10.996 -22.81 1 88.92 ? O5' ANP 1001 A 1 HETATM 14 C C5' ANP . . . C 2 34.231 -10.239 -23.975 1 88.77 ? C5' ANP 1001 A 1 HETATM 15 C C4' ANP . . . C 2 33.235 -10.468 -25.113 1 89.41 ? C4' ANP 1001 A 1 HETATM 16 O O4' ANP . . . C 2 32.816 -11.837 -25.196 1 85.47 ? O4' ANP 1001 A 1 HETATM 17 C C3' ANP . . . C 2 31.98 -9.621 -24.937 1 92.57 ? C3' ANP 1001 A 1 HETATM 18 O O3' ANP . . . C 2 31.976 -8.524 -25.86 1 98.58 ? O3' ANP 1001 A 1 HETATM 19 C C2' ANP . . . C 2 30.807 -10.563 -25.165 1 88.93 ? C2' ANP 1001 A 1 HETATM 20 O O2' ANP . . . C 2 29.961 -10.113 -26.231 1 91.25 ? O2' ANP 1001 A 1 HETATM 21 C C1' ANP . . . C 2 31.415 -11.925 -25.486 1 82.97 ? C1' ANP 1001 A 1 HETATM 22 N N9 ANP . . . C 2 30.749 -12.971 -24.658 1 77.28 ? N9 ANP 1001 A 1 HETATM 23 C C8 ANP . . . C 2 30.874 -13.117 -23.32 1 77.8 ? C8 ANP 1001 A 1 HETATM 24 N N7 ANP . . . C 2 30.132 -14.159 -22.858 1 75.31 ? N7 ANP 1001 A 1 HETATM 25 C C5 ANP . . . C 2 29.507 -14.703 -23.918 1 70.99 ? C5 ANP 1001 A 1 HETATM 26 C C6 ANP . . . C 2 28.569 -15.831 -24.133 1 68.91 ? C6 ANP 1001 A 1 HETATM 27 N N6 ANP . . . C 2 28.155 -16.598 -23.096 1 66.17 ? N6 ANP 1001 A 1 HETATM 28 N N1 ANP . . . C 2 28.148 -16.069 -25.397 1 68.57 ? N1 ANP 1001 A 1 HETATM 29 C C2 ANP . . . C 2 28.563 -15.31 -26.432 1 69.4 ? C2 ANP 1001 A 1 HETATM 30 N N3 ANP . . . C 2 29.413 -14.268 -26.309 1 69.12 ? N3 ANP 1001 A 1 HETATM 31 C C4 ANP . . . C 2 29.913 -13.917 -25.1 1 71.49 ? C4 ANP 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #