data_4FIR
#
_model_server_result.job_id            GoGdTw6-xfqFDTygBIZhbA 
_model_server_result.datetime_utc      '2024-12-27 08:15:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    4FIR 
#
_exptl.entry_id    4FIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.53 
_cell.angle_gamma         90 
_cell.entry_id            4FIR 
_cell.length_a            59.165 
_cell.length_b            179.065 
_cell.length_c            109.359 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 87 A LYS 87 1_555 G C1 R5P . A R5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 B NZ LYS 87 B LYS 87 1_555 H C1 R5P . B R5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale3 C NZ LYS 87 C LYS 87 1_555 I C1 R5P . C R5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale4 D NZ LYS 87 D LYS 87 1_555 J C1 R5P . D R5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? 
covale ? covale5 E NZ LYS 87 E LYS 87 1_555 K C1 R5P . E R5P 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 R5P doub 277 n n 
C1 C2 R5P sing 278 n n 
C2 O2 R5P sing 279 n n 
C2 C3 R5P sing 280 n n 
C3 O3 R5P sing 281 n n 
C3 C4 R5P sing 282 n n 
C4 O4 R5P sing 283 n n 
C4 C5 R5P sing 284 n n 
C5 O5 R5P sing 285 n n 
O5 P R5P sing 286 n n 
P O1P R5P doub 287 n n 
P O2P R5P sing 288 n n 
P O3P R5P sing 289 n n 
C1 H11 R5P sing 290 n n 
C2 HC2 R5P sing 291 n n 
O2 HO2 R5P sing 292 n n 
C3 HC3 R5P sing 293 n n 
O3 HO3 R5P sing 294 n n 
C4 HC4 R5P sing 295 n n 
O4 HO4 R5P sing 296 n n 
C5 H51 R5P sing 297 n n 
C5 H52 R5P sing 298 n n 
O2P HOP2 R5P sing 299 n n 
O3P HOP3 R5P sing 300 n n 
#
_atom_sites.entry_id                     4FIR 
_atom_sites.fract_transf_matrix[1][1]    0.016902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003756 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009367 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 R5P A 1 401 350 R5P R5P . 
H 2 R5P B 1 401 350 R5P R5P . 
I 2 R5P C 1 401 350 R5P R5P . 
J 2 R5P D 1 401 350 R5P R5P . 
K 2 R5P E 1 401 350 R5P R5P . 
L 2 R5P F 1 401 350 R5P R5P . 
M 3 HOH A 1 501 7 HOH HOH . 
M 3 HOH A 2 502 11 HOH HOH . 
M 3 HOH A 3 503 12 HOH HOH . 
M 3 HOH A 4 504 14 HOH HOH . 
M 3 HOH A 5 505 15 HOH HOH . 
M 3 HOH A 6 506 21 HOH HOH . 
M 3 HOH A 7 507 26 HOH HOH . 
M 3 HOH A 8 508 34 HOH HOH . 
M 3 HOH A 9 509 37 HOH HOH . 
M 3 HOH A 10 510 40 HOH HOH . 
M 3 HOH A 11 511 52 HOH HOH . 
M 3 HOH A 12 512 53 HOH HOH . 
M 3 HOH A 13 513 69 HOH HOH . 
M 3 HOH A 14 514 72 HOH HOH . 
N 3 HOH B 1 501 3 HOH HOH . 
N 3 HOH B 2 502 5 HOH HOH . 
N 3 HOH B 3 503 6 HOH HOH . 
N 3 HOH B 4 504 17 HOH HOH . 
N 3 HOH B 5 505 61 HOH HOH . 
N 3 HOH B 6 506 68 HOH HOH . 
N 3 HOH B 7 507 70 HOH HOH . 
O 3 HOH C 1 501 22 HOH HOH . 
O 3 HOH C 2 502 23 HOH HOH . 
O 3 HOH C 3 503 28 HOH HOH . 
O 3 HOH C 4 504 47 HOH HOH . 
O 3 HOH C 5 505 48 HOH HOH . 
O 3 HOH C 6 506 49 HOH HOH . 
O 3 HOH C 7 507 51 HOH HOH . 
O 3 HOH C 8 508 59 HOH HOH . 
P 3 HOH D 1 501 1 HOH HOH . 
P 3 HOH D 2 502 31 HOH HOH . 
P 3 HOH D 3 503 32 HOH HOH . 
P 3 HOH D 4 504 33 HOH HOH . 
P 3 HOH D 5 505 35 HOH HOH . 
P 3 HOH D 6 506 36 HOH HOH . 
P 3 HOH D 7 507 38 HOH HOH . 
P 3 HOH D 8 508 39 HOH HOH . 
P 3 HOH D 9 509 42 HOH HOH . 
P 3 HOH D 10 510 56 HOH HOH . 
P 3 HOH D 11 511 63 HOH HOH . 
P 3 HOH D 12 512 65 HOH HOH . 
P 3 HOH D 13 513 71 HOH HOH . 
Q 3 HOH E 1 501 8 HOH HOH . 
Q 3 HOH E 2 502 9 HOH HOH . 
Q 3 HOH E 3 503 10 HOH HOH . 
Q 3 HOH E 4 504 18 HOH HOH . 
Q 3 HOH E 5 505 24 HOH HOH . 
Q 3 HOH E 6 506 25 HOH HOH . 
Q 3 HOH E 7 507 27 HOH HOH . 
Q 3 HOH E 8 508 29 HOH HOH . 
Q 3 HOH E 9 509 41 HOH HOH . 
Q 3 HOH E 10 510 43 HOH HOH . 
Q 3 HOH E 11 511 45 HOH HOH . 
Q 3 HOH E 12 512 58 HOH HOH . 
Q 3 HOH E 13 513 60 HOH HOH . 
Q 3 HOH E 14 514 64 HOH HOH . 
R 3 HOH F 1 501 2 HOH HOH . 
R 3 HOH F 2 502 4 HOH HOH . 
R 3 HOH F 3 503 13 HOH HOH . 
R 3 HOH F 4 504 16 HOH HOH . 
R 3 HOH F 5 505 19 HOH HOH . 
R 3 HOH F 6 506 20 HOH HOH . 
R 3 HOH F 7 507 30 HOH HOH . 
R 3 HOH F 8 508 44 HOH HOH . 
R 3 HOH F 9 509 46 HOH HOH . 
R 3 HOH F 10 510 50 HOH HOH . 
R 3 HOH F 11 511 54 HOH HOH . 
R 3 HOH F 12 512 55 HOH HOH . 
R 3 HOH F 13 513 57 HOH HOH . 
R 3 HOH F 14 514 62 HOH HOH . 
R 3 HOH F 15 515 66 HOH HOH . 
R 3 HOH F 16 516 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 R5P . . . L 2 18.211 9.526 -3.497 1 46.7 ? C1 R5P 401 F 1 
HETATM 2 C C2 R5P . . . L 2 17.34 8.899 -2.409 1 54.91 ? C2 R5P 401 F 1 
HETATM 3 O O2 R5P . . . L 2 17.569 9.473 -1.138 1 55.91 ? O2 R5P 401 F 1 
HETATM 4 C C3 R5P . . . L 2 17.707 7.502 -2.035 1 40.72 ? C3 R5P 401 F 1 
HETATM 5 O O3 R5P . . . L 2 18.754 7.038 -2.868 1 63.16 ? O3 R5P 401 F 1 
HETATM 6 C C4 R5P . . . L 2 16.477 6.649 -2.164 1 48.54 ? C4 R5P 401 F 1 
HETATM 7 O O4 R5P . . . L 2 15.273 7.418 -1.87 1 41.96 ? O4 R5P 401 F 1 
HETATM 8 C C5 R5P . . . L 2 16.739 5.51 -1.188 1 54.96 ? C5 R5P 401 F 1 
HETATM 9 O O5 R5P . . . L 2 18.123 5.332 -0.913 1 28.77 ? O5 R5P 401 F 1 
HETATM 10 P P R5P . . . L 2 18.649 3.88 -0.448 1 61.32 ? P R5P 401 F 1 
HETATM 11 O O1P R5P . . . L 2 18.652 3.102 -1.77 1 50.74 ? O1P R5P 401 F 1 
HETATM 12 O O2P R5P . . . L 2 19.991 4.295 0.103 1 52.24 ? O2P R5P 401 F 1 
HETATM 13 O O3P R5P . . . L 2 17.737 3.328 0.644 1 30.83 ? O3P R5P 401 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#