data_4FJ2 # _model_server_result.job_id b5cC4DU8h_2OkYsWRyv3TA _model_server_result.datetime_utc '2024-11-28 22:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 4FJ2 # _exptl.entry_id 4FJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.263 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.93 _cell.angle_gamma 90 _cell.entry_id 4FJ2 _cell.length_a 62.43 _cell.length_b 115.28 _cell.length_c 69.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,P,Q 1 1 C,D,J,K,L,M,N,O,R,S 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 N N N # _chem_comp.formula 'C16 H12 O5' _chem_comp.formula_weight 284.263 _chem_comp.id QSO _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Biochanin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 QSO sing 366 n n O1 C8A QSO sing 367 n n C8 C8A QSO doub 368 n y C8 C7 QSO sing 369 n y C2 C3 QSO doub 370 n n O4 C7 QSO sing 371 n n C8A C4A QSO sing 372 n y C7 C6 QSO doub 373 n y C6' C5' QSO doub 374 n y C6' C1' QSO sing 375 n y C3 C1' QSO sing 376 n n C3 C4 QSO sing 377 n n C5' C4' QSO sing 378 n y C1' C2' QSO doub 379 n y C4A C4 QSO sing 380 n n C4A C5 QSO doub 381 n y CM O5 QSO sing 382 n n C6 C5 QSO sing 383 n y C4 O2 QSO doub 384 n n C4' O5 QSO sing 385 n n C4' C3' QSO doub 386 n y C2' C3' QSO sing 387 n y C5 O3 QSO sing 388 n n C2 H2 QSO sing 389 n n O4 HO4 QSO sing 390 n n C6 H6 QSO sing 391 n n C8 H8 QSO sing 392 n n C2' H2' QSO sing 393 n n C3' H3' QSO sing 394 n n C5' H5' QSO sing 395 n n C6' H6' QSO sing 396 n n O3 HO3 QSO sing 397 n n CM HM1 QSO sing 398 n n CM HM2 QSO sing 399 n n CM HM3 QSO sing 400 n n # _atom_sites.entry_id 4FJ2 _atom_sites.fract_transf_matrix[1][1] 0.016018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003678 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 1 NAP NAP . F 3 EDO A 1 302 6 EDO EDO . G 2 NAP B 1 301 2 NAP NAP . H 4 QSO B 1 302 2 QSO QSO . I 3 EDO B 1 303 5 EDO EDO . J 2 NAP C 1 301 3 NAP NAP . K 3 EDO C 1 302 2 EDO EDO . L 3 EDO C 1 303 4 EDO EDO . M 2 NAP D 1 301 4 NAP NAP . N 4 QSO D 1 302 1 QSO QSO . O 3 EDO D 1 303 3 EDO EDO . P 5 HOH A 1 401 2 HOH HOH . P 5 HOH A 2 402 3 HOH HOH . P 5 HOH A 3 403 12 HOH HOH . P 5 HOH A 4 404 25 HOH HOH . P 5 HOH A 5 405 33 HOH HOH . P 5 HOH A 6 406 43 HOH HOH . P 5 HOH A 7 407 53 HOH HOH . P 5 HOH A 8 408 62 HOH HOH . P 5 HOH A 9 409 64 HOH HOH . P 5 HOH A 10 410 65 HOH HOH . P 5 HOH A 11 411 69 HOH HOH . P 5 HOH A 12 412 76 HOH HOH . P 5 HOH A 13 413 86 HOH HOH . P 5 HOH A 14 414 88 HOH HOH . P 5 HOH A 15 415 94 HOH HOH . P 5 HOH A 16 416 97 HOH HOH . P 5 HOH A 17 417 103 HOH HOH . P 5 HOH A 18 418 120 HOH HOH . P 5 HOH A 19 419 121 HOH HOH . P 5 HOH A 20 420 122 HOH HOH . P 5 HOH A 21 421 123 HOH HOH . P 5 HOH A 22 422 125 HOH HOH . P 5 HOH A 23 423 151 HOH HOH . P 5 HOH A 24 424 160 HOH HOH . P 5 HOH A 25 425 163 HOH HOH . P 5 HOH A 26 426 171 HOH HOH . P 5 HOH A 27 427 172 HOH HOH . P 5 HOH A 28 428 178 HOH HOH . P 5 HOH A 29 429 180 HOH HOH . Q 5 HOH B 1 401 5 HOH HOH . Q 5 HOH B 2 402 7 HOH HOH . Q 5 HOH B 3 403 11 HOH HOH . Q 5 HOH B 4 404 14 HOH HOH . Q 5 HOH B 5 405 21 HOH HOH . Q 5 HOH B 6 406 24 HOH HOH . Q 5 HOH B 7 407 26 HOH HOH . Q 5 HOH B 8 408 29 HOH HOH . Q 5 HOH B 9 409 31 HOH HOH . Q 5 HOH B 10 410 41 HOH HOH . Q 5 HOH B 11 411 42 HOH HOH . Q 5 HOH B 12 412 48 HOH HOH . Q 5 HOH B 13 413 49 HOH HOH . Q 5 HOH B 14 414 51 HOH HOH . Q 5 HOH B 15 415 59 HOH HOH . Q 5 HOH B 16 416 68 HOH HOH . Q 5 HOH B 17 417 70 HOH HOH . Q 5 HOH B 18 418 72 HOH HOH . Q 5 HOH B 19 419 78 HOH HOH . Q 5 HOH B 20 420 84 HOH HOH . Q 5 HOH B 21 421 87 HOH HOH . Q 5 HOH B 22 422 89 HOH HOH . Q 5 HOH B 23 423 92 HOH HOH . Q 5 HOH B 24 424 101 HOH HOH . Q 5 HOH B 25 425 102 HOH HOH . Q 5 HOH B 26 426 110 HOH HOH . Q 5 HOH B 27 427 112 HOH HOH . Q 5 HOH B 28 428 116 HOH HOH . Q 5 HOH B 29 429 131 HOH HOH . Q 5 HOH B 30 430 132 HOH HOH . Q 5 HOH B 31 431 134 HOH HOH . Q 5 HOH B 32 432 135 HOH HOH . Q 5 HOH B 33 433 136 HOH HOH . Q 5 HOH B 34 434 139 HOH HOH . Q 5 HOH B 35 435 140 HOH HOH . Q 5 HOH B 36 436 148 HOH HOH . Q 5 HOH B 37 437 150 HOH HOH . Q 5 HOH B 38 438 153 HOH HOH . Q 5 HOH B 39 439 156 HOH HOH . Q 5 HOH B 40 440 159 HOH HOH . Q 5 HOH B 41 441 162 HOH HOH . Q 5 HOH B 42 442 167 HOH HOH . Q 5 HOH B 43 443 169 HOH HOH . Q 5 HOH B 44 444 181 HOH HOH . Q 5 HOH B 45 445 184 HOH HOH . Q 5 HOH B 46 446 185 HOH HOH . Q 5 HOH B 47 447 186 HOH HOH . Q 5 HOH B 48 448 189 HOH HOH . Q 5 HOH B 49 449 190 HOH HOH . Q 5 HOH B 50 450 195 HOH HOH . Q 5 HOH B 51 451 199 HOH HOH . R 5 HOH C 1 401 6 HOH HOH . R 5 HOH C 2 402 8 HOH HOH . R 5 HOH C 3 403 9 HOH HOH . R 5 HOH C 4 404 10 HOH HOH . R 5 HOH C 5 405 17 HOH HOH . R 5 HOH C 6 406 18 HOH HOH . R 5 HOH C 7 407 19 HOH HOH . R 5 HOH C 8 408 22 HOH HOH . R 5 HOH C 9 409 23 HOH HOH . R 5 HOH C 10 410 28 HOH HOH . R 5 HOH C 11 411 30 HOH HOH . R 5 HOH C 12 412 32 HOH HOH . R 5 HOH C 13 413 36 HOH HOH . R 5 HOH C 14 414 37 HOH HOH . R 5 HOH C 15 415 38 HOH HOH . R 5 HOH C 16 416 40 HOH HOH . R 5 HOH C 17 417 44 HOH HOH . R 5 HOH C 18 418 45 HOH HOH . R 5 HOH C 19 419 47 HOH HOH . R 5 HOH C 20 420 54 HOH HOH . R 5 HOH C 21 421 55 HOH HOH . R 5 HOH C 22 422 66 HOH HOH . R 5 HOH C 23 423 67 HOH HOH . R 5 HOH C 24 424 71 HOH HOH . R 5 HOH C 25 425 73 HOH HOH . R 5 HOH C 26 426 74 HOH HOH . R 5 HOH C 27 427 79 HOH HOH . R 5 HOH C 28 428 81 HOH HOH . R 5 HOH C 29 429 82 HOH HOH . R 5 HOH C 30 430 95 HOH HOH . R 5 HOH C 31 431 98 HOH HOH . R 5 HOH C 32 432 100 HOH HOH . R 5 HOH C 33 433 107 HOH HOH . R 5 HOH C 34 434 108 HOH HOH . R 5 HOH C 35 435 111 HOH HOH . R 5 HOH C 36 436 113 HOH HOH . R 5 HOH C 37 437 114 HOH HOH . R 5 HOH C 38 438 117 HOH HOH . R 5 HOH C 39 439 118 HOH HOH . R 5 HOH C 40 440 119 HOH HOH . R 5 HOH C 41 441 124 HOH HOH . R 5 HOH C 42 442 143 HOH HOH . R 5 HOH C 43 443 145 HOH HOH . R 5 HOH C 44 444 152 HOH HOH . R 5 HOH C 45 445 157 HOH HOH . R 5 HOH C 46 446 158 HOH HOH . R 5 HOH C 47 447 164 HOH HOH . R 5 HOH C 48 448 165 HOH HOH . R 5 HOH C 49 449 166 HOH HOH . R 5 HOH C 50 450 176 HOH HOH . R 5 HOH C 51 451 182 HOH HOH . R 5 HOH C 52 452 193 HOH HOH . R 5 HOH C 53 453 194 HOH HOH . R 5 HOH C 54 454 197 HOH HOH . S 5 HOH D 1 401 1 HOH HOH . S 5 HOH D 2 402 4 HOH HOH . S 5 HOH D 3 403 13 HOH HOH . S 5 HOH D 4 404 15 HOH HOH . S 5 HOH D 5 405 16 HOH HOH . S 5 HOH D 6 406 20 HOH HOH . S 5 HOH D 7 407 27 HOH HOH . S 5 HOH D 8 408 34 HOH HOH . S 5 HOH D 9 409 35 HOH HOH . S 5 HOH D 10 410 39 HOH HOH . S 5 HOH D 11 411 46 HOH HOH . S 5 HOH D 12 412 50 HOH HOH . S 5 HOH D 13 413 52 HOH HOH . S 5 HOH D 14 414 56 HOH HOH . S 5 HOH D 15 415 57 HOH HOH . S 5 HOH D 16 416 58 HOH HOH . S 5 HOH D 17 417 60 HOH HOH . S 5 HOH D 18 418 61 HOH HOH . S 5 HOH D 19 419 63 HOH HOH . S 5 HOH D 20 420 75 HOH HOH . S 5 HOH D 21 421 77 HOH HOH . S 5 HOH D 22 422 80 HOH HOH . S 5 HOH D 23 423 83 HOH HOH . S 5 HOH D 24 424 85 HOH HOH . S 5 HOH D 25 425 90 HOH HOH . S 5 HOH D 26 426 91 HOH HOH . S 5 HOH D 27 427 93 HOH HOH . S 5 HOH D 28 428 96 HOH HOH . S 5 HOH D 29 429 99 HOH HOH . S 5 HOH D 30 430 104 HOH HOH . S 5 HOH D 31 431 105 HOH HOH . S 5 HOH D 32 432 106 HOH HOH . S 5 HOH D 33 433 109 HOH HOH . S 5 HOH D 34 434 115 HOH HOH . S 5 HOH D 35 435 126 HOH HOH . S 5 HOH D 36 436 127 HOH HOH . S 5 HOH D 37 437 128 HOH HOH . S 5 HOH D 38 438 129 HOH HOH . S 5 HOH D 39 439 130 HOH HOH . S 5 HOH D 40 440 133 HOH HOH . S 5 HOH D 41 441 137 HOH HOH . S 5 HOH D 42 442 138 HOH HOH . S 5 HOH D 43 443 141 HOH HOH . S 5 HOH D 44 444 142 HOH HOH . S 5 HOH D 45 445 144 HOH HOH . S 5 HOH D 46 446 146 HOH HOH . S 5 HOH D 47 447 147 HOH HOH . S 5 HOH D 48 448 149 HOH HOH . S 5 HOH D 49 449 154 HOH HOH . S 5 HOH D 50 450 155 HOH HOH . S 5 HOH D 51 451 161 HOH HOH . S 5 HOH D 52 452 168 HOH HOH . S 5 HOH D 53 453 170 HOH HOH . S 5 HOH D 54 454 173 HOH HOH . S 5 HOH D 55 455 174 HOH HOH . S 5 HOH D 56 456 175 HOH HOH . S 5 HOH D 57 457 177 HOH HOH . S 5 HOH D 58 458 179 HOH HOH . S 5 HOH D 59 459 183 HOH HOH . S 5 HOH D 60 460 187 HOH HOH . S 5 HOH D 61 461 188 HOH HOH . S 5 HOH D 62 462 191 HOH HOH . S 5 HOH D 63 463 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 QSO . A . H 4 -18.606 4.447 10.633 0.53 37.57 ? C2 QSO 302 B 1 HETATM 2 C C2 QSO . B . H 4 -19.237 1.327 7.573 0.47 28.75 ? C2 QSO 302 B 1 HETATM 3 C C4 QSO . A . H 4 -16.616 2.959 10.441 0.53 35.15 ? C4 QSO 302 B 1 HETATM 4 C C4 QSO . B . H 4 -17.042 0.236 8.041 0.47 26.93 ? C4 QSO 302 B 1 HETATM 5 O O4 QSO . A . H 4 -19.58 0.356 6.36 0.53 32.57 ? O4 QSO 302 B 1 HETATM 6 O O4 QSO . B . H 4 -16.064 4.797 11.352 0.47 31.38 ? O4 QSO 302 B 1 HETATM 7 C C4A QSO . A . H 4 -17.347 2.237 9.358 0.53 34.54 ? C4A QSO 302 B 1 HETATM 8 C C4A QSO . B . H 4 -16.737 1.412 8.913 0.47 28.06 ? C4A QSO 302 B 1 HETATM 9 C C8A QSO . A . H 4 -18.709 2.713 8.999 0.53 35.33 ? C8A QSO 302 B 1 HETATM 10 C C8A QSO . B . H 4 -17.764 2.478 9.045 0.47 29.53 ? C8A QSO 302 B 1 HETATM 11 C C7 QSO . A . H 4 -18.862 0.972 7.331 0.53 33.06 ? C7 QSO 302 B 1 HETATM 12 C C7 QSO . B . H 4 -16.292 3.705 10.561 0.47 30.36 ? C7 QSO 302 B 1 HETATM 13 C C6 QSO . A . H 4 -17.597 0.472 7.633 0.53 32.26 ? C6 QSO 302 B 1 HETATM 14 C C6 QSO . B . H 4 -15.3 2.727 10.464 0.47 29.12 ? C6 QSO 302 B 1 HETATM 15 C C5 QSO . A . H 4 -16.81 1.058 8.616 0.53 32.93 ? C5 QSO 302 B 1 HETATM 16 C C5 QSO . B . H 4 -15.467 1.591 9.674 0.47 27.92 ? C5 QSO 302 B 1 HETATM 17 C C8 QSO . A . H 4 -19.416 2.068 7.993 0.53 34.54 ? C8 QSO 302 B 1 HETATM 18 C C8 QSO . B . H 4 -17.504 3.58 9.869 0.47 30.55 ? C8 QSO 302 B 1 HETATM 19 C C3 QSO . A . H 4 -17.311 4.128 11.085 0.53 36.76 ? C3 QSO 302 B 1 HETATM 20 C C3 QSO . B . H 4 -18.381 0.23 7.37 0.47 27.36 ? C3 QSO 302 B 1 HETATM 21 O O1 QSO . A . H 4 -19.241 3.782 9.661 0.53 36.5 ? O1 QSO 302 B 1 HETATM 22 O O1 QSO . B . H 4 -18.955 2.366 8.361 0.47 29.66 ? O1 QSO 302 B 1 HETATM 23 C C1' QSO . A . H 4 -16.726 4.953 12.203 0.53 37.47 ? C1' QSO 302 B 1 HETATM 24 C C1' QSO . B . H 4 -18.831 -0.848 6.424 0.47 26.43 ? C1' QSO 302 B 1 HETATM 25 O O2 QSO . A . H 4 -15.466 2.577 10.759 0.53 34.58 ? O2 QSO 302 B 1 HETATM 26 O O2 QSO . B . H 4 -16.202 -0.685 7.899 0.47 25.59 ? O2 QSO 302 B 1 HETATM 27 C C2' QSO . A . H 4 -17.165 6.264 12.399 0.53 38.93 ? C2' QSO 302 B 1 HETATM 28 C C2' QSO . B . H 4 -19.545 -0.418 5.307 0.47 27.01 ? C2' QSO 302 B 1 HETATM 29 C C3' QSO . A . H 4 -16.658 7.042 13.432 0.53 40.1 ? C3' QSO 302 B 1 HETATM 30 C C3' QSO . B . H 4 -20.006 -1.291 4.333 0.47 26.34 ? C3' QSO 302 B 1 HETATM 31 C C4' QSO . A . H 4 -15.714 6.537 14.319 0.53 39.7 ? C4' QSO 302 B 1 HETATM 32 C C4' QSO . B . H 4 -19.765 -2.644 4.443 0.47 25.16 ? C4' QSO 302 B 1 HETATM 33 C C5' QSO . A . H 4 -15.279 5.221 14.147 0.53 37.93 ? C5' QSO 302 B 1 HETATM 34 C C5' QSO . B . H 4 -19.037 -3.103 5.556 0.47 24.94 ? C5' QSO 302 B 1 HETATM 35 C C6' QSO . A . H 4 -15.783 4.438 13.106 0.53 36.95 ? C6' QSO 302 B 1 HETATM 36 C C6' QSO . B . H 4 -18.576 -2.214 6.539 0.47 25.48 ? C6' QSO 302 B 1 HETATM 37 O O5 QSO . A . H 4 -15.216 7.306 15.354 0.53 41.14 ? O5 QSO 302 B 1 HETATM 38 O O5 QSO . B . H 4 -20.253 -3.431 3.428 0.47 24.26 ? O5 QSO 302 B 1 HETATM 39 O O3 QSO . A . H 4 -15.576 0.547 8.874 0.53 32.67 ? O3 QSO 302 B 1 HETATM 40 O O3 QSO . B . H 4 -14.473 0.663 9.614 0.47 27.19 ? O3 QSO 302 B 1 HETATM 41 C CM QSO . A . H 4 -15.381 8.727 15.475 0.53 42.5 ? CM QSO 302 B 1 HETATM 42 C CM QSO . B . H 4 -20.511 -4.826 3.551 0.47 23.99 ? CM QSO 302 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #