data_4FL2 # _model_server_result.job_id rhEwATxNMlo-oPt_jwEVlQ _model_server_result.datetime_utc '2024-11-30 03:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 4FL2 # _exptl.entry_id 4FL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.84 _cell.angle_gamma 90 _cell.entry_id 4FL2 _cell.length_a 62.562 _cell.length_b 70.722 _cell.length_c 76.369 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 500 A ASN 499 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A OD2 ASP 513 A ASP 512 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 B MG MG . A MG 701 1_555 C O1B ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 B MG MG . A MG 701 1_555 C O2A ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 B MG MG . A MG 701 1_555 D O HOH . A HOH 874 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc6 B MG MG . A MG 701 1_555 D O HOH . A HOH 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4FL2 _atom_sites.fract_transf_matrix[1][1] 0.015984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 1 MG MG . C 3 ANP A 1 702 1 ANP ANP . D 4 HOH A 1 801 1 HOH HOH . D 4 HOH A 2 802 2 HOH HOH . D 4 HOH A 3 803 3 HOH HOH . D 4 HOH A 4 804 4 HOH HOH . D 4 HOH A 5 805 5 HOH HOH . D 4 HOH A 6 806 6 HOH HOH . D 4 HOH A 7 807 7 HOH HOH . D 4 HOH A 8 808 8 HOH HOH . D 4 HOH A 9 809 9 HOH HOH . D 4 HOH A 10 810 10 HOH HOH . D 4 HOH A 11 811 11 HOH HOH . D 4 HOH A 12 812 12 HOH HOH . D 4 HOH A 13 813 13 HOH HOH . D 4 HOH A 14 814 14 HOH HOH . D 4 HOH A 15 815 15 HOH HOH . D 4 HOH A 16 816 16 HOH HOH . D 4 HOH A 17 817 17 HOH HOH . D 4 HOH A 18 818 18 HOH HOH . D 4 HOH A 19 819 19 HOH HOH . D 4 HOH A 20 820 20 HOH HOH . D 4 HOH A 21 821 21 HOH HOH . D 4 HOH A 22 822 22 HOH HOH . D 4 HOH A 23 823 23 HOH HOH . D 4 HOH A 24 824 24 HOH HOH . D 4 HOH A 25 825 25 HOH HOH . D 4 HOH A 26 826 26 HOH HOH . D 4 HOH A 27 827 27 HOH HOH . D 4 HOH A 28 828 28 HOH HOH . D 4 HOH A 29 829 29 HOH HOH . D 4 HOH A 30 830 30 HOH HOH . D 4 HOH A 31 831 31 HOH HOH . D 4 HOH A 32 832 32 HOH HOH . D 4 HOH A 33 833 33 HOH HOH . D 4 HOH A 34 834 34 HOH HOH . D 4 HOH A 35 835 35 HOH HOH . D 4 HOH A 36 836 36 HOH HOH . D 4 HOH A 37 837 37 HOH HOH . D 4 HOH A 38 838 38 HOH HOH . D 4 HOH A 39 839 39 HOH HOH . D 4 HOH A 40 840 40 HOH HOH . D 4 HOH A 41 841 41 HOH HOH . D 4 HOH A 42 842 42 HOH HOH . D 4 HOH A 43 843 43 HOH HOH . D 4 HOH A 44 844 44 HOH HOH . D 4 HOH A 45 845 45 HOH HOH . D 4 HOH A 46 846 46 HOH HOH . D 4 HOH A 47 847 47 HOH HOH . D 4 HOH A 48 848 48 HOH HOH . D 4 HOH A 49 849 49 HOH HOH . D 4 HOH A 50 850 50 HOH HOH . D 4 HOH A 51 851 51 HOH HOH . D 4 HOH A 52 852 52 HOH HOH . D 4 HOH A 53 853 53 HOH HOH . D 4 HOH A 54 854 54 HOH HOH . D 4 HOH A 55 855 55 HOH HOH . D 4 HOH A 56 856 56 HOH HOH . D 4 HOH A 57 857 57 HOH HOH . D 4 HOH A 58 858 58 HOH HOH . D 4 HOH A 59 859 59 HOH HOH . D 4 HOH A 60 860 60 HOH HOH . D 4 HOH A 61 861 61 HOH HOH . D 4 HOH A 62 862 62 HOH HOH . D 4 HOH A 63 863 63 HOH HOH . D 4 HOH A 64 864 64 HOH HOH . D 4 HOH A 65 865 65 HOH HOH . D 4 HOH A 66 866 66 HOH HOH . D 4 HOH A 67 867 67 HOH HOH . D 4 HOH A 68 868 68 HOH HOH . D 4 HOH A 69 869 69 HOH HOH . D 4 HOH A 70 870 70 HOH HOH . D 4 HOH A 71 871 71 HOH HOH . D 4 HOH A 72 872 72 HOH HOH . D 4 HOH A 73 873 73 HOH HOH . D 4 HOH A 74 874 74 HOH HOH . D 4 HOH A 75 875 75 HOH HOH . D 4 HOH A 76 876 76 HOH HOH . D 4 HOH A 77 877 77 HOH HOH . D 4 HOH A 78 878 78 HOH HOH . D 4 HOH A 79 879 79 HOH HOH . D 4 HOH A 80 880 80 HOH HOH . D 4 HOH A 81 881 81 HOH HOH . D 4 HOH A 82 882 82 HOH HOH . D 4 HOH A 83 883 83 HOH HOH . D 4 HOH A 84 884 84 HOH HOH . D 4 HOH A 85 885 85 HOH HOH . D 4 HOH A 86 886 86 HOH HOH . D 4 HOH A 87 887 87 HOH HOH . D 4 HOH A 88 888 88 HOH HOH . D 4 HOH A 89 889 89 HOH HOH . D 4 HOH A 90 890 90 HOH HOH . D 4 HOH A 91 891 91 HOH HOH . D 4 HOH A 92 892 92 HOH HOH . D 4 HOH A 93 893 93 HOH HOH . D 4 HOH A 94 894 94 HOH HOH . D 4 HOH A 95 895 95 HOH HOH . D 4 HOH A 96 896 96 HOH HOH . D 4 HOH A 97 897 97 HOH HOH . D 4 HOH A 98 898 98 HOH HOH . D 4 HOH A 99 899 99 HOH HOH . D 4 HOH A 100 900 100 HOH HOH . D 4 HOH A 101 901 101 HOH HOH . D 4 HOH A 102 902 102 HOH HOH . D 4 HOH A 103 903 103 HOH HOH . D 4 HOH A 104 904 104 HOH HOH . D 4 HOH A 105 905 105 HOH HOH . D 4 HOH A 106 906 106 HOH HOH . D 4 HOH A 107 907 107 HOH HOH . D 4 HOH A 108 908 108 HOH HOH . D 4 HOH A 109 909 109 HOH HOH . D 4 HOH A 110 910 110 HOH HOH . D 4 HOH A 111 911 111 HOH HOH . D 4 HOH A 112 912 112 HOH HOH . D 4 HOH A 113 913 113 HOH HOH . D 4 HOH A 114 914 114 HOH HOH . D 4 HOH A 115 915 115 HOH HOH . D 4 HOH A 116 916 116 HOH HOH . D 4 HOH A 117 917 117 HOH HOH . D 4 HOH A 118 918 118 HOH HOH . D 4 HOH A 119 919 119 HOH HOH . D 4 HOH A 120 920 120 HOH HOH . D 4 HOH A 121 921 121 HOH HOH . D 4 HOH A 122 922 122 HOH HOH . D 4 HOH A 123 923 123 HOH HOH . D 4 HOH A 124 924 124 HOH HOH . D 4 HOH A 125 925 125 HOH HOH . D 4 HOH A 126 926 126 HOH HOH . D 4 HOH A 127 927 127 HOH HOH . D 4 HOH A 128 928 128 HOH HOH . D 4 HOH A 129 929 129 HOH HOH . D 4 HOH A 130 930 130 HOH HOH . D 4 HOH A 131 931 131 HOH HOH . D 4 HOH A 132 932 132 HOH HOH . D 4 HOH A 133 933 133 HOH HOH . D 4 HOH A 134 934 134 HOH HOH . D 4 HOH A 135 935 135 HOH HOH . D 4 HOH A 136 936 136 HOH HOH . D 4 HOH A 137 937 137 HOH HOH . D 4 HOH A 138 938 138 HOH HOH . D 4 HOH A 139 939 139 HOH HOH . D 4 HOH A 140 940 140 HOH HOH . D 4 HOH A 141 941 141 HOH HOH . D 4 HOH A 142 942 142 HOH HOH . D 4 HOH A 143 943 143 HOH HOH . D 4 HOH A 144 944 144 HOH HOH . D 4 HOH A 145 945 145 HOH HOH . D 4 HOH A 146 946 146 HOH HOH . D 4 HOH A 147 947 147 HOH HOH . D 4 HOH A 148 948 148 HOH HOH . D 4 HOH A 149 949 149 HOH HOH . D 4 HOH A 150 950 150 HOH HOH . D 4 HOH A 151 951 151 HOH HOH . D 4 HOH A 152 952 152 HOH HOH . D 4 HOH A 153 953 153 HOH HOH . D 4 HOH A 154 954 154 HOH HOH . D 4 HOH A 155 955 155 HOH HOH . D 4 HOH A 156 956 156 HOH HOH . D 4 HOH A 157 957 157 HOH HOH . D 4 HOH A 158 958 158 HOH HOH . D 4 HOH A 159 959 159 HOH HOH . D 4 HOH A 160 960 160 HOH HOH . D 4 HOH A 161 961 161 HOH HOH . D 4 HOH A 162 962 162 HOH HOH . D 4 HOH A 163 963 163 HOH HOH . D 4 HOH A 164 964 164 HOH HOH . D 4 HOH A 165 965 165 HOH HOH . D 4 HOH A 166 966 166 HOH HOH . D 4 HOH A 167 967 167 HOH HOH . D 4 HOH A 168 968 168 HOH HOH . D 4 HOH A 169 969 169 HOH HOH . D 4 HOH A 170 970 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -33.484 -9.485 -6.145 1 43.79 ? PG ANP 702 A 1 HETATM 2 O O1G ANP . . . C 3 -34.403 -8.714 -5.125 1 46.96 ? O1G ANP 702 A 1 HETATM 3 O O2G ANP . . . C 3 -32.511 -8.512 -6.871 1 40.34 ? O2G ANP 702 A 1 HETATM 4 O O3G ANP . . . C 3 -34.4 -10.201 -7.193 1 47.38 ? O3G ANP 702 A 1 HETATM 5 P PB ANP . . . C 3 -30.987 -10.512 -5.112 1 40.2 ? PB ANP 702 A 1 HETATM 6 O O1B ANP . . . C 3 -30.678 -9.167 -4.393 1 40.53 ? O1B ANP 702 A 1 HETATM 7 O O2B ANP . . . C 3 -30.498 -11.694 -4.279 1 42.79 ? O2B ANP 702 A 1 HETATM 8 N N3B ANP . . . C 3 -32.641 -10.718 -5.323 1 41.76 ? N3B ANP 702 A 1 HETATM 9 P PA ANP . . . C 3 -29.017 -9.566 -7.15 1 40.21 ? PA ANP 702 A 1 HETATM 10 O O1A ANP . . . C 3 -29.109 -9.486 -8.696 1 36.17 ? O1A ANP 702 A 1 HETATM 11 O O2A ANP . . . C 3 -29 -8.169 -6.5 1 38.66 ? O2A ANP 702 A 1 HETATM 12 O O3A ANP . . . C 3 -30.212 -10.462 -6.525 1 41.57 ? O3A ANP 702 A 1 HETATM 13 O O5' ANP . . . C 3 -27.612 -10.257 -6.836 1 44.15 ? O5' ANP 702 A 1 HETATM 14 C C5' ANP . . . C 3 -27.434 -11.664 -6.896 1 39.11 ? C5' ANP 702 A 1 HETATM 15 C C4' ANP . . . C 3 -26.051 -11.99 -6.387 1 37.15 ? C4' ANP 702 A 1 HETATM 16 O O4' ANP . . . C 3 -25.071 -11.206 -7.094 1 37.44 ? O4' ANP 702 A 1 HETATM 17 C C3' ANP . . . C 3 -25.899 -11.602 -4.905 1 37.21 ? C3' ANP 702 A 1 HETATM 18 O O3' ANP . . . C 3 -26.44 -12.604 -4.048 1 38.5 ? O3' ANP 702 A 1 HETATM 19 C C2' ANP . . . C 3 -24.375 -11.537 -4.797 1 38.76 ? C2' ANP 702 A 1 HETATM 20 O O2' ANP . . . C 3 -23.787 -12.85 -4.699 1 40.6 ? O2' ANP 702 A 1 HETATM 21 C C1' ANP . . . C 3 -24.003 -10.905 -6.162 1 37.79 ? C1' ANP 702 A 1 HETATM 22 N N9 ANP . . . C 3 -23.77 -9.452 -6.066 1 35.8 ? N9 ANP 702 A 1 HETATM 23 C C8 ANP . . . C 3 -24.664 -8.425 -6.294 1 34.09 ? C8 ANP 702 A 1 HETATM 24 N N7 ANP . . . C 3 -24.066 -7.281 -6.14 1 32.1 ? N7 ANP 702 A 1 HETATM 25 C C5 ANP . . . C 3 -22.769 -7.496 -5.793 1 31.13 ? C5 ANP 702 A 1 HETATM 26 C C6 ANP . . . C 3 -21.656 -6.689 -5.454 1 32.17 ? C6 ANP 702 A 1 HETATM 27 N N6 ANP . . . C 3 -21.691 -5.295 -5.487 1 31.1 ? N6 ANP 702 A 1 HETATM 28 N N1 ANP . . . C 3 -20.525 -7.302 -5.097 1 32.17 ? N1 ANP 702 A 1 HETATM 29 C C2 ANP . . . C 3 -20.384 -8.606 -5.077 1 31.29 ? C2 ANP 702 A 1 HETATM 30 N N3 ANP . . . C 3 -21.389 -9.389 -5.38 1 35.6 ? N3 ANP 702 A 1 HETATM 31 C C4 ANP . . . C 3 -22.579 -8.891 -5.728 1 33.22 ? C4 ANP 702 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #