data_4FM8
#
_model_server_result.job_id            Qx9GL2kJa_Zj0udw1PfNhg 
_model_server_result.datetime_utc      '2024-10-18 06:13:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    4FM8 
#
_exptl.entry_id    4FM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4FM8 
_cell.length_a            74.719 
_cell.length_b            103.262 
_cell.length_c            98.619 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 159 A CYS 155 1_555 A SG CYS 363 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 221 A CYS 217 1_555 A SG CYS 386 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 273 A CYS 269 1_555 A SG CYS 323 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A ND1 HIS 400 A HIS 396 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc2 A NE2 HIS 402 A HIS 398 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     4FM8 
_atom_sites.fract_transf_matrix[1][1]    0.013383 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0UQ A 1 501 426 0UQ MOL . 
C 3 ZN A 1 502 2 ZN ZN . 
D 4 EDO A 1 503 1 EDO EDO . 
E 5 HOH A 1 601 1 HOH HOH . 
E 5 HOH A 2 602 2 HOH HOH . 
E 5 HOH A 3 603 3 HOH HOH . 
E 5 HOH A 4 604 4 HOH HOH . 
E 5 HOH A 5 605 7 HOH HOH . 
E 5 HOH A 6 606 8 HOH HOH . 
E 5 HOH A 7 607 9 HOH HOH . 
E 5 HOH A 8 608 10 HOH HOH . 
E 5 HOH A 9 609 11 HOH HOH . 
E 5 HOH A 10 610 12 HOH HOH . 
E 5 HOH A 11 611 13 HOH HOH . 
E 5 HOH A 12 612 14 HOH HOH . 
E 5 HOH A 13 613 15 HOH HOH . 
E 5 HOH A 14 614 16 HOH HOH . 
E 5 HOH A 15 615 17 HOH HOH . 
E 5 HOH A 16 616 18 HOH HOH . 
E 5 HOH A 17 617 19 HOH HOH . 
E 5 HOH A 18 618 20 HOH HOH . 
E 5 HOH A 19 619 21 HOH HOH . 
E 5 HOH A 20 620 22 HOH HOH . 
E 5 HOH A 21 621 23 HOH HOH . 
E 5 HOH A 22 622 24 HOH HOH . 
E 5 HOH A 23 623 25 HOH HOH . 
E 5 HOH A 24 624 26 HOH HOH . 
E 5 HOH A 25 625 27 HOH HOH . 
E 5 HOH A 26 626 28 HOH HOH . 
E 5 HOH A 27 627 31 HOH HOH . 
E 5 HOH A 28 628 32 HOH HOH . 
E 5 HOH A 29 629 33 HOH HOH . 
E 5 HOH A 30 630 34 HOH HOH . 
E 5 HOH A 31 631 35 HOH HOH . 
E 5 HOH A 32 632 36 HOH HOH . 
E 5 HOH A 33 633 37 HOH HOH . 
E 5 HOH A 34 634 38 HOH HOH . 
E 5 HOH A 35 635 39 HOH HOH . 
E 5 HOH A 36 636 40 HOH HOH . 
E 5 HOH A 37 637 41 HOH HOH . 
E 5 HOH A 38 638 42 HOH HOH . 
E 5 HOH A 39 639 43 HOH HOH . 
E 5 HOH A 40 640 44 HOH HOH . 
E 5 HOH A 41 641 45 HOH HOH . 
E 5 HOH A 42 642 46 HOH HOH . 
E 5 HOH A 43 643 47 HOH HOH . 
E 5 HOH A 44 644 48 HOH HOH . 
E 5 HOH A 45 645 49 HOH HOH . 
E 5 HOH A 46 646 50 HOH HOH . 
E 5 HOH A 47 647 51 HOH HOH . 
E 5 HOH A 48 648 52 HOH HOH . 
E 5 HOH A 49 649 53 HOH HOH . 
E 5 HOH A 50 650 54 HOH HOH . 
E 5 HOH A 51 651 55 HOH HOH . 
E 5 HOH A 52 652 56 HOH HOH . 
E 5 HOH A 53 653 2 HOH HOH . 
E 5 HOH A 54 654 5 HOH HOH . 
E 5 HOH A 55 655 6 HOH HOH . 
E 5 HOH A 56 656 8 HOH HOH . 
E 5 HOH A 57 657 9 HOH HOH . 
E 5 HOH A 58 658 10 HOH HOH . 
E 5 HOH A 59 659 12 HOH HOH . 
E 5 HOH A 60 660 13 HOH HOH . 
E 5 HOH A 61 661 14 HOH HOH . 
E 5 HOH A 62 662 15 HOH HOH . 
E 5 HOH A 63 663 16 HOH HOH . 
E 5 HOH A 64 664 1 HOH HOH . 
E 5 HOH A 65 665 5 HOH HOH . 
E 5 HOH A 66 666 7 HOH HOH . 
E 5 HOH A 67 667 8 HOH HOH . 
E 5 HOH A 68 668 10 HOH HOH . 
E 5 HOH A 69 669 1 HOH HOH . 
E 5 HOH A 70 670 7 HOH HOH . 
E 5 HOH A 71 671 8 HOH HOH . 
E 5 HOH A 72 672 9 HOH HOH . 
E 5 HOH A 73 673 13 HOH HOH . 
E 5 HOH A 74 674 14 HOH HOH . 
E 5 HOH A 75 675 15 HOH HOH . 
E 5 HOH A 76 676 16 HOH HOH . 
E 5 HOH A 77 677 18 HOH HOH . 
E 5 HOH A 78 678 19 HOH HOH . 
E 5 HOH A 79 679 21 HOH HOH . 
E 5 HOH A 80 680 24 HOH HOH . 
E 5 HOH A 81 681 25 HOH HOH . 
E 5 HOH A 82 682 26 HOH HOH . 
E 5 HOH A 83 683 28 HOH HOH . 
E 5 HOH A 84 684 29 HOH HOH . 
E 5 HOH A 85 685 31 HOH HOH . 
E 5 HOH A 86 686 33 HOH HOH . 
E 5 HOH A 87 687 34 HOH HOH . 
E 5 HOH A 88 688 2 HOH HOH . 
E 5 HOH A 89 689 3 HOH HOH . 
E 5 HOH A 90 690 4 HOH HOH . 
E 5 HOH A 91 691 6 HOH HOH . 
E 5 HOH A 92 692 7 HOH HOH . 
E 5 HOH A 93 693 8 HOH HOH . 
E 5 HOH A 94 694 9 HOH HOH . 
E 5 HOH A 95 695 10 HOH HOH . 
E 5 HOH A 96 696 14 HOH HOH . 
E 5 HOH A 97 697 15 HOH HOH . 
E 5 HOH A 98 698 16 HOH HOH . 
E 5 HOH A 99 699 17 HOH HOH . 
E 5 HOH A 100 700 18 HOH HOH . 
E 5 HOH A 101 701 19 HOH HOH . 
E 5 HOH A 102 702 23 HOH HOH . 
E 5 HOH A 103 703 24 HOH HOH . 
E 5 HOH A 104 704 1 HOH HOH . 
E 5 HOH A 105 705 7 HOH HOH . 
E 5 HOH A 106 706 11 HOH HOH . 
E 5 HOH A 107 707 13 HOH HOH . 
E 5 HOH A 108 708 14 HOH HOH . 
E 5 HOH A 109 709 6 HOH HOH . 
E 5 HOH A 110 710 7 HOH HOH . 
E 5 HOH A 111 711 8 HOH HOH . 
E 5 HOH A 112 712 1 HOH HOH . 
E 5 HOH A 113 713 2 HOH HOH . 
E 5 HOH A 114 714 3 HOH HOH . 
E 5 HOH A 115 715 4 HOH HOH . 
E 5 HOH A 116 716 5 HOH HOH . 
E 5 HOH A 117 717 6 HOH HOH . 
E 5 HOH A 118 718 7 HOH HOH . 
E 5 HOH A 119 719 9 HOH HOH . 
E 5 HOH A 120 720 10 HOH HOH . 
E 5 HOH A 121 721 11 HOH HOH . 
E 5 HOH A 122 722 12 HOH HOH . 
E 5 HOH A 123 723 13 HOH HOH . 
E 5 HOH A 124 724 14 HOH HOH . 
E 5 HOH A 125 725 15 HOH HOH . 
E 5 HOH A 126 726 16 HOH HOH . 
E 5 HOH A 127 727 17 HOH HOH . 
E 5 HOH A 128 728 18 HOH HOH . 
E 5 HOH A 129 729 20 HOH HOH . 
E 5 HOH A 130 730 21 HOH HOH . 
E 5 HOH A 131 731 22 HOH HOH . 
E 5 HOH A 132 732 23 HOH HOH . 
E 5 HOH A 133 733 24 HOH HOH . 
E 5 HOH A 134 734 25 HOH HOH . 
E 5 HOH A 135 735 26 HOH HOH . 
E 5 HOH A 136 736 27 HOH HOH . 
E 5 HOH A 137 737 28 HOH HOH . 
E 5 HOH A 138 738 29 HOH HOH . 
E 5 HOH A 139 739 30 HOH HOH . 
E 5 HOH A 140 740 31 HOH HOH . 
E 5 HOH A 141 741 32 HOH HOH . 
E 5 HOH A 142 742 33 HOH HOH . 
E 5 HOH A 143 743 34 HOH HOH . 
E 5 HOH A 144 744 35 HOH HOH . 
E 5 HOH A 145 745 36 HOH HOH . 
E 5 HOH A 146 746 37 HOH HOH . 
E 5 HOH A 147 747 38 HOH HOH . 
E 5 HOH A 148 748 39 HOH HOH . 
E 5 HOH A 149 749 40 HOH HOH . 
E 5 HOH A 150 750 41 HOH HOH . 
E 5 HOH A 151 751 42 HOH HOH . 
E 5 HOH A 152 752 43 HOH HOH . 
E 5 HOH A 153 753 44 HOH HOH . 
E 5 HOH A 154 754 45 HOH HOH . 
E 5 HOH A 155 755 46 HOH HOH . 
E 5 HOH A 156 756 47 HOH HOH . 
E 5 HOH A 157 757 48 HOH HOH . 
E 5 HOH A 158 758 49 HOH HOH . 
E 5 HOH A 159 759 50 HOH HOH . 
E 5 HOH A 160 760 51 HOH HOH . 
E 5 HOH A 161 761 52 HOH HOH . 
E 5 HOH A 162 762 53 HOH HOH . 
E 5 HOH A 163 763 54 HOH HOH . 
E 5 HOH A 164 764 55 HOH HOH . 
E 5 HOH A 165 765 56 HOH HOH . 
E 5 HOH A 166 766 57 HOH HOH . 
E 5 HOH A 167 767 58 HOH HOH . 
E 5 HOH A 168 768 60 HOH HOH . 
E 5 HOH A 169 769 61 HOH HOH . 
E 5 HOH A 170 770 62 HOH HOH . 
E 5 HOH A 171 771 63 HOH HOH . 
E 5 HOH A 172 772 64 HOH HOH . 
E 5 HOH A 173 773 65 HOH HOH . 
E 5 HOH A 174 774 66 HOH HOH . 
E 5 HOH A 175 775 67 HOH HOH . 
E 5 HOH A 176 776 68 HOH HOH . 
E 5 HOH A 177 777 69 HOH HOH . 
E 5 HOH A 178 778 70 HOH HOH . 
E 5 HOH A 179 779 71 HOH HOH . 
E 5 HOH A 180 780 72 HOH HOH . 
E 5 HOH A 181 781 73 HOH HOH . 
E 5 HOH A 182 782 74 HOH HOH . 
E 5 HOH A 183 783 75 HOH HOH . 
E 5 HOH A 184 784 76 HOH HOH . 
E 5 HOH A 185 785 77 HOH HOH . 
E 5 HOH A 186 786 78 HOH HOH . 
E 5 HOH A 187 787 79 HOH HOH . 
E 5 HOH A 188 788 80 HOH HOH . 
E 5 HOH A 189 789 81 HOH HOH . 
E 5 HOH A 190 790 82 HOH HOH . 
E 5 HOH A 191 791 83 HOH HOH . 
E 5 HOH A 192 792 84 HOH HOH . 
E 5 HOH A 193 793 85 HOH HOH . 
E 5 HOH A 194 794 86 HOH HOH . 
E 5 HOH A 195 795 87 HOH HOH . 
E 5 HOH A 196 796 88 HOH HOH . 
E 5 HOH A 197 797 89 HOH HOH . 
E 5 HOH A 198 798 90 HOH HOH . 
E 5 HOH A 199 799 91 HOH HOH . 
E 5 HOH A 200 800 92 HOH HOH . 
E 5 HOH A 201 801 93 HOH HOH . 
E 5 HOH A 202 802 94 HOH HOH . 
E 5 HOH A 203 803 95 HOH HOH . 
E 5 HOH A 204 804 96 HOH HOH . 
E 5 HOH A 205 805 97 HOH HOH . 
E 5 HOH A 206 806 98 HOH HOH . 
E 5 HOH A 207 807 99 HOH HOH . 
E 5 HOH A 208 808 100 HOH HOH . 
E 5 HOH A 209 809 101 HOH HOH . 
E 5 HOH A 210 810 102 HOH HOH . 
E 5 HOH A 211 811 104 HOH HOH . 
E 5 HOH A 212 812 105 HOH HOH . 
E 5 HOH A 213 813 106 HOH HOH . 
E 5 HOH A 214 814 108 HOH HOH . 
E 5 HOH A 215 815 109 HOH HOH . 
E 5 HOH A 216 816 110 HOH HOH . 
E 5 HOH A 217 817 111 HOH HOH . 
E 5 HOH A 218 818 112 HOH HOH . 
E 5 HOH A 219 819 113 HOH HOH . 
E 5 HOH A 220 820 114 HOH HOH . 
E 5 HOH A 221 821 115 HOH HOH . 
E 5 HOH A 222 822 117 HOH HOH . 
E 5 HOH A 223 823 118 HOH HOH . 
E 5 HOH A 224 824 119 HOH HOH . 
E 5 HOH A 225 825 121 HOH HOH . 
E 5 HOH A 226 826 122 HOH HOH . 
E 5 HOH A 227 827 123 HOH HOH . 
E 5 HOH A 228 828 124 HOH HOH . 
E 5 HOH A 229 829 125 HOH HOH . 
E 5 HOH A 230 830 126 HOH HOH . 
E 5 HOH A 231 831 127 HOH HOH . 
E 5 HOH A 232 832 128 HOH HOH . 
E 5 HOH A 233 833 129 HOH HOH . 
E 5 HOH A 234 834 130 HOH HOH . 
E 5 HOH A 235 835 131 HOH HOH . 
E 5 HOH A 236 836 132 HOH HOH . 
E 5 HOH A 237 837 133 HOH HOH . 
E 5 HOH A 238 838 134 HOH HOH . 
E 5 HOH A 239 839 135 HOH HOH . 
E 5 HOH A 240 840 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 33.982 48.155 42.558 1 38.46 ? C1 EDO 503 A 1 
HETATM 2 O O1 EDO . . . D 4 32.764 48.125 43.23 1 36.49 ? O1 EDO 503 A 1 
HETATM 3 C C2 EDO . . . D 4 33.716 48.378 41.081 1 43.41 ? C2 EDO 503 A 1 
HETATM 4 O O2 EDO . . . D 4 33.285 49.7 40.936 1 47.47 ? O2 EDO 503 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           4 
#