data_4FM9 # _model_server_result.job_id lBYBL6KuAx3M-Ya3PuSq5w _model_server_result.datetime_utc '2024-12-02 13:14:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4FM9 # _exptl.entry_id 4FM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FM9 _cell.length_a 85.918 _cell.length_b 215.081 _cell.length_c 128.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 85.918 0 64.325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 113 A ASP 543 1_555 D MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 D MG MG . A MG 1201 1_555 G O HOH . A HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 D MG MG . A MG 1201 1_555 G O HOH . A HOH 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 D MG MG . A MG 1201 1_555 H O HOH . C HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 C DG 1 1_555 C N3 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 C DG 1 1_555 C O2 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 C DG 1 1_555 C N4 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 C DA 2 1_555 C N3 DT 16 D DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 C DA 2 1_555 C O4 DT 16 D DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 C DG 3 1_555 C N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 C DG 3 1_555 C O2 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 C DG 3 1_555 C N4 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 4 C DG 4 1_555 C N3 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 4 C DG 4 1_555 C O2 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 4 C DG 4 1_555 C N4 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 C DA 5 1_555 C N3 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 C DA 5 1_555 C O4 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 6 C DT 6 1_555 C N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 6 C DT 6 1_555 C N6 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 7 C DG 7 1_555 C N3 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 7 C DG 7 1_555 C O2 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 7 C DG 7 1_555 C N4 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 8 C DA 8 1_555 C N3 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 8 C DA 8 1_555 C O4 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DC 9 C DC 9 1_555 C N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 DC 9 C DC 9 1_555 C O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 DC 9 C DC 9 1_555 C N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 10 C DG 10 1_555 C N3 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 10 C DG 10 1_555 C O2 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 10 C DG 10 1_555 C N4 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N1 DA 11 C DA 11 1_555 C N3 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N6 DA 11 C DA 11 1_555 C O4 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog29 B N3 DT 12 C DT 12 1_555 C N1 DA 6 D DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N1 DG 13 C DG 13 1_555 C N3 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N2 DG 13 C DG 13 1_555 C O2 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O6 DG 13 C DG 13 1_555 C N4 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N3 DC 1 D DC 1 1_555 C N1 DG 4 D DG 4 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N4 DC 1 D DC 1 1_555 C O6 DG 4 D DG 4 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O2 DC 1 D DC 1 1_555 C N2 DG 4 D DG 4 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N1 DG 2 D DG 2 1_555 C N3 DC 3 D DC 3 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N2 DG 2 D DG 2 1_555 C O2 DC 3 D DC 3 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O6 DG 2 D DG 2 1_555 C N4 DC 3 D DC 3 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C N3 DC 3 D DC 3 1_555 C N1 DG 2 D DG 2 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N4 DC 3 D DC 3 1_555 C O6 DG 2 D DG 2 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C O2 DC 3 D DC 3 1_555 C N2 DG 2 D DG 2 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C N1 DG 4 D DG 4 1_555 C N3 DC 1 D DC 1 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N2 DG 4 D DG 4 1_555 C O2 DC 1 D DC 1 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C O6 DG 4 D DG 4 1_555 C N4 DC 1 D DC 1 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FM9 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1201 1 MG MG . E 5 GOL A 1 1202 3968 GOL GOL . F 4 MG C 1 101 2 MG MG . G 6 HOH A 1 1301 1 HOH HOH . G 6 HOH A 2 1302 2 HOH HOH . G 6 HOH A 3 1303 3 HOH HOH . G 6 HOH A 4 1304 4 HOH HOH . G 6 HOH A 5 1305 6 HOH HOH . G 6 HOH A 6 1306 7 HOH HOH . G 6 HOH A 7 1307 8 HOH HOH . G 6 HOH A 8 1308 9 HOH HOH . G 6 HOH A 9 1309 10 HOH HOH . G 6 HOH A 10 1310 13 HOH HOH . G 6 HOH A 11 1311 14 HOH HOH . G 6 HOH A 12 1312 17 HOH HOH . G 6 HOH A 13 1313 18 HOH HOH . G 6 HOH A 14 1314 19 HOH HOH . G 6 HOH A 15 1315 21 HOH HOH . G 6 HOH A 16 1316 22 HOH HOH . G 6 HOH A 17 1317 23 HOH HOH . G 6 HOH A 18 1318 24 HOH HOH . G 6 HOH A 19 1319 26 HOH HOH . G 6 HOH A 20 1320 27 HOH HOH . G 6 HOH A 21 1321 28 HOH HOH . G 6 HOH A 22 1322 29 HOH HOH . G 6 HOH A 23 1323 31 HOH HOH . G 6 HOH A 24 1324 32 HOH HOH . G 6 HOH A 25 1325 34 HOH HOH . G 6 HOH A 26 1326 37 HOH HOH . G 6 HOH A 27 1327 39 HOH HOH . G 6 HOH A 28 1328 40 HOH HOH . G 6 HOH A 29 1329 42 HOH HOH . G 6 HOH A 30 1330 44 HOH HOH . G 6 HOH A 31 1331 45 HOH HOH . G 6 HOH A 32 1332 46 HOH HOH . H 6 HOH C 1 201 12 HOH HOH . H 6 HOH C 2 202 15 HOH HOH . H 6 HOH C 3 203 16 HOH HOH . H 6 HOH C 4 204 20 HOH HOH . H 6 HOH C 5 205 35 HOH HOH . H 6 HOH C 6 206 36 HOH HOH . H 6 HOH C 7 207 41 HOH HOH . H 6 HOH C 8 208 43 HOH HOH . I 6 HOH D 1 101 5 HOH HOH . I 6 HOH D 2 102 11 HOH HOH . I 6 HOH D 3 103 33 HOH HOH . I 6 HOH D 4 104 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 31.435 _atom_site.Cartn_y 19.949 _atom_site.Cartn_z 12.605 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #