data_4FMD # _model_server_result.job_id c8IS7QMSPlOjIGg86GAPBQ _model_server_result.datetime_utc '2024-11-05 01:15:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":203}' # _entry.id 4FMD # _exptl.entry_id 4FMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FMD _cell.length_a 106.568 _cell.length_b 153.221 _cell.length_c 230.805 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,R,S 1 1 C,D,J,K,L,M,T,U 2 1 E,F,N,O,P,Q,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 M N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 R O HOH . A HOH 401 1_555 G AL AF3 . B AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc2 B OG SER 20 B SER 25 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B OG1 THR 38 B THR 43 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 G AL AF3 . B AF3 201 1_555 H O2B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 H O3B GDP . B GDP 202 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 I MG MG . B MG 203 1_555 S O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc7 I MG MG . B MG 203 1_555 S O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 T O HOH . C HOH 501 1_555 K AL AF3 . D AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc9 D OG SER 20 D SER 25 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D OG1 THR 38 D THR 43 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc11 K AL AF3 . D AF3 201 1_555 L O3B GDP . D GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 L O3B GDP . D GDP 202 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc13 L O1B GDP . D GDP 202 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc14 M MG MG . D MG 203 1_555 U O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc15 M MG MG . D MG 203 1_555 U O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc16 V O HOH . E HOH 501 1_555 O AL AF3 . F AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc17 F OG SER 13 F SER 25 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc18 F OG1 THR 31 F THR 43 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc19 O AL AF3 . F AF3 201 1_555 P O1B GDP . F GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc20 P O3B GDP . F GDP 202 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc21 Q MG MG . F MG 203 1_555 W O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FMD _atom_sites.fract_transf_matrix[1][1] 0.009384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 AF3 B 1 201 506 AF3 AF3 . H 5 GDP B 1 202 501 GDP GDP . I 6 MG B 1 203 502 MG MG . J 7 PGE C 1 401 1 PGE PEG . K 4 AF3 D 1 201 506 AF3 AF3 . L 5 GDP D 1 202 501 GDP GDP . M 6 MG D 1 203 502 MG MG . N 8 PEG E 1 401 2 PEG PEG . O 4 AF3 F 1 201 505 AF3 AF3 . P 5 GDP F 1 202 501 GDP GDP . Q 6 MG F 1 203 502 MG MG . R 9 HOH A 1 401 505 HOH HOH . S 9 HOH B 1 301 503 HOH HOH . S 9 HOH B 2 302 504 HOH HOH . T 9 HOH C 1 501 501 HOH HOH . U 9 HOH D 1 301 503 HOH HOH . U 9 HOH D 2 302 504 HOH HOH . V 9 HOH E 1 501 501 HOH HOH . W 9 HOH F 1 301 503 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 6 _atom_site.Cartn_x -13.413 _atom_site.Cartn_y -46.709 _atom_site.Cartn_z -15.485 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #