data_4FMD # _model_server_result.job_id 5hsDEWsaYzZGdYNcEmtRgw _model_server_result.datetime_utc '2024-11-25 13:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 4FMD # _exptl.entry_id 4FMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FMD _cell.length_a 106.568 _cell.length_b 153.221 _cell.length_c 230.805 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,R,S 1 1 C,D,J,K,L,M,T,U 2 1 E,F,N,O,P,Q,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 R O HOH . A HOH 401 1_555 G AL AF3 . B AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc2 B OG SER 20 B SER 25 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B OG1 THR 38 B THR 43 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 G AL AF3 . B AF3 201 1_555 H O2B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 H O3B GDP . B GDP 202 1_555 I MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 I MG MG . B MG 203 1_555 S O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc7 I MG MG . B MG 203 1_555 S O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 T O HOH . C HOH 501 1_555 K AL AF3 . D AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc9 D OG SER 20 D SER 25 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D OG1 THR 38 D THR 43 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc11 K AL AF3 . D AF3 201 1_555 L O3B GDP . D GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 L O3B GDP . D GDP 202 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc13 L O1B GDP . D GDP 202 1_555 M MG MG . D MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc14 M MG MG . D MG 203 1_555 U O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc15 M MG MG . D MG 203 1_555 U O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc16 V O HOH . E HOH 501 1_555 O AL AF3 . F AF3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc17 F OG SER 13 F SER 25 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc18 F OG1 THR 31 F THR 43 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc19 O AL AF3 . F AF3 201 1_555 P O1B GDP . F GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc20 P O3B GDP . F GDP 202 1_555 Q MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc21 Q MG MG . F MG 203 1_555 W O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 301 n n C1 C2 PGE sing 302 n n C1 H1 PGE sing 303 n n C1 H12 PGE sing 304 n n O1 HO1 PGE sing 305 n n C2 O2 PGE sing 306 n n C2 H2 PGE sing 307 n n C2 H22 PGE sing 308 n n O2 C3 PGE sing 309 n n C3 C4 PGE sing 310 n n C3 H3 PGE sing 311 n n C3 H32 PGE sing 312 n n C4 O3 PGE sing 313 n n C4 H4 PGE sing 314 n n C4 H42 PGE sing 315 n n O4 C6 PGE sing 316 n n O4 HO4 PGE sing 317 n n C6 C5 PGE sing 318 n n C6 H6 PGE sing 319 n n C6 H62 PGE sing 320 n n C5 O3 PGE sing 321 n n C5 H5 PGE sing 322 n n C5 H52 PGE sing 323 n n # _atom_sites.entry_id 4FMD _atom_sites.fract_transf_matrix[1][1] 0.009384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 AF3 B 1 201 506 AF3 AF3 . H 5 GDP B 1 202 501 GDP GDP . I 6 MG B 1 203 502 MG MG . J 7 PGE C 1 401 1 PGE PEG . K 4 AF3 D 1 201 506 AF3 AF3 . L 5 GDP D 1 202 501 GDP GDP . M 6 MG D 1 203 502 MG MG . N 8 PEG E 1 401 2 PEG PEG . O 4 AF3 F 1 201 505 AF3 AF3 . P 5 GDP F 1 202 501 GDP GDP . Q 6 MG F 1 203 502 MG MG . R 9 HOH A 1 401 505 HOH HOH . S 9 HOH B 1 301 503 HOH HOH . S 9 HOH B 2 302 504 HOH HOH . T 9 HOH C 1 501 501 HOH HOH . U 9 HOH D 1 301 503 HOH HOH . U 9 HOH D 2 302 504 HOH HOH . V 9 HOH E 1 501 501 HOH HOH . W 9 HOH F 1 301 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . J 7 -37.089 -38.5 41.944 1 67.44 ? C1 PGE 401 C 1 HETATM 2 O O1 PGE . . . J 7 -36.228 -38.802 43.053 1 64.75 ? O1 PGE 401 C 1 HETATM 3 C C2 PGE . . . J 7 -36.433 -37.458 41.033 1 70.4 ? C2 PGE 401 C 1 HETATM 4 O O2 PGE . . . J 7 -35.84 -37.93 39.761 1 74.1 ? O2 PGE 401 C 1 HETATM 5 C C3 PGE . . . J 7 -34.371 -37.819 39.79 1 73.84 ? C3 PGE 401 C 1 HETATM 6 C C4 PGE . . . J 7 -33.654 -39.158 39.49 1 73.34 ? C4 PGE 401 C 1 HETATM 7 O O4 PGE . . . J 7 -33.524 -39.752 35.47 1 65.09 ? O4 PGE 401 C 1 HETATM 8 C C6 PGE . . . J 7 -32.343 -40.25 36.157 1 69.61 ? C6 PGE 401 C 1 HETATM 9 C C5 PGE . . . J 7 -32.442 -40.31 37.707 1 69.78 ? C5 PGE 401 C 1 HETATM 10 O O3 PGE . . . J 7 -33.203 -39.149 38.11 1 72.93 ? O3 PGE 401 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 10 #