data_4FMQ # _model_server_result.job_id ScElBIA3XvgNKJQGx0A2Fw _model_server_result.datetime_utc '2024-11-05 12:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4FMQ # _exptl.entry_id 4FMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FMQ _cell.length_a 45.032 _cell.length_b 65.657 _cell.length_c 117.228 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4FMQ _atom_sites.fract_transf_matrix[1][1] 0.022206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 401 1 ANP ANP . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 58 HOH HOH . D 4 HOH A 58 558 59 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 61 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 65 HOH HOH . D 4 HOH A 65 565 66 HOH HOH . D 4 HOH A 66 566 67 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 69 HOH HOH . D 4 HOH A 69 569 70 HOH HOH . D 4 HOH A 70 570 71 HOH HOH . D 4 HOH A 71 571 72 HOH HOH . D 4 HOH A 72 572 73 HOH HOH . D 4 HOH A 73 573 74 HOH HOH . D 4 HOH A 74 574 75 HOH HOH . D 4 HOH A 75 575 76 HOH HOH . D 4 HOH A 76 576 77 HOH HOH . D 4 HOH A 77 577 78 HOH HOH . D 4 HOH A 78 578 79 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 81 HOH HOH . D 4 HOH A 81 581 82 HOH HOH . D 4 HOH A 82 582 83 HOH HOH . D 4 HOH A 83 583 84 HOH HOH . D 4 HOH A 84 584 85 HOH HOH . D 4 HOH A 85 585 86 HOH HOH . D 4 HOH A 86 586 87 HOH HOH . D 4 HOH A 87 587 88 HOH HOH . D 4 HOH A 88 588 89 HOH HOH . D 4 HOH A 89 589 90 HOH HOH . D 4 HOH A 90 590 91 HOH HOH . D 4 HOH A 91 591 92 HOH HOH . D 4 HOH A 92 592 93 HOH HOH . D 4 HOH A 93 593 94 HOH HOH . D 4 HOH A 94 594 95 HOH HOH . D 4 HOH A 95 595 96 HOH HOH . D 4 HOH A 96 596 97 HOH HOH . D 4 HOH A 97 597 98 HOH HOH . D 4 HOH A 98 598 99 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 101 HOH HOH . D 4 HOH A 101 601 102 HOH HOH . D 4 HOH A 102 602 103 HOH HOH . D 4 HOH A 103 603 104 HOH HOH . D 4 HOH A 104 604 105 HOH HOH . D 4 HOH A 105 605 106 HOH HOH . D 4 HOH A 106 606 107 HOH HOH . D 4 HOH A 107 607 108 HOH HOH . D 4 HOH A 108 608 109 HOH HOH . D 4 HOH A 109 609 110 HOH HOH . D 4 HOH A 110 610 111 HOH HOH . D 4 HOH A 111 611 112 HOH HOH . D 4 HOH A 112 612 113 HOH HOH . D 4 HOH A 113 613 114 HOH HOH . D 4 HOH A 114 614 115 HOH HOH . D 4 HOH A 115 615 116 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 118 HOH HOH . D 4 HOH A 118 618 119 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 121 HOH HOH . D 4 HOH A 121 621 122 HOH HOH . D 4 HOH A 122 622 123 HOH HOH . D 4 HOH A 123 623 124 HOH HOH . D 4 HOH A 124 624 125 HOH HOH . D 4 HOH A 125 625 126 HOH HOH . D 4 HOH A 126 626 127 HOH HOH . D 4 HOH A 127 627 128 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 130 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 132 HOH HOH . D 4 HOH A 132 632 133 HOH HOH . D 4 HOH A 133 633 134 HOH HOH . D 4 HOH A 134 634 135 HOH HOH . D 4 HOH A 135 635 136 HOH HOH . D 4 HOH A 136 636 137 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 139 HOH HOH . D 4 HOH A 139 639 140 HOH HOH . D 4 HOH A 140 640 141 HOH HOH . D 4 HOH A 141 641 142 HOH HOH . D 4 HOH A 142 642 143 HOH HOH . D 4 HOH A 143 643 144 HOH HOH . D 4 HOH A 144 644 145 HOH HOH . D 4 HOH A 145 645 146 HOH HOH . D 4 HOH A 146 646 147 HOH HOH . D 4 HOH A 147 647 148 HOH HOH . D 4 HOH A 148 648 149 HOH HOH . D 4 HOH A 149 649 150 HOH HOH . D 4 HOH A 150 650 151 HOH HOH . D 4 HOH A 151 651 152 HOH HOH . D 4 HOH A 152 652 153 HOH HOH . D 4 HOH A 153 653 154 HOH HOH . D 4 HOH A 154 654 155 HOH HOH . D 4 HOH A 155 655 156 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 158 HOH HOH . D 4 HOH A 158 658 159 HOH HOH . D 4 HOH A 159 659 160 HOH HOH . D 4 HOH A 160 660 161 HOH HOH . D 4 HOH A 161 661 162 HOH HOH . D 4 HOH A 162 662 163 HOH HOH . D 4 HOH A 163 663 164 HOH HOH . D 4 HOH A 164 664 165 HOH HOH . D 4 HOH A 165 665 166 HOH HOH . D 4 HOH A 166 666 167 HOH HOH . D 4 HOH A 167 667 168 HOH HOH . D 4 HOH A 168 668 169 HOH HOH . D 4 HOH A 169 669 170 HOH HOH . D 4 HOH A 170 670 171 HOH HOH . D 4 HOH A 171 671 172 HOH HOH . D 4 HOH A 172 672 173 HOH HOH . D 4 HOH A 173 673 174 HOH HOH . D 4 HOH A 174 674 175 HOH HOH . D 4 HOH A 175 675 176 HOH HOH . D 4 HOH A 176 676 177 HOH HOH . D 4 HOH A 177 677 178 HOH HOH . D 4 HOH A 178 678 179 HOH HOH . D 4 HOH A 179 679 180 HOH HOH . D 4 HOH A 180 680 181 HOH HOH . D 4 HOH A 181 681 182 HOH HOH . D 4 HOH A 182 682 183 HOH HOH . D 4 HOH A 183 683 184 HOH HOH . D 4 HOH A 184 684 185 HOH HOH . D 4 HOH A 185 685 186 HOH HOH . D 4 HOH A 186 686 187 HOH HOH . D 4 HOH A 187 687 188 HOH HOH . D 4 HOH A 188 688 189 HOH HOH . D 4 HOH A 189 689 190 HOH HOH . D 4 HOH A 190 690 191 HOH HOH . D 4 HOH A 191 691 192 HOH HOH . D 4 HOH A 192 692 193 HOH HOH . D 4 HOH A 193 693 194 HOH HOH . D 4 HOH A 194 694 195 HOH HOH . D 4 HOH A 195 695 196 HOH HOH . D 4 HOH A 196 696 197 HOH HOH . D 4 HOH A 197 697 198 HOH HOH . D 4 HOH A 198 698 199 HOH HOH . D 4 HOH A 199 699 200 HOH HOH . E 4 HOH B 1 501 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -8.876 -4.761 19.568 1 15.26 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . C 3 -8.43 -3.347 19.873 1 12.28 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . C 3 -10.342 -4.992 20.094 1 10.48 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . C 3 -7.904 -5.828 20.292 1 13.66 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . C 3 -9.661 -3.909 16.992 1 12.6 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . C 3 -8.819 -4.188 15.665 1 8.03 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . C 3 -9.766 -2.432 17.538 1 11.08 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . C 3 -8.828 -5.119 17.945 1 9.89 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . C 3 -11.663 -5.952 16.991 1 15.99 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . C 3 -11.198 -6.446 18.384 1 6.39 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . C 3 -11.413 -6.999 15.943 1 6 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . C 3 -10.998 -4.614 16.486 1 18.86 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . C 3 -13.209 -5.653 16.987 1 12.43 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . C 3 -13.743 -4.771 17.96 1 12.74 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . C 3 -15.104 -5.024 18.437 1 15.71 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . C 3 -15.989 -5 17.373 1 22.01 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . C 3 -15.174 -6.396 18.986 1 16.12 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . C 3 -14.838 -6.461 20.33 1 12.21 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . C 3 -16.508 -6.813 18.722 1 8.25 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . C 3 -17.379 -6.361 19.701 1 3.86 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . C 3 -16.809 -6.166 17.442 1 8.01 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . C 3 -16.652 -7.036 16.251 1 12.49 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . C 3 -15.514 -7.273 15.566 1 8.94 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . C 3 -15.78 -8.12 14.564 1 6.23 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . C 3 -17.096 -8.438 14.604 1 8.33 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . C 3 -17.932 -9.256 13.83 1 9.28 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . C 3 -17.387 -9.981 12.713 1 10.03 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . C 3 -19.234 -9.366 14.132 1 6.29 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . C 3 -19.741 -8.692 15.171 1 13.4 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . C 3 -18.978 -7.894 15.94 1 9.31 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . C 3 -17.657 -7.75 15.678 1 10.72 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #