data_4FMU
#
_model_server_result.job_id            Q0eMOuFm7T0Q9caxNFjQrA 
_model_server_result.datetime_utc      '2025-03-04 23:22:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fmu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1804}' 
#
_entry.id    4FMU 
#
_exptl.entry_id    4FMU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              423.467 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,5S)-2-amino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-5-(propylamino)hexanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4FMU 
_cell.length_a            51.547 
_cell.length_b            77.277 
_cell.length_c            78.864 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FMU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 66 A CYS 1499 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc2 A SG CYS 68 A CYS 1501 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc3 A SG CYS 83 A CYS 1516 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc4 A SG CYS 83 A CYS 1516 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc5 A SG CYS 87 A CYS 1520 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc6 A SG CYS 96 A CYS 1529 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc7 A SG CYS 100 A CYS 1533 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc8 A SG CYS 106 A CYS 1539 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc9 A SG CYS 198 A CYS 1631 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 A SG CYS 245 A CYS 1678 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc11 A SG CYS 247 A CYS 1680 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc12 A SG CYS 252 A CYS 1685 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
#
_chem_comp.formula           'C18 H29 N7 O5' 
_chem_comp.formula_weight    423.467 
_chem_comp.id                0UM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,5S)-2-amino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-5-(propylamino)hexanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAJ 0UM sing 1 n n 
CAJ CAK 0UM sing 2 n n 
OAF CAZ 0UM sing 3 n n 
CAK NAR 0UM sing 4 n n 
CAZ CBB 0UM sing 5 n n 
CAZ CBA 0UM sing 6 n n 
NAR CAY 0UM sing 7 n n 
CAN CBB 0UM sing 8 n n 
CAN CAY 0UM sing 9 n n 
CBB OAS 0UM sing 10 n n 
CBA OAG 0UM sing 11 n n 
CBA CBC 0UM sing 12 n n 
CAY CAM 0UM sing 13 n n 
C8 N7 0UM doub 14 n y 
C8 N9 0UM sing 15 n y 
N7 C5 0UM sing 16 n y 
OAS CBC 0UM sing 17 n n 
CBC N9 0UM sing 18 n n 
N9 C4 0UM sing 19 n y 
CAM CB 0UM sing 20 n n 
C5 C4 0UM doub 21 n y 
C5 C6 0UM sing 22 n y 
C4 N3 0UM sing 23 n y 
N6 C6 0UM sing 24 n n 
C6 N1 0UM doub 25 n y 
N3 C2 0UM doub 26 n y 
N1 C2 0UM sing 27 n y 
CB CA 0UM sing 28 n n 
CA N 0UM sing 29 n n 
CA C 0UM sing 30 n n 
OXT C 0UM doub 31 n n 
C O 0UM sing 32 n n 
C8 H1 0UM sing 33 n n 
O H2 0UM sing 34 n n 
CA H3 0UM sing 35 n n 
N H4 0UM sing 36 n n 
N H5 0UM sing 37 n n 
CB H7 0UM sing 38 n n 
CB H8 0UM sing 39 n n 
CAM H9 0UM sing 40 n n 
CAM H10 0UM sing 41 n n 
CAY H11 0UM sing 42 n n 
NAR H12 0UM sing 43 n n 
CAK H14 0UM sing 44 n n 
CAK H15 0UM sing 45 n n 
CAJ H16 0UM sing 46 n n 
CAJ H17 0UM sing 47 n n 
CAA H18 0UM sing 48 n n 
CAA H19 0UM sing 49 n n 
CAA H20 0UM sing 50 n n 
CAN H21 0UM sing 51 n n 
CAN H22 0UM sing 52 n n 
CBB H23 0UM sing 53 n n 
CAZ H24 0UM sing 54 n n 
OAF H25 0UM sing 55 n n 
CBA H26 0UM sing 56 n n 
OAG H27 0UM sing 57 n n 
CBC H28 0UM sing 58 n n 
C2 H29 0UM sing 59 n n 
N6 H30 0UM sing 60 n n 
N6 H31 0UM sing 61 n n 
#
_atom_sites.entry_id                     4FMU 
_atom_sites.fract_transf_matrix[1][1]    0.0194 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01268 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1801 2088 ZN ZN . 
C 2 ZN A 1 1802 2089 ZN ZN . 
D 2 ZN A 1 1803 2090 ZN ZN . 
E 3 0UM A 1 1804 3000 0UM 0UM . 
F 4 UNX A 1 1805 1 UNX UNX . 
G 4 UNX A 1 1806 2 UNX UNX . 
H 4 UNX A 1 1807 3 UNX UNX . 
I 4 UNX A 1 1808 4 UNX UNX . 
J 4 UNX A 1 1809 5 UNX UNX . 
K 4 UNX A 1 1810 6 UNX UNX . 
L 4 UNX A 1 1811 7 UNX UNX . 
M 4 UNX A 1 1812 8 UNX UNX . 
N 4 UNX A 1 1813 9 UNX UNX . 
O 4 UNX A 1 1814 10 UNX UNX . 
P 4 UNX A 1 1815 11 UNX UNX . 
Q 4 UNX A 1 1816 12 UNX UNX . 
R 4 UNX A 1 1817 13 UNX UNX . 
S 5 HOH A 1 1901 1 HOH HOH . 
S 5 HOH A 2 1902 2 HOH HOH . 
S 5 HOH A 3 1903 3 HOH HOH . 
S 5 HOH A 4 1904 4 HOH HOH . 
S 5 HOH A 5 1905 5 HOH HOH . 
S 5 HOH A 6 1906 6 HOH HOH . 
S 5 HOH A 7 1907 7 HOH HOH . 
S 5 HOH A 8 1908 8 HOH HOH . 
S 5 HOH A 9 1909 9 HOH HOH . 
S 5 HOH A 10 1910 10 HOH HOH . 
S 5 HOH A 11 1911 11 HOH HOH . 
S 5 HOH A 12 1912 12 HOH HOH . 
S 5 HOH A 13 1913 13 HOH HOH . 
S 5 HOH A 14 1914 14 HOH HOH . 
S 5 HOH A 15 1915 15 HOH HOH . 
S 5 HOH A 16 1916 16 HOH HOH . 
S 5 HOH A 17 1917 17 HOH HOH . 
S 5 HOH A 18 1918 18 HOH HOH . 
S 5 HOH A 19 1919 19 HOH HOH . 
S 5 HOH A 20 1920 20 HOH HOH . 
S 5 HOH A 21 1921 21 HOH HOH . 
S 5 HOH A 22 1922 22 HOH HOH . 
S 5 HOH A 23 1923 23 HOH HOH . 
S 5 HOH A 24 1924 24 HOH HOH . 
S 5 HOH A 25 1925 25 HOH HOH . 
S 5 HOH A 26 1926 26 HOH HOH . 
S 5 HOH A 27 1927 27 HOH HOH . 
S 5 HOH A 28 1928 28 HOH HOH . 
S 5 HOH A 29 1929 29 HOH HOH . 
S 5 HOH A 30 1930 30 HOH HOH . 
S 5 HOH A 31 1931 31 HOH HOH . 
S 5 HOH A 32 1932 32 HOH HOH . 
S 5 HOH A 33 1933 33 HOH HOH . 
S 5 HOH A 34 1934 34 HOH HOH . 
S 5 HOH A 35 1935 35 HOH HOH . 
S 5 HOH A 36 1936 36 HOH HOH . 
S 5 HOH A 37 1937 37 HOH HOH . 
S 5 HOH A 38 1938 38 HOH HOH . 
S 5 HOH A 39 1939 39 HOH HOH . 
S 5 HOH A 40 1940 40 HOH HOH . 
S 5 HOH A 41 1941 41 HOH HOH . 
S 5 HOH A 42 1942 42 HOH HOH . 
S 5 HOH A 43 1943 43 HOH HOH . 
S 5 HOH A 44 1944 44 HOH HOH . 
S 5 HOH A 45 1945 45 HOH HOH . 
S 5 HOH A 46 1946 46 HOH HOH . 
S 5 HOH A 47 1947 47 HOH HOH . 
S 5 HOH A 48 1948 48 HOH HOH . 
S 5 HOH A 49 1949 49 HOH HOH . 
S 5 HOH A 50 1950 50 HOH HOH . 
S 5 HOH A 51 1951 51 HOH HOH . 
S 5 HOH A 52 1952 52 HOH HOH . 
S 5 HOH A 53 1953 53 HOH HOH . 
S 5 HOH A 54 1954 54 HOH HOH . 
S 5 HOH A 55 1955 55 HOH HOH . 
S 5 HOH A 56 1956 56 HOH HOH . 
S 5 HOH A 57 1957 57 HOH HOH . 
S 5 HOH A 58 1958 58 HOH HOH . 
S 5 HOH A 59 1959 59 HOH HOH . 
S 5 HOH A 60 1960 60 HOH HOH . 
S 5 HOH A 61 1961 61 HOH HOH . 
S 5 HOH A 62 1962 62 HOH HOH . 
S 5 HOH A 63 1963 63 HOH HOH . 
S 5 HOH A 64 1964 64 HOH HOH . 
S 5 HOH A 65 1965 65 HOH HOH . 
S 5 HOH A 66 1966 66 HOH HOH . 
S 5 HOH A 67 1967 67 HOH HOH . 
S 5 HOH A 68 1968 68 HOH HOH . 
S 5 HOH A 69 1969 69 HOH HOH . 
S 5 HOH A 70 1970 70 HOH HOH . 
S 5 HOH A 71 1971 71 HOH HOH . 
S 5 HOH A 72 1972 72 HOH HOH . 
S 5 HOH A 73 1973 73 HOH HOH . 
S 5 HOH A 74 1974 74 HOH HOH . 
S 5 HOH A 75 1975 75 HOH HOH . 
S 5 HOH A 76 1976 76 HOH HOH . 
S 5 HOH A 77 1977 77 HOH HOH . 
S 5 HOH A 78 1978 78 HOH HOH . 
S 5 HOH A 79 1979 79 HOH HOH . 
S 5 HOH A 80 1980 80 HOH HOH . 
S 5 HOH A 81 1981 81 HOH HOH . 
S 5 HOH A 82 1982 82 HOH HOH . 
S 5 HOH A 83 1983 83 HOH HOH . 
S 5 HOH A 84 1984 84 HOH HOH . 
S 5 HOH A 85 1985 85 HOH HOH . 
S 5 HOH A 86 1986 86 HOH HOH . 
S 5 HOH A 87 1987 87 HOH HOH . 
S 5 HOH A 88 1988 88 HOH HOH . 
S 5 HOH A 89 1989 89 HOH HOH . 
S 5 HOH A 90 1990 90 HOH HOH . 
S 5 HOH A 91 1991 91 HOH HOH . 
S 5 HOH A 92 1992 92 HOH HOH . 
S 5 HOH A 93 1993 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 0UM . . . E 3 -1.198 31.253 18.236 1 36.25 ? C4 0UM 1804 A 1 
HETATM 2 C C5 0UM . . . E 3 0.139 31.131 18.153 1 33.95 ? C5 0UM 1804 A 1 
HETATM 3 C C6 0UM . . . E 3 0.921 32.213 18.379 1 34.09 ? C6 0UM 1804 A 1 
HETATM 4 C C8 0UM . . . E 3 -0.737 29.2 17.699 1 34.69 ? C8 0UM 1804 A 1 
HETATM 5 N N1 0UM . . . E 3 0.388 33.415 18.643 1 33.74 ? N1 0UM 1804 A 1 
HETATM 6 N N3 0UM . . . E 3 -1.799 32.436 18.555 1 34.85 ? N3 0UM 1804 A 1 
HETATM 7 O O 0UM . . . E 3 -5.957 25.946 21.864 1 36.07 ? O 0UM 1804 A 1 
HETATM 8 C C 0UM . . . E 3 -5.78 25.46 20.741 1 36.81 ? C 0UM 1804 A 1 
HETATM 9 C CA 0UM . . . E 3 -4.597 26.017 19.889 1 34.97 ? CA 0UM 1804 A 1 
HETATM 10 N N 0UM . . . E 3 -3.648 26.824 20.679 1 30.65 ? N 0UM 1804 A 1 
HETATM 11 C CB 0UM . . . E 3 -3.861 24.87 19.206 1 31.18 ? CB 0UM 1804 A 1 
HETATM 12 C CAM 0UM . . . E 3 -2.956 25.305 18.036 1 30.38 ? CAM 0UM 1804 A 1 
HETATM 13 C CAY 0UM . . . E 3 -3.734 25.525 16.702 1 31.56 ? CAY 0UM 1804 A 1 
HETATM 14 N NAR 0UM . . . E 3 -3.576 24.36 15.809 1 34.56 ? NAR 0UM 1804 A 1 
HETATM 15 C CAK 0UM . . . E 3 -2.294 24.201 15.077 1 32.99 ? CAK 0UM 1804 A 1 
HETATM 16 C CAJ 0UM . . . E 3 -2.379 22.928 14.227 1 34.79 ? CAJ 0UM 1804 A 1 
HETATM 17 C CAA 0UM . . . E 3 -1.118 22.726 13.388 1 36.71 ? CAA 0UM 1804 A 1 
HETATM 18 C CAN 0UM . . . E 3 -3.311 26.845 15.967 1 29.9 ? CAN 0UM 1804 A 1 
HETATM 19 C CBB 0UM . . . E 3 -3.973 28.088 16.554 1 28.68 ? CBB 0UM 1804 A 1 
HETATM 20 O OAS 0UM . . . E 3 -3.388 28.395 17.839 1 30.97 ? OAS 0UM 1804 A 1 
HETATM 21 C CAZ 0UM . . . E 3 -3.686 29.28 15.664 1 33.57 ? CAZ 0UM 1804 A 1 
HETATM 22 O OAF 0UM . . . E 3 -4.715 29.351 14.719 1 37.14 ? OAF 0UM 1804 A 1 
HETATM 23 C CBA 0UM . . . E 3 -3.784 30.431 16.645 1 32.22 ? CBA 0UM 1804 A 1 
HETATM 24 O OAG 0UM . . . E 3 -5.14 30.755 16.887 1 35.52 ? OAG 0UM 1804 A 1 
HETATM 25 C CBC 0UM . . . E 3 -3.183 29.821 17.941 1 33.5 ? CBC 0UM 1804 A 1 
HETATM 26 N N9 0UM . . . E 3 -1.721 30.049 18.016 1 35.2 ? N9 0UM 1804 A 1 
HETATM 27 N N7 0UM . . . E 3 0.408 29.86 17.812 1 35.63 ? N7 0UM 1804 A 1 
HETATM 28 C C2 0UM . . . E 3 -0.999 33.551 18.776 1 34.33 ? C2 0UM 1804 A 1 
HETATM 29 N N6 0UM . . . E 3 2.242 32.082 18.257 1 30.81 ? N6 0UM 1804 A 1 
HETATM 30 O OXT 0UM . . . E 3 -6.557 24.62 20.226 1 34.29 ? OXT 0UM 1804 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#