data_4FMW # _model_server_result.job_id TG0hulTVkno5rLZ4wawYvw _model_server_result.datetime_utc '2024-11-04 22:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 4FMW # _exptl.entry_id 4FMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.43 _cell.angle_beta 90.03 _cell.angle_gamma 92.88 _cell.entry_id 4FMW _cell.length_a 37.097 _cell.length_b 43.309 _cell.length_c 60.347 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,CA 1 1 B,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 32 A LEU 112 1_555 A N MSE 33 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 A C MSE 33 A MSE 113 1_555 A N VAL 34 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C ASN 73 A ASN 153 1_555 A N MSE 74 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C MSE 74 A MSE 154 1_555 A N ASP 75 A ASP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale5 B C LEU 32 B LEU 112 1_555 B N MSE 33 B MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 B C MSE 33 B MSE 113 1_555 B N VAL 34 B VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 B C ASN 73 B ASN 153 1_555 B N MSE 74 B MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale8 B C MSE 74 B MSE 154 1_555 B N ASP 75 B ASP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? metalc ? metalc1 B O THR 20 B THR 100 1_555 R K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc2 B O GLU 119 B GLU 199 1_555 R K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc3 B O SER 120 B SER 200 1_555 R K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc4 B O LYS 121 B LYS 201 1_555 R K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc5 R K K . B K 304 1_555 DA O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 4FMW _atom_sites.fract_transf_matrix[1][1] 0.026956 _atom_sites.fract_transf_matrix[1][2] 0.001356 _atom_sites.fract_transf_matrix[1][3] 0.000264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023119 _atom_sites.fract_transf_matrix[2][3] 0.004262 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 1000 SAH SAH . D 3 EDO A 1 302 2001 EDO EDO . E 4 UNX A 1 303 1001 UNX UNX . F 4 UNX A 1 304 1002 UNX UNX . G 4 UNX A 1 305 1003 UNX UNX . H 4 UNX A 1 306 1006 UNX UNX . I 4 UNX A 1 307 1010 UNX UNX . J 4 UNX A 1 308 1011 UNX UNX . K 4 UNX A 1 309 1012 UNX UNX . L 4 UNX A 1 310 1017 UNX UNX . M 4 UNX A 1 311 1018 UNX UNX . N 4 UNX A 1 312 1019 UNX UNX . O 2 SAH B 1 301 1000 SAH SAH . P 3 EDO B 1 302 2000 EDO EDO . Q 3 EDO B 1 303 2002 EDO EDO . R 5 K B 1 304 1 K K . S 4 UNX B 1 305 1004 UNX UNX . T 4 UNX B 1 306 1005 UNX UNX . U 4 UNX B 1 307 1007 UNX UNX . V 4 UNX B 1 308 1009 UNX UNX . W 4 UNX B 1 309 1013 UNX UNX . X 4 UNX B 1 310 1014 UNX UNX . Y 4 UNX B 1 311 1015 UNX UNX . Z 4 UNX B 1 312 1016 UNX UNX . AA 4 UNX B 1 313 1020 UNX UNX . BA 4 UNX B 1 314 1023 UNX UNX . CA 6 HOH A 1 401 1 HOH HOH . CA 6 HOH A 2 402 3 HOH HOH . CA 6 HOH A 3 403 5 HOH HOH . CA 6 HOH A 4 404 7 HOH HOH . CA 6 HOH A 5 405 8 HOH HOH . CA 6 HOH A 6 406 10 HOH HOH . CA 6 HOH A 7 407 11 HOH HOH . CA 6 HOH A 8 408 12 HOH HOH . CA 6 HOH A 9 409 13 HOH HOH . CA 6 HOH A 10 410 14 HOH HOH . CA 6 HOH A 11 411 18 HOH HOH . CA 6 HOH A 12 412 21 HOH HOH . CA 6 HOH A 13 413 22 HOH HOH . CA 6 HOH A 14 414 23 HOH HOH . CA 6 HOH A 15 415 24 HOH HOH . CA 6 HOH A 16 416 25 HOH HOH . CA 6 HOH A 17 417 27 HOH HOH . CA 6 HOH A 18 418 30 HOH HOH . CA 6 HOH A 19 419 31 HOH HOH . CA 6 HOH A 20 420 33 HOH HOH . CA 6 HOH A 21 421 35 HOH HOH . CA 6 HOH A 22 422 39 HOH HOH . CA 6 HOH A 23 423 40 HOH HOH . CA 6 HOH A 24 424 42 HOH HOH . CA 6 HOH A 25 425 44 HOH HOH . CA 6 HOH A 26 426 47 HOH HOH . CA 6 HOH A 27 427 48 HOH HOH . CA 6 HOH A 28 428 49 HOH HOH . CA 6 HOH A 29 429 50 HOH HOH . CA 6 HOH A 30 430 51 HOH HOH . CA 6 HOH A 31 431 52 HOH HOH . CA 6 HOH A 32 432 54 HOH HOH . CA 6 HOH A 33 433 57 HOH HOH . CA 6 HOH A 34 434 58 HOH HOH . CA 6 HOH A 35 435 60 HOH HOH . CA 6 HOH A 36 436 62 HOH HOH . CA 6 HOH A 37 437 64 HOH HOH . CA 6 HOH A 38 438 65 HOH HOH . CA 6 HOH A 39 439 72 HOH HOH . CA 6 HOH A 40 440 73 HOH HOH . CA 6 HOH A 41 441 74 HOH HOH . CA 6 HOH A 42 442 77 HOH HOH . CA 6 HOH A 43 443 78 HOH HOH . CA 6 HOH A 44 444 80 HOH HOH . CA 6 HOH A 45 445 81 HOH HOH . CA 6 HOH A 46 446 91 HOH HOH . CA 6 HOH A 47 447 92 HOH HOH . CA 6 HOH A 48 448 93 HOH HOH . CA 6 HOH A 49 449 94 HOH HOH . CA 6 HOH A 50 450 95 HOH HOH . CA 6 HOH A 51 451 96 HOH HOH . CA 6 HOH A 52 452 99 HOH HOH . CA 6 HOH A 53 453 100 HOH HOH . CA 6 HOH A 54 454 101 HOH HOH . CA 6 HOH A 55 455 102 HOH HOH . CA 6 HOH A 56 456 103 HOH HOH . CA 6 HOH A 57 457 104 HOH HOH . CA 6 HOH A 58 458 105 HOH HOH . CA 6 HOH A 59 459 125 HOH HOH . CA 6 HOH A 60 460 127 HOH HOH . CA 6 HOH A 61 461 133 HOH HOH . CA 6 HOH A 62 462 134 HOH HOH . CA 6 HOH A 63 463 135 HOH HOH . CA 6 HOH A 64 464 138 HOH HOH . DA 6 HOH B 1 401 2 HOH HOH . DA 6 HOH B 2 402 4 HOH HOH . DA 6 HOH B 3 403 6 HOH HOH . DA 6 HOH B 4 404 9 HOH HOH . DA 6 HOH B 5 405 15 HOH HOH . DA 6 HOH B 6 406 16 HOH HOH . DA 6 HOH B 7 407 17 HOH HOH . DA 6 HOH B 8 408 19 HOH HOH . DA 6 HOH B 9 409 20 HOH HOH . DA 6 HOH B 10 410 26 HOH HOH . DA 6 HOH B 11 411 28 HOH HOH . DA 6 HOH B 12 412 29 HOH HOH . DA 6 HOH B 13 413 32 HOH HOH . DA 6 HOH B 14 414 34 HOH HOH . DA 6 HOH B 15 415 36 HOH HOH . DA 6 HOH B 16 416 37 HOH HOH . DA 6 HOH B 17 417 38 HOH HOH . DA 6 HOH B 18 418 41 HOH HOH . DA 6 HOH B 19 419 43 HOH HOH . DA 6 HOH B 20 420 45 HOH HOH . DA 6 HOH B 21 421 46 HOH HOH . DA 6 HOH B 22 422 53 HOH HOH . DA 6 HOH B 23 423 55 HOH HOH . DA 6 HOH B 24 424 56 HOH HOH . DA 6 HOH B 25 425 59 HOH HOH . DA 6 HOH B 26 426 61 HOH HOH . DA 6 HOH B 27 427 63 HOH HOH . DA 6 HOH B 28 428 66 HOH HOH . DA 6 HOH B 29 429 67 HOH HOH . DA 6 HOH B 30 430 68 HOH HOH . DA 6 HOH B 31 431 69 HOH HOH . DA 6 HOH B 32 432 70 HOH HOH . DA 6 HOH B 33 433 71 HOH HOH . DA 6 HOH B 34 434 75 HOH HOH . DA 6 HOH B 35 435 76 HOH HOH . DA 6 HOH B 36 436 82 HOH HOH . DA 6 HOH B 37 437 83 HOH HOH . DA 6 HOH B 38 438 84 HOH HOH . DA 6 HOH B 39 439 85 HOH HOH . DA 6 HOH B 40 440 86 HOH HOH . DA 6 HOH B 41 441 87 HOH HOH . DA 6 HOH B 42 442 88 HOH HOH . DA 6 HOH B 43 443 89 HOH HOH . DA 6 HOH B 44 444 90 HOH HOH . DA 6 HOH B 45 445 97 HOH HOH . DA 6 HOH B 46 446 98 HOH HOH . DA 6 HOH B 47 447 106 HOH HOH . DA 6 HOH B 48 448 107 HOH HOH . DA 6 HOH B 49 449 108 HOH HOH . DA 6 HOH B 50 450 109 HOH HOH . DA 6 HOH B 51 451 110 HOH HOH . DA 6 HOH B 52 452 111 HOH HOH . DA 6 HOH B 53 453 112 HOH HOH . DA 6 HOH B 54 454 113 HOH HOH . DA 6 HOH B 55 455 114 HOH HOH . DA 6 HOH B 56 456 115 HOH HOH . DA 6 HOH B 57 457 116 HOH HOH . DA 6 HOH B 58 458 117 HOH HOH . DA 6 HOH B 59 459 118 HOH HOH . DA 6 HOH B 60 460 119 HOH HOH . DA 6 HOH B 61 461 120 HOH HOH . DA 6 HOH B 62 462 121 HOH HOH . DA 6 HOH B 63 463 122 HOH HOH . DA 6 HOH B 64 464 123 HOH HOH . DA 6 HOH B 65 465 124 HOH HOH . DA 6 HOH B 66 466 126 HOH HOH . DA 6 HOH B 67 467 128 HOH HOH . DA 6 HOH B 68 468 129 HOH HOH . DA 6 HOH B 69 469 130 HOH HOH . DA 6 HOH B 70 470 131 HOH HOH . DA 6 HOH B 71 471 132 HOH HOH . DA 6 HOH B 72 472 136 HOH HOH . DA 6 HOH B 73 473 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . O 2 23.199 4.313 25.135 1 24.53 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . O 2 23.008 5.23 24.016 1 25.68 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . O 2 24.335 5.686 23.326 1 25.39 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . O 2 24.407 7.199 23.165 1 24.97 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . O 2 25.754 7.507 21.982 1 24.29 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . O 2 22.035 4.625 22.976 1 31.89 ? C SAH 301 B 1 HETATM 7 O O SAH . . . O 2 22.319 4.592 21.759 1 31.62 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . O 2 20.927 4.17 23.489 1 32.25 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . O 2 25.028 8.718 20.845 1 23.79 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . O 2 24.524 8.088 19.56 1 23.07 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . O 2 25.582 7.735 18.645 1 23.57 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . O 2 23.692 6.82 19.691 1 22.48 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . O 2 22.365 7.088 20.129 1 21.23 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . O 2 23.753 6.249 18.278 1 23.14 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . O 2 22.774 6.829 17.419 1 23.45 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . O 2 25.172 6.64 17.838 1 23.28 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . O 2 26.161 5.566 17.954 1 23.67 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . O 2 27.095 5.403 18.946 1 23.96 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . O 2 27.887 4.373 18.771 1 24.51 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . O 2 27.442 3.813 17.583 1 24.6 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . O 2 27.861 2.684 16.847 1 23.67 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . O 2 28.888 1.907 17.2 1 22.7 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . O 2 27.184 2.384 15.713 1 23.86 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . O 2 26.163 3.169 15.344 1 23.73 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . O 2 25.685 4.262 15.95 1 23.75 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . O 2 26.373 4.534 17.072 1 24.06 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #