data_4FN9 # _model_server_result.job_id kij5j3aau13bvMqMG0GVQg _model_server_result.datetime_utc '2024-11-25 00:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4FN9 # _exptl.entry_id 4FN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FN9 _cell.length_a 53.472 _cell.length_b 112.108 _cell.length_c 132.846 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 1 2 A,C,D,E,F,G,H,L 2 1 B,I,J,K,M 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -26.736 0 66.423 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 232 n n C1 C2 GOL sing 233 n n C1 H11 GOL sing 234 n n C1 H12 GOL sing 235 n n O1 HO1 GOL sing 236 n n C2 O2 GOL sing 237 n n C2 C3 GOL sing 238 n n C2 H2 GOL sing 239 n n O2 HO2 GOL sing 240 n n C3 O3 GOL sing 241 n n C3 H31 GOL sing 242 n n C3 H32 GOL sing 243 n n O3 HO3 GOL sing 244 n n # _atom_sites.entry_id 4FN9 _atom_sites.fract_transf_matrix[1][1] 0.018701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STR A 1 301 2 STR STR . D 3 GOL A 1 302 1 GOL GOL . E 3 GOL A 1 303 2 GOL GOL . F 4 MES A 1 304 1 MES MES . G 5 CPS A 1 305 2 CPS CPS . H 6 SO4 A 1 306 1 SO4 SO4 . I 2 STR B 1 301 1 STR STR . J 4 MES B 1 302 2 MES MES . K 5 CPS B 1 303 1 CPS CPS . L 7 HOH A 1 401 3 HOH HOH . L 7 HOH A 2 402 5 HOH HOH . L 7 HOH A 3 403 6 HOH HOH . L 7 HOH A 4 404 8 HOH HOH . L 7 HOH A 5 405 9 HOH HOH . L 7 HOH A 6 406 10 HOH HOH . L 7 HOH A 7 407 11 HOH HOH . L 7 HOH A 8 408 12 HOH HOH . M 7 HOH B 1 401 1 HOH HOH . M 7 HOH B 2 402 2 HOH HOH . M 7 HOH B 3 403 4 HOH HOH . M 7 HOH B 4 404 7 HOH HOH . M 7 HOH B 5 405 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -20.027 2.079 5.069 1 75.38 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 -21.436 1.966 5.09 1 67.12 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 -19.464 1.546 3.745 1 86.14 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 -18.154 2.056 3.535 1 77.49 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 -19.463 0.009 3.732 1 84.93 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 -18.904 -0.505 2.536 1 76.27 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #