data_4FNJ # _model_server_result.job_id R37UjjG9yQU76QcTx_OwAQ _model_server_result.datetime_utc '2024-11-20 17:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 4FNJ # _exptl.entry_id 4FNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FNJ _cell.length_a 70.336 _cell.length_b 70.336 _cell.length_c 68.236 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O2' A 10 A A 10 1_555 E MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A O6 G 12 A G 12 1_555 E MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc3 A OP1 G 28 A G 28 1_555 F MG MG . A MG 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc4 B MG MG . A MG 101 1_555 G O HOH . A HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc5 B MG MG . A MG 101 1_555 G O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 B MG MG . A MG 101 1_555 G O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 B MG MG . A MG 101 1_555 G O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc8 C MG MG . A MG 102 1_555 G O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc9 C MG MG . A MG 102 1_555 G O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc10 C MG MG . A MG 102 1_555 G O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 C MG MG . A MG 102 1_555 G O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 A N1 G 35 A G 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 A O6 G 35 A G 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 A N2 G 35 A G 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog4 A N3 U 2 A U 2 1_555 A O2 U 34 A U 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog5 A O4 U 2 A U 2 1_555 A N3 U 34 A U 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 3 A G 3 1_555 A N3 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 3 A G 3 1_555 A O2 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 3 A G 3 1_555 A N4 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 C 4 A C 4 1_555 A N1 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 C 4 A C 4 1_555 A O6 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 C 4 A C 4 1_555 A N2 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-U MISPAIR' hydrog12 A O4 U 5 A U 5 1_555 A N3 U 31 A U 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 G 6 A G 6 1_555 A N3 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 G 6 A G 6 1_555 A O2 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 G 6 A G 6 1_555 A N4 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 G 7 A G 7 1_555 A N3 C 29 A C 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 G 7 A G 7 1_555 A O2 C 29 A C 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 G 7 A G 7 1_555 A N4 C 29 A C 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 C 8 A C 8 1_555 A N1 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 C 8 A C 8 1_555 A O6 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 C 8 A C 8 1_555 A N2 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog22 A N3 U 9 A U 9 1_555 A N7 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog23 A O2 U 9 A U 9 1_555 A N6 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog24 A N3 A 10 A A 10 1_555 A N6 A 11 A A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 A 11 A A 11 1_555 A N3 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 A 11 A A 11 1_555 A O4 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog27 A N1 G 12 A G 12 1_555 A O2 U 25 A U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog28 A O6 G 12 A G 12 1_555 A N3 U 25 A U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog29 A N2 G 12 A G 12 1_555 A O4 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 G 13 A G 13 1_555 A N3 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 G 13 A G 13 1_555 A O2 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 G 13 A G 13 1_555 A N4 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 C 14 A C 14 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 C 14 A C 14 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 C 14 A C 14 1_555 A N2 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 A 15 A A 15 1_555 A N3 U 22 A U 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N6 A 15 A A 15 1_555 A O4 U 22 A U 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog38 A N3 U 16 A U 16 1_555 A O6 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog39 A O2 U 16 A U 16 1_555 A N1 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog40 A N2 G 17 A G 17 1_555 A N7 A 20 A A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FNJ _atom_sites.fract_transf_matrix[1][1] 0.014217 _atom_sites.fract_transf_matrix[1][2] 0.008208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 101 1 MG MG . C 2 MG A 1 102 1 MG MG . D 2 MG A 1 103 1 MG MG . E 2 MG A 1 104 1 MG MG . F 2 MG A 1 105 1 MG MG . G 3 HOH A 1 201 2 HOH HOH . G 3 HOH A 2 202 3 HOH HOH . G 3 HOH A 3 203 4 HOH HOH . G 3 HOH A 4 204 7 HOH HOH . G 3 HOH A 5 205 9 HOH HOH . G 3 HOH A 6 206 10 HOH HOH . G 3 HOH A 7 207 11 HOH HOH . G 3 HOH A 8 208 13 HOH HOH . G 3 HOH A 9 209 14 HOH HOH . G 3 HOH A 10 210 16 HOH HOH . G 3 HOH A 11 211 20 HOH HOH . G 3 HOH A 12 212 25 HOH HOH . G 3 HOH A 13 213 33 HOH HOH . G 3 HOH A 14 214 37 HOH HOH . G 3 HOH A 15 215 42 HOH HOH . G 3 HOH A 16 216 45 HOH HOH . G 3 HOH A 17 217 49 HOH HOH . G 3 HOH A 18 218 50 HOH HOH . G 3 HOH A 19 219 55 HOH HOH . G 3 HOH A 20 220 69 HOH HOH . G 3 HOH A 21 221 72 HOH HOH . G 3 HOH A 22 222 73 HOH HOH . G 3 HOH A 23 223 74 HOH HOH . G 3 HOH A 24 224 76 HOH HOH . G 3 HOH A 25 225 77 HOH HOH . G 3 HOH A 26 226 78 HOH HOH . G 3 HOH A 27 227 79 HOH HOH . G 3 HOH A 28 228 80 HOH HOH . G 3 HOH A 29 229 81 HOH HOH . G 3 HOH A 30 230 83 HOH HOH . G 3 HOH A 31 231 84 HOH HOH . G 3 HOH A 32 232 86 HOH HOH . G 3 HOH A 33 233 88 HOH HOH . G 3 HOH A 34 234 91 HOH HOH . G 3 HOH A 35 235 92 HOH HOH . G 3 HOH A 36 236 93 HOH HOH . G 3 HOH A 37 237 94 HOH HOH . G 3 HOH A 38 238 95 HOH HOH . G 3 HOH A 39 239 96 HOH HOH . G 3 HOH A 40 240 97 HOH HOH . G 3 HOH A 41 241 102 HOH HOH . G 3 HOH A 42 242 104 HOH HOH . G 3 HOH A 43 243 108 HOH HOH . G 3 HOH A 44 244 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.75 _atom_site.Cartn_y -9.574 _atom_site.Cartn_z -7.177 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 104 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 588 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #