data_4FNZ # _model_server_result.job_id 0GL9uXj2c9IN5NA9QC4AYg _model_server_result.datetime_utc '2024-12-21 18:31:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 4FNZ # _exptl.entry_id 4FNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.553 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-[3-(trifluoromethoxy)benzyl]-1-{2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}piperidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FNZ _cell.length_a 51.496 _cell.length_b 58.059 _cell.length_c 105.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H30 F3 N5 O5' _chem_comp.formula_weight 561.553 _chem_comp.id NZF _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-[3-(trifluoromethoxy)benzyl]-1-{2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}piperidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 O2 NZF sing 237 n n O2 C14 NZF sing 238 n n O1 C15 NZF sing 239 n n O1 C17 NZF sing 240 n n C14 C15 NZF doub 241 n y C14 C13 NZF sing 242 n y O3 C13 NZF sing 243 n n O3 C19 NZF sing 244 n n C15 C16 NZF sing 245 n y C13 C12 NZF doub 246 n y C2 C1 NZF sing 247 n n C2 N1 NZF sing 248 n n C16 C11 NZF doub 249 n y C12 C11 NZF sing 250 n y C11 N4 NZF sing 251 n n C1 C5 NZF sing 252 n n N1 C3 NZF sing 253 n n N1 C7 NZF sing 254 n n C5 C4 NZF sing 255 n n N3 C7 NZF doub 256 n y N3 C10 NZF sing 257 n y C3 C4 NZF sing 258 n n N4 C10 NZF sing 259 n n C7 C8 NZF sing 260 n y O4 C6 NZF doub 261 n n C10 N2 NZF doub 262 n y C4 C6 NZF sing 263 n n C6 N5 NZF sing 264 n n C8 C9 NZF doub 265 n y N2 C9 NZF sing 266 n y N5 C20 NZF sing 267 n n C20 C21 NZF sing 268 n n C21 C22 NZF doub 269 n y C21 C27 NZF sing 270 n y C22 C23 NZF sing 271 n y C27 C25 NZF doub 272 n y C23 C24 NZF doub 273 n y C25 C24 NZF sing 274 n y C25 O5 NZF sing 275 n n F1 C26 NZF sing 276 n n O5 C26 NZF sing 277 n n C26 F2 NZF sing 278 n n C26 F3 NZF sing 279 n n C17 H1 NZF sing 280 n n C17 H2 NZF sing 281 n n C17 H3 NZF sing 282 n n C16 H4 NZF sing 283 n n C18 H5 NZF sing 284 n n C18 H6 NZF sing 285 n n C18 H7 NZF sing 286 n n C19 H8 NZF sing 287 n n C19 H9 NZF sing 288 n n C19 H10 NZF sing 289 n n C12 H11 NZF sing 290 n n N4 H12 NZF sing 291 n n C9 H13 NZF sing 292 n n C8 H14 NZF sing 293 n n C3 H15 NZF sing 294 n n C3 H16 NZF sing 295 n n C2 H17 NZF sing 296 n n C2 H18 NZF sing 297 n n C1 H19 NZF sing 298 n n C1 H20 NZF sing 299 n n C5 H21 NZF sing 300 n n C5 H22 NZF sing 301 n n C4 H23 NZF sing 302 n n N5 H24 NZF sing 303 n n C20 H25 NZF sing 304 n n C20 H26 NZF sing 305 n n C27 H27 NZF sing 306 n n C22 H28 NZF sing 307 n n C23 H29 NZF sing 308 n n C24 H30 NZF sing 309 n n # _atom_sites.entry_id 4FNZ _atom_sites.fract_transf_matrix[1][1] 0.019419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NZF A 1 1501 1 NZF NZF . C 3 HOH A 1 1601 1 HOH HOH . C 3 HOH A 2 1602 2 HOH HOH . C 3 HOH A 3 1603 3 HOH HOH . C 3 HOH A 4 1604 4 HOH HOH . C 3 HOH A 5 1605 5 HOH HOH . C 3 HOH A 6 1606 6 HOH HOH . C 3 HOH A 7 1607 7 HOH HOH . C 3 HOH A 8 1608 8 HOH HOH . C 3 HOH A 9 1609 9 HOH HOH . C 3 HOH A 10 1610 10 HOH HOH . C 3 HOH A 11 1611 11 HOH HOH . C 3 HOH A 12 1612 12 HOH HOH . C 3 HOH A 13 1613 13 HOH HOH . C 3 HOH A 14 1614 14 HOH HOH . C 3 HOH A 15 1615 15 HOH HOH . C 3 HOH A 16 1616 16 HOH HOH . C 3 HOH A 17 1617 17 HOH HOH . C 3 HOH A 18 1618 18 HOH HOH . C 3 HOH A 19 1619 19 HOH HOH . C 3 HOH A 20 1620 20 HOH HOH . C 3 HOH A 21 1621 21 HOH HOH . C 3 HOH A 22 1622 22 HOH HOH . C 3 HOH A 23 1623 23 HOH HOH . C 3 HOH A 24 1624 24 HOH HOH . C 3 HOH A 25 1625 25 HOH HOH . C 3 HOH A 26 1626 26 HOH HOH . C 3 HOH A 27 1627 27 HOH HOH . C 3 HOH A 28 1628 28 HOH HOH . C 3 HOH A 29 1629 29 HOH HOH . C 3 HOH A 30 1630 30 HOH HOH . C 3 HOH A 31 1631 31 HOH HOH . C 3 HOH A 32 1632 32 HOH HOH . C 3 HOH A 33 1633 33 HOH HOH . C 3 HOH A 34 1634 34 HOH HOH . C 3 HOH A 35 1635 35 HOH HOH . C 3 HOH A 36 1636 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 NZF . . . B 2 18.882 8.419 59.441 1 39.11 ? C17 NZF 1501 A 1 HETATM 2 O O1 NZF . . . B 2 19.887 8.594 58.4 1 42.34 ? O1 NZF 1501 A 1 HETATM 3 C C15 NZF . . . B 2 21.19 8.659 58.86 1 41.55 ? C15 NZF 1501 A 1 HETATM 4 C C16 NZF . . . B 2 21.55 9.676 59.759 1 37.71 ? C16 NZF 1501 A 1 HETATM 5 C C14 NZF . . . B 2 22.167 7.73 58.44 1 40.57 ? C14 NZF 1501 A 1 HETATM 6 O O2 NZF . . . B 2 21.874 6.713 57.572 1 44.81 ? O2 NZF 1501 A 1 HETATM 7 C C18 NZF . . . B 2 22.403 6.929 56.246 1 42.66 ? C18 NZF 1501 A 1 HETATM 8 C C13 NZF . . . B 2 23.465 7.833 58.932 1 36.86 ? C13 NZF 1501 A 1 HETATM 9 O O3 NZF . . . B 2 24.441 6.969 58.558 1 33.55 ? O3 NZF 1501 A 1 HETATM 10 C C19 NZF . . . B 2 25.4 6.812 59.611 1 29.82 ? C19 NZF 1501 A 1 HETATM 11 C C12 NZF . . . B 2 23.794 8.855 59.81 1 37.53 ? C12 NZF 1501 A 1 HETATM 12 C C11 NZF . . . B 2 22.86 9.786 60.229 1 34.31 ? C11 NZF 1501 A 1 HETATM 13 N N4 NZF . . . B 2 23.312 10.706 61.095 1 34.25 ? N4 NZF 1501 A 1 HETATM 14 C C10 NZF . . . B 2 22.741 11.885 61.397 1 32.54 ? C10 NZF 1501 A 1 HETATM 15 N N3 NZF . . . B 2 21.578 12.289 60.862 1 28.9 ? N3 NZF 1501 A 1 HETATM 16 N N2 NZF . . . B 2 23.381 12.674 62.287 1 31.44 ? N2 NZF 1501 A 1 HETATM 17 C C9 NZF . . . B 2 22.891 13.846 62.661 1 29.85 ? C9 NZF 1501 A 1 HETATM 18 C C8 NZF . . . B 2 21.687 14.291 62.125 1 30.19 ? C8 NZF 1501 A 1 HETATM 19 C C7 NZF . . . B 2 21.037 13.467 61.207 1 29.92 ? C7 NZF 1501 A 1 HETATM 20 N N1 NZF . . . B 2 19.818 13.845 60.631 1 31.52 ? N1 NZF 1501 A 1 HETATM 21 C C3 NZF . . . B 2 19.134 15.094 61.019 1 30.34 ? C3 NZF 1501 A 1 HETATM 22 C C2 NZF . . . B 2 19.127 12.915 59.699 1 32.34 ? C2 NZF 1501 A 1 HETATM 23 C C1 NZF . . . B 2 17.807 12.53 60.357 1 30.47 ? C1 NZF 1501 A 1 HETATM 24 C C5 NZF . . . B 2 17.022 13.79 60.729 1 31.23 ? C5 NZF 1501 A 1 HETATM 25 C C4 NZF . . . B 2 17.824 14.703 61.685 1 29.44 ? C4 NZF 1501 A 1 HETATM 26 C C6 NZF . . . B 2 17.012 15.95 62.092 1 28.37 ? C6 NZF 1501 A 1 HETATM 27 O O4 NZF . . . B 2 16.554 16.762 61.283 1 29.43 ? O4 NZF 1501 A 1 HETATM 28 N N5 NZF . . . B 2 16.859 16.092 63.391 1 26.99 ? N5 NZF 1501 A 1 HETATM 29 C C20 NZF . . . B 2 16.119 17.234 63.934 1 27.27 ? C20 NZF 1501 A 1 HETATM 30 C C21 NZF . . . B 2 16.432 17.395 65.414 1 26.72 ? C21 NZF 1501 A 1 HETATM 31 C C27 NZF . . . B 2 15.413 17.478 66.36 1 26.86 ? C27 NZF 1501 A 1 HETATM 32 C C22 NZF . . . B 2 17.758 17.465 65.8 1 26.27 ? C22 NZF 1501 A 1 HETATM 33 C C23 NZF . . . B 2 18.074 17.613 67.142 1 26.54 ? C23 NZF 1501 A 1 HETATM 34 C C24 NZF . . . B 2 17.078 17.698 68.1 1 26.06 ? C24 NZF 1501 A 1 HETATM 35 C C25 NZF . . . B 2 15.751 17.618 67.706 1 28.23 ? C25 NZF 1501 A 1 HETATM 36 O O5 NZF . . . B 2 14.788 17.729 68.651 1 30.88 ? O5 NZF 1501 A 1 HETATM 37 C C26 NZF . . . B 2 14.36 16.547 69.269 1 35.39 ? C26 NZF 1501 A 1 HETATM 38 F F2 NZF . . . B 2 15.354 16.037 69.999 1 34.96 ? F2 NZF 1501 A 1 HETATM 39 F F3 NZF . . . B 2 13.376 16.956 70.072 1 43.01 ? F3 NZF 1501 A 1 HETATM 40 F F1 NZF . . . B 2 13.904 15.654 68.354 1 33.62 ? F1 NZF 1501 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #