data_4FP8 # _model_server_result.job_id 85_fiw9KXrS8NpRCBPIwww _model_server_result.datetime_utc '2024-12-04 05:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":701}' # _entry.id 4FP8 # _exptl.entry_id 4FP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.33 _cell.angle_gamma 90 _cell.entry_id 4FP8 _cell.length_a 90.794 _cell.length_b 247.72 _cell.length_c 95.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 ? trimeric 3 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N,P,Q,R 1 1 B,G,H,S 2 1 C,I,J,M,T,U,V 3 1 D,K,L,O,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n M NAG 1 E 1 NAG C 701 NAG 4 n M NAG 2 E 2 NAG C 702 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 52 1_555 A SG CYS 239 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 26 A CYS 64 1_555 A SG CYS 38 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 59 A CYS 97 1_555 A SG CYS 101 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 243 A CYS 281 1_555 A SG CYS 267 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 14 B CYS 52 1_555 B SG CYS 239 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 26 B CYS 64 1_555 B SG CYS 38 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 59 B CYS 97 1_555 B SG CYS 101 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 243 B CYS 281 1_555 B SG CYS 267 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 14 C CYS 52 1_555 C SG CYS 239 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 26 C CYS 64 1_555 C SG CYS 38 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 C SG CYS 59 C CYS 97 1_555 C SG CYS 101 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 C SG CYS 243 C CYS 281 1_555 C SG CYS 267 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 D SG CYS 14 D CYS 52 1_555 D SG CYS 239 D CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 D SG CYS 26 D CYS 64 1_555 D SG CYS 38 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf15 D SG CYS 59 D CYS 97 1_555 D SG CYS 101 D CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 D SG CYS 243 D CYS 281 1_555 D SG CYS 267 D CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 E SG CYS 22 H CYS 22 1_555 E SG CYS 101 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 E SG CYS 165 H CYS 140 1_555 E SG CYS 221 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf19 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf20 F SG CYS 134 L CYS 134 1_555 F SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf21 G SG CYS 22 I CYS 22 1_555 G SG CYS 101 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf22 G SG CYS 165 I CYS 140 1_555 G SG CYS 221 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 H SG CYS 23 M CYS 23 1_555 H SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf24 H SG CYS 134 M CYS 134 1_555 H SG CYS 194 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf25 I SG CYS 22 J CYS 22 1_555 I SG CYS 101 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf26 I SG CYS 165 J CYS 140 1_555 I SG CYS 221 J CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf27 J SG CYS 23 N CYS 23 1_555 J SG CYS 88 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf28 J SG CYS 134 N CYS 134 1_555 J SG CYS 194 N CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf29 K SG CYS 22 K CYS 22 1_555 K SG CYS 101 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf30 K SG CYS 165 K CYS 140 1_555 K SG CYS 221 K CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf31 L SG CYS 23 O CYS 23 1_555 L SG CYS 88 O CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf32 L SG CYS 134 O CYS 134 1_555 L SG CYS 194 O CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 127 A ASN 165 1_555 N C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 C ND2 ASN 127 C ASN 165 1_555 M C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 D ND2 ASN 127 D ASN 165 1_555 O C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 E C PCA 1 H PCA 1 1_555 E N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 G C PCA 1 I PCA 1 1_555 G N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 I C PCA 1 J PCA 1 1_555 I N VAL 2 J VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 K C PCA 1 K PCA 1 1_555 K N VAL 2 K VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 M O4 NAG . E NAG 1 1_555 M C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 B OD2 ASP 66 B ASP 104 1_555 R ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 B OD1 ASP 66 B ASP 104 1_555 R ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 E OD2 ASP 67 H ASP 61 1_555 P ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 E NE2 HIS 189 H HIS 164 1_555 Q ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc5 F OD1 ASP 151 L ASP 151 1_555 R ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc6 F ND1 HIS 189 L HIS 189 1_555 R ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc7 G NE2 HIS 189 I HIS 164 1_555 S ZN ZN . M ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 H OD1 ASN 138 M ASN 138 1_555 S ZN ZN . M ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc9 I OD1 ASP 67 J ASP 61 1_555 T ZN ZN . J ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc10 I NE2 HIS 189 J HIS 164 1_555 V ZN ZN . N ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc11 T ZN ZN . J ZN 301 1_555 J OD1 ASP 1 N ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 J OD1 ASP 92 N ASP 92 1_555 U ZN ZN . N ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc13 L OD1 ASP 92 O ASP 92 1_555 W ZN ZN . O ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4FP8 _atom_sites.fract_transf_matrix[1][1] 0.011014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 5 NAG A 1 701 701 NAG NAG . O 5 NAG D 1 701 701 NAG NAG . P 6 ZN H 1 301 2 ZN ZN . Q 6 ZN L 1 301 3 ZN ZN . R 6 ZN L 1 302 4 ZN ZN . S 6 ZN M 1 301 6 ZN ZN . T 6 ZN J 1 301 5 ZN ZN . U 6 ZN N 1 301 1 ZN ZN . V 6 ZN N 1 302 9 ZN ZN . W 6 ZN O 1 301 7 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 5 -91.71 -94.122 74.987 1 122.79 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . N 5 -91.184 -94.098 76.42 1 131.26 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . N 5 -92.328 -94.257 77.414 1 139.53 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . N 5 -93.452 -93.269 77.128 1 146.76 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . N 5 -93.804 -93.284 75.642 1 144.06 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . N 5 -94.814 -92.2 75.28 1 146.55 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . N 5 -88.915 -94.88 76.766 1 131.54 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . N 5 -87.973 -96.04 76.635 1 129.93 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . N 5 -90.21 -95.15 76.63 1 129.15 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . N 5 -91.849 -94.044 78.724 1 138.94 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . N 5 -94.582 -93.64 77.884 1 154.07 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . N 5 -92.636 -93.064 74.886 1 134.3 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . N 5 -94.269 -90.92 75.522 1 148.21 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . N 5 -88.486 -93.75 76.989 1 134.45 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 141 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #