data_4FP9 # _model_server_result.job_id lPgTlDtpOZlsKlA3xlyGDQ _model_server_result.datetime_utc '2024-12-22 02:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 4FP9 # _exptl.entry_id 4FP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FP9 _cell.length_a 78.76 _cell.length_b 82.27 _cell.length_c 507.57 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,I,J,K 2 1 C,E,L,M,R 3 1 D,G,N,O,P,Q 4 1 F,H,S,T 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 N N N ? 3 S N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 275 n n N HN1 SAM sing 276 n n N HN2 SAM sing 277 n n CA C SAM sing 278 n n CA CB SAM sing 279 n n CA HA SAM sing 280 n n C O SAM doub 281 n n C OXT SAM sing 282 n n CB CG SAM sing 283 n n CB HB1 SAM sing 284 n n CB HB2 SAM sing 285 n n CG SD SAM sing 286 n n CG HG1 SAM sing 287 n n CG HG2 SAM sing 288 n n SD CE SAM sing 289 n n SD C5' SAM sing 290 n n CE HE1 SAM sing 291 n n CE HE2 SAM sing 292 n n CE HE3 SAM sing 293 n n C5' C4' SAM sing 294 n n C5' "H5'1" SAM sing 295 n n C5' "H5'2" SAM sing 296 n n C4' O4' SAM sing 297 n n C4' C3' SAM sing 298 n n C4' H4' SAM sing 299 n n O4' C1' SAM sing 300 n n C3' O3' SAM sing 301 n n C3' C2' SAM sing 302 n n C3' H3' SAM sing 303 n n O3' HO3' SAM sing 304 n n C2' O2' SAM sing 305 n n C2' C1' SAM sing 306 n n C2' H2' SAM sing 307 n n O2' HO2' SAM sing 308 n n C1' N9 SAM sing 309 n n C1' H1' SAM sing 310 n n N9 C8 SAM sing 311 n y N9 C4 SAM sing 312 n y C8 N7 SAM doub 313 n y C8 H8 SAM sing 314 n n N7 C5 SAM sing 315 n y C5 C6 SAM sing 316 n y C5 C4 SAM doub 317 n y C6 N6 SAM sing 318 n n C6 N1 SAM doub 319 n y N6 HN61 SAM sing 320 n n N6 HN62 SAM sing 321 n n N1 C2 SAM sing 322 n y C2 N3 SAM doub 323 n y C2 H2 SAM sing 324 n n N3 C4 SAM sing 325 n y # _atom_sites.entry_id 4FP9 _atom_sites.fract_transf_matrix[1][1] 0.012697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SAM A 1 401 465 SAM SAM . J 4 SO4 A 1 402 2 SO4 SO4 . K 4 SO4 B 1 401 7 SO4 SO4 . L 3 SAM C 1 401 465 SAM SAM . M 4 SO4 C 1 402 1 SO4 SO4 . N 3 SAM D 1 401 465 SAM SAM . O 4 SO4 D 1 402 3 SO4 SO4 . P 4 SO4 D 1 403 4 SO4 SO4 . Q 4 SO4 D 1 404 5 SO4 SO4 . R 4 SO4 E 1 401 8 SO4 SO4 . S 3 SAM F 1 401 465 SAM SAM . T 4 SO4 F 1 402 6 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . N 3 83.322 127.924 53.995 0.72 3 ? N SAM 401 D 1 HETATM 2 C CA SAM . . . N 3 83.856 128.423 52.72 0.72 3 ? CA SAM 401 D 1 HETATM 3 C C SAM . . . N 3 82.84 128.252 51.583 0.72 8.84 ? C SAM 401 D 1 HETATM 4 O O SAM . . . N 3 82.795 129.139 50.708 0.72 9.39 ? O SAM 401 D 1 HETATM 5 O OXT SAM . . . N 3 82.092 127.249 51.632 0.72 8.61 ? OXT SAM 401 D 1 HETATM 6 C CB SAM . . . N 3 85.184 127.755 52.307 0.72 3 ? CB SAM 401 D 1 HETATM 7 C CG SAM . . . N 3 86.276 127.889 53.423 0.72 3 ? CG SAM 401 D 1 HETATM 8 S SD SAM . . . N 3 87.909 127.632 52.727 0.72 3 ? SD SAM 401 D 1 HETATM 9 C CE SAM . . . N 3 87.809 125.897 52.407 0.72 3 ? CE SAM 401 D 1 HETATM 10 C C5' SAM . . . N 3 89.036 127.638 54.104 0.72 3 ? C5' SAM 401 D 1 HETATM 11 C C4' SAM . . . N 3 89.303 129.034 54.591 0.72 3 ? C4' SAM 401 D 1 HETATM 12 O O4' SAM . . . N 3 90.128 129.078 55.774 0.72 3 ? O4' SAM 401 D 1 HETATM 13 C C3' SAM . . . N 3 90.012 129.927 53.567 0.72 3 ? C3' SAM 401 D 1 HETATM 14 O O3' SAM . . . N 3 89.073 130.878 53.08 0.72 3 ? O3' SAM 401 D 1 HETATM 15 C C2' SAM . . . N 3 91.164 130.575 54.367 0.72 3 ? C2' SAM 401 D 1 HETATM 16 O O2' SAM . . . N 3 91.382 131.962 54.12 0.72 3 ? O2' SAM 401 D 1 HETATM 17 C C1' SAM . . . N 3 90.68 130.372 55.788 0.72 3 ? C1' SAM 401 D 1 HETATM 18 N N9 SAM . . . N 3 91.678 130.455 56.849 0.72 3 ? N9 SAM 401 D 1 HETATM 19 C C8 SAM . . . N 3 92.985 130.038 56.829 0.72 3 ? C8 SAM 401 D 1 HETATM 20 N N7 SAM . . . N 3 93.597 130.145 57.985 0.72 3 ? N7 SAM 401 D 1 HETATM 21 C C5 SAM . . . N 3 92.625 130.673 58.824 0.72 3 ? C5 SAM 401 D 1 HETATM 22 C C6 SAM . . . N 3 92.621 130.978 60.2 0.72 3 ? C6 SAM 401 D 1 HETATM 23 N N6 SAM . . . N 3 93.68 130.81 60.999 0.72 3 ? N6 SAM 401 D 1 HETATM 24 N N1 SAM . . . N 3 91.469 131.447 60.739 0.72 3 ? N1 SAM 401 D 1 HETATM 25 C C2 SAM . . . N 3 90.401 131.597 59.945 0.72 3 ? C2 SAM 401 D 1 HETATM 26 N N3 SAM . . . N 3 90.288 131.344 58.637 0.72 3 ? N3 SAM 401 D 1 HETATM 27 C C4 SAM . . . N 3 91.44 130.877 58.134 0.72 3 ? C4 SAM 401 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #