data_4FQC # _model_server_result.job_id H9imjjX1WkKpyqbLZWr7Ig _model_server_result.datetime_utc '2024-11-27 01:16:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":311}' # _entry.id 4FQC # _exptl.entry_id 4FQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FQC _cell.length_a 67.787 _cell.length_b 67.787 _cell.length_c 94.115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 3 7 6 SIA GAL C2 O2 . O6 HO6 . sing 7 ? 3 8 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 3 9 8 NAG MAN C1 O1 . O2 HO2 . sing 9 ? 3 10 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG H 305 NAG 3 n C NAG 2 A 2 NAG H 306 NAG 3 n C BMA 3 A 3 BMA H 301 BMA 3 n C MAN 4 A 4 MAN H 302 MAN 3 n C NAG 5 A 5 NAG H 307 NAG 3 n C GAL 6 A 6 GAL H 308 GAL 3 n C SIA 7 A 7 SIA H 310 SIA 3 n C MAN 8 A 8 MAN H 303 MAN 3 n C NAG 9 A 9 NAG H 304 NAG 3 n C FUC 10 A 10 FUC H 309 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 159 H CYS 140 1_555 A SG CYS 215 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 15 L CYS 23 1_555 B SG CYS 83 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 133 L CYS 135 1_555 B SG CYS 192 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 124 H ASN 105 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale2 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 C O6 NAG . A NAG 1 1_555 C C1 FUC . A FUC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale4 C O4 NAG . A NAG 2 1_555 C C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale5 C O3 BMA . A BMA 3 1_555 C C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale6 C O6 BMA . A BMA 3 1_555 C C1 MAN . A MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 C O2 MAN . A MAN 4 1_555 C C1 NAG . A NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale8 C O4 NAG . A NAG 5 1_555 C C1 GAL . A GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale9 C O6 GAL . A GAL 6 1_555 C C2 SIA . A SIA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? covale ? covale10 C O2 MAN . A MAN 8 1_555 C C1 NAG . A NAG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 455 n n C C2 TAM sing 456 n n C C3 TAM sing 457 n n C N TAM sing 458 n n C1 C4 TAM sing 459 n n C1 H11 TAM sing 460 n n C1 H12 TAM sing 461 n n C2 C5 TAM sing 462 n n C2 H21 TAM sing 463 n n C2 H22 TAM sing 464 n n C3 C6 TAM sing 465 n n C3 H31 TAM sing 466 n n C3 H32 TAM sing 467 n n C4 O4 TAM sing 468 n n C4 H41 TAM sing 469 n n C4 H42 TAM sing 470 n n C5 O5 TAM sing 471 n n C5 H51 TAM sing 472 n n C5 H52 TAM sing 473 n n C6 O6 TAM sing 474 n n C6 H61 TAM sing 475 n n C6 H62 TAM sing 476 n n N HN1 TAM sing 477 n n N HN2 TAM sing 478 n n O4 HO4 TAM sing 479 n n O5 HO5 TAM sing 480 n n O6 HO6 TAM sing 481 n n # _atom_sites.entry_id 4FQC _atom_sites.fract_transf_matrix[1][1] 0.014752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TAM H 1 311 311 TAM TAM . E 5 HOH H 1 401 401 HOH HOH . E 5 HOH H 2 402 402 HOH HOH . E 5 HOH H 3 403 403 HOH HOH . E 5 HOH H 4 404 404 HOH HOH . E 5 HOH H 5 405 405 HOH HOH . E 5 HOH H 6 406 406 HOH HOH . E 5 HOH H 7 407 407 HOH HOH . E 5 HOH H 8 408 408 HOH HOH . E 5 HOH H 9 409 409 HOH HOH . E 5 HOH H 10 410 410 HOH HOH . E 5 HOH H 11 411 411 HOH HOH . E 5 HOH H 12 412 412 HOH HOH . E 5 HOH H 13 413 413 HOH HOH . E 5 HOH H 14 414 414 HOH HOH . E 5 HOH H 15 415 415 HOH HOH . E 5 HOH H 16 416 416 HOH HOH . E 5 HOH H 17 417 417 HOH HOH . E 5 HOH H 18 418 418 HOH HOH . E 5 HOH H 19 419 419 HOH HOH . E 5 HOH H 20 420 420 HOH HOH . E 5 HOH H 21 421 421 HOH HOH . E 5 HOH H 22 422 422 HOH HOH . E 5 HOH H 23 423 423 HOH HOH . E 5 HOH H 24 424 424 HOH HOH . E 5 HOH H 25 425 425 HOH HOH . E 5 HOH H 26 426 426 HOH HOH . E 5 HOH H 27 427 427 HOH HOH . E 5 HOH H 28 428 428 HOH HOH . E 5 HOH H 29 429 429 HOH HOH . E 5 HOH H 30 430 430 HOH HOH . E 5 HOH H 31 431 431 HOH HOH . E 5 HOH H 32 432 432 HOH HOH . E 5 HOH H 33 434 434 HOH HOH . E 5 HOH H 34 435 435 HOH HOH . E 5 HOH H 35 436 436 HOH HOH . E 5 HOH H 36 437 437 HOH HOH . E 5 HOH H 37 438 438 HOH HOH . E 5 HOH H 38 439 439 HOH HOH . E 5 HOH H 39 440 440 HOH HOH . E 5 HOH H 40 441 441 HOH HOH . E 5 HOH H 41 442 442 HOH HOH . E 5 HOH H 42 443 443 HOH HOH . E 5 HOH H 43 444 444 HOH HOH . E 5 HOH H 44 445 445 HOH HOH . E 5 HOH H 45 446 446 HOH HOH . E 5 HOH H 46 447 447 HOH HOH . E 5 HOH H 47 448 448 HOH HOH . E 5 HOH H 48 450 450 HOH HOH . E 5 HOH H 49 451 451 HOH HOH . E 5 HOH H 50 452 452 HOH HOH . E 5 HOH H 51 453 453 HOH HOH . E 5 HOH H 52 454 454 HOH HOH . E 5 HOH H 53 455 455 HOH HOH . E 5 HOH H 54 456 456 HOH HOH . E 5 HOH H 55 457 457 HOH HOH . E 5 HOH H 56 458 458 HOH HOH . E 5 HOH H 57 459 459 HOH HOH . E 5 HOH H 58 460 460 HOH HOH . E 5 HOH H 59 461 461 HOH HOH . E 5 HOH H 60 462 462 HOH HOH . E 5 HOH H 61 463 463 HOH HOH . E 5 HOH H 62 464 464 HOH HOH . E 5 HOH H 63 465 465 HOH HOH . E 5 HOH H 64 466 466 HOH HOH . E 5 HOH H 65 467 467 HOH HOH . E 5 HOH H 66 468 468 HOH HOH . E 5 HOH H 67 469 469 HOH HOH . E 5 HOH H 68 470 470 HOH HOH . E 5 HOH H 69 471 471 HOH HOH . E 5 HOH H 70 474 474 HOH HOH . E 5 HOH H 71 475 475 HOH HOH . E 5 HOH H 72 476 476 HOH HOH . E 5 HOH H 73 477 477 HOH HOH . E 5 HOH H 74 478 478 HOH HOH . E 5 HOH H 75 479 479 HOH HOH . E 5 HOH H 76 480 480 HOH HOH . E 5 HOH H 77 481 481 HOH HOH . F 5 HOH L 1 401 401 HOH HOH . F 5 HOH L 2 402 402 HOH HOH . F 5 HOH L 3 403 403 HOH HOH . F 5 HOH L 4 404 404 HOH HOH . F 5 HOH L 5 405 405 HOH HOH . F 5 HOH L 6 406 406 HOH HOH . F 5 HOH L 7 407 407 HOH HOH . F 5 HOH L 8 408 408 HOH HOH . F 5 HOH L 9 409 409 HOH HOH . F 5 HOH L 10 410 410 HOH HOH . F 5 HOH L 11 411 411 HOH HOH . F 5 HOH L 12 412 412 HOH HOH . F 5 HOH L 13 413 413 HOH HOH . F 5 HOH L 14 414 414 HOH HOH . F 5 HOH L 15 415 415 HOH HOH . F 5 HOH L 16 416 416 HOH HOH . F 5 HOH L 17 417 417 HOH HOH . F 5 HOH L 18 418 418 HOH HOH . F 5 HOH L 19 419 419 HOH HOH . F 5 HOH L 20 420 420 HOH HOH . F 5 HOH L 21 421 421 HOH HOH . F 5 HOH L 22 422 422 HOH HOH . F 5 HOH L 23 423 423 HOH HOH . F 5 HOH L 24 424 424 HOH HOH . F 5 HOH L 25 425 425 HOH HOH . F 5 HOH L 26 426 426 HOH HOH . F 5 HOH L 27 427 427 HOH HOH . F 5 HOH L 28 428 428 HOH HOH . F 5 HOH L 29 429 429 HOH HOH . F 5 HOH L 30 430 430 HOH HOH . F 5 HOH L 31 431 431 HOH HOH . F 5 HOH L 32 432 432 HOH HOH . F 5 HOH L 33 433 433 HOH HOH . F 5 HOH L 34 434 434 HOH HOH . F 5 HOH L 35 435 435 HOH HOH . F 5 HOH L 36 436 436 HOH HOH . F 5 HOH L 37 437 437 HOH HOH . F 5 HOH L 38 438 438 HOH HOH . F 5 HOH L 39 439 439 HOH HOH . F 5 HOH L 40 440 440 HOH HOH . F 5 HOH L 41 441 441 HOH HOH . F 5 HOH L 42 442 442 HOH HOH . F 5 HOH L 43 443 443 HOH HOH . F 5 HOH L 44 444 444 HOH HOH . F 5 HOH L 45 445 445 HOH HOH . F 5 HOH L 46 446 446 HOH HOH . F 5 HOH L 47 447 447 HOH HOH . F 5 HOH L 48 448 448 HOH HOH . F 5 HOH L 49 449 449 HOH HOH . F 5 HOH L 50 450 450 HOH HOH . F 5 HOH L 51 451 451 HOH HOH . F 5 HOH L 52 452 452 HOH HOH . F 5 HOH L 53 453 453 HOH HOH . F 5 HOH L 54 454 454 HOH HOH . F 5 HOH L 55 455 455 HOH HOH . F 5 HOH L 56 456 456 HOH HOH . F 5 HOH L 57 457 457 HOH HOH . F 5 HOH L 58 458 458 HOH HOH . F 5 HOH L 59 459 459 HOH HOH . F 5 HOH L 60 460 460 HOH HOH . F 5 HOH L 61 461 461 HOH HOH . F 5 HOH L 62 462 462 HOH HOH . F 5 HOH L 63 463 463 HOH HOH . F 5 HOH L 64 464 464 HOH HOH . F 5 HOH L 65 466 466 HOH HOH . F 5 HOH L 66 467 467 HOH HOH . F 5 HOH L 67 469 469 HOH HOH . F 5 HOH L 68 470 470 HOH HOH . F 5 HOH L 69 471 471 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . D 4 -4.158 -13.771 -19.421 1 51.45 ? C TAM 311 H 1 HETATM 2 C C1 TAM . . . D 4 -3.493 -13.813 -18.058 1 49.91 ? C1 TAM 311 H 1 HETATM 3 C C2 TAM . . . D 4 -3.09 -13.283 -20.364 1 51.36 ? C2 TAM 311 H 1 HETATM 4 C C3 TAM . . . D 4 -4.708 -15.129 -19.852 1 60.41 ? C3 TAM 311 H 1 HETATM 5 C C4 TAM . . . D 4 -4.512 -14.015 -16.954 1 56.49 ? C4 TAM 311 H 1 HETATM 6 C C5 TAM . . . D 4 -3.449 -13.581 -21.799 1 53.46 ? C5 TAM 311 H 1 HETATM 7 C C6 TAM . . . D 4 -3.637 -16.216 -19.878 1 73.88 ? C6 TAM 311 H 1 HETATM 8 N N TAM . . . D 4 -5.225 -12.763 -19.447 1 38.48 ? N TAM 311 H 1 HETATM 9 O O4 TAM . . . D 4 -4.299 -15.281 -16.319 1 55.32 ? O4 TAM 311 H 1 HETATM 10 O O5 TAM . . . D 4 -2.564 -12.718 -22.53 1 65.03 ? O5 TAM 311 H 1 HETATM 11 O O6 TAM . . . D 4 -3.463 -16.736 -18.552 1 86.29 ? O6 TAM 311 H 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #